Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

26173639 .. 26174433

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1133200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTCCTCCTGATTTAGTAAAGCCTTCATTACTTCACATTTCTCAGCTCCTTTTTGATTTCATCTGCAGGTTTAGCTTCTGCAGGGTAACTTCTAAAGCAAGAATGCAGCTTAATTCTCAACAAATACCGGCTGGGTGGACGATTTTGCTTGTTACCCCTGCTCTTCATTTAACTTCCGACACGTTCAAGGATCACTTGGAGTTCAATCCATGGCGTTGGAAGGACCTTGATTCCCTTGTTATATCTAAGAACTTCATGCCGTTTGGTGGCGGATTAAGGCAATGTGCTGGGGCTGAGTACACCAGAGCGTTCTTGTCCACCTTTCTTCATGTTTTGGTCACCAAATATAGGTGGACAACTGTAAAAGGCGCACGGATTTCTCGAAGTCCTATGTTGGCATTCGGGGATGGCGCTCACATTAAGTTCTCTGAGAAGAAAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

150

Amino Acids

16.99

Weight (kDa)

9.89

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 127	4.8e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	269, 351
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	190, 208
AluBI	AGCT	3 cut(s)	49, 78, 112
AluI	AGCT	3 cut(s)	49, 78, 112
AlwI	GGATC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	374, 416
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	247
BfmI	CTRYAG	2 cut(s)	67, 82
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 351
Bse118I	RCCGGY	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	269, 351
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	3 cut(s)	59, 288, 423
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	2 cut(s)	134, 290
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	269, 351
BsmI	GAATGC	2 cut(s)	111, 401
Bsp143I	GATC	1 cut(s)	193
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	273
BspCNI	CTCAG	3 cut(s)	58, 289, 424
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	71, 86
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	45, 249, 297, 432
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	374, 416
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	340
BstSFI	CTRYAG	2 cut(s)	67, 82
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	60
CfoI	GCGC	2 cut(s)	374, 416
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	3 cut(s)	213, 259, 332
CviJI	RGCY	7 cut(s)	5, 25, 49, 78, 112, 134, 296
CviKI_1	RGCY	7 cut(s)	5, 25, 49, 78, 112, 134, 296
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	4 cut(s)	45, 249, 297, 432
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	3 cut(s)	216, 262, 335
FaiI	YATR	6 cut(s)	214, 245, 260, 333, 351, 395
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	3 cut(s)	212, 258, 331
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	110
GlaI	GCGC	2 cut(s)	373, 415
GluI	GCNGC	1 cut(s)	110
GsaI	CCCAGC	2 cut(s)	138, 294
HaeII	RGCGCY	1 cut(s)	417
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	2 cut(s)	374, 416
Hin1II	CATG	3 cut(s)	216, 262, 335
Hin6I	GCGC	2 cut(s)	372, 414
HinP1I	GCGC	2 cut(s)	372, 414
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	4 cut(s)	141, 303, 321, 357
Hpy188I	TCNGA	2 cut(s)	181, 433
Hpy188III	TCNNGA	2 cut(s)	11, 384
Hpy8I	GTNNAC	4 cut(s)	141, 303, 321, 357
HpyAV	CCTTC	2 cut(s)	36, 217
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	69, 84, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	4 cut(s)	45, 249, 297, 432
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	216, 262, 335
HspAI	GCGC	2 cut(s)	372, 414
Kzo9I	GATC	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	10, 54
LpnPI	CCDG	8 cut(s)	24, 55, 70, 120, 144, 174, 276, 319
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	3 cut(s)	88, 154, 340
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	3 cut(s)	158, 320, 448
MluCI	AATT	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	200, 204
MnlI	CCTC	1 cut(s)	18
MseI	TTAA	4 cut(s)	114, 173, 278, 423
MspI	CCGG	1 cut(s)	131
Mva1269I	GAATGC	2 cut(s)	111, 401
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	216, 262, 335
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PctI	GAATGC	2 cut(s)	111, 401
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	340
PspFI	CCCAGC	2 cut(s)	134, 290
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PstI	CTGCAG	2 cut(s)	71, 86
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	114, 173, 278, 423
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	226
SetI	ASST	8 cut(s)	51, 74, 80, 114, 188, 231, 326, 356
SfcI	CTRYAG	2 cut(s)	67, 82
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	4 cut(s)	114, 173, 278, 423
Tru9I	TTAA	4 cut(s)	114, 173, 278, 423
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	18, 52, 158, 247, 320
TspGWI	ACGGA	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.