Rh6AG243600

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
43238120 .. 43242613
4494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG243600.1

Sequence Viewer

Length: 1329 bp
ATGGGTTTGCCTCTCATCGGTGAGACCCTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATTAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCGGGTAGGCCAGTTGTGATATCAGCTGATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTGAGATGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCATGAAGGTGAATCAAAGACAAATGCAGTTGGCATCGTTCACAAGTACGTAAGGAGCATTTTCTTGAATCACTTTGGTGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAAAGTCTATGCTCTTGGTCGAGTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTTAATTTTAGTGCAAAGCAGATGATTAGTTATGATGCTGAAAAATCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAACGACCATGTTGAGAGATATGCTCAAGGAGAGACACGATTCACCTGAGACCCAACATGGAGATTTCCTTGATCAAATTGCAAATGACATGGATAAGGAGAAGTTTTTATCACAGGATTTTAGTGTTCAGTTGGTGTTCGGGGGCTTATTCGCTACCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATCCTTCAGTCTTACAAGAGTTGACTGCTGAGCATGAAGCTATTCTAAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACCCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATTTACAATCCCAGAAGGTTGGACGATTATGGTTGTCACGTCTGCGCTTCAGTTAAATCCCAGCACATTCGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGTGGACAACAATCAAAGGAGCACGGATTGCTCGAAATCCCATTTTAGGGGGGTCTATGAGTCCAGACCACATTACATAGAAGAGAATCAAAAGCATAGGCAGCAAGCTTGTGAGCAACAGCATTGCAAGTTCGCTTGGCATGCTGAATTCGAACCTGTGGTAAACTTAATAGCTGGTGCAGAATGTCATCCACAAGAGCACCCAGCTCATCCAATTCATGATCCTTATTAA

Protein Analysis

442

Amino Acids

50.65

Weight (kDa)

5.96

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 10 - 371 2.1e-43 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AclWI GGATC 5 cut(s) 143, 851, 1061, 1074, 1313
AcsI RAATTY 3 cut(s) 155, 353, 1244
AcuI CTGAAG 4 cut(s) 763, 786, 893, 1025
AfaI GTAC 3 cut(s) 206, 281, 568
AfiI CCNNNNNNNGG 7 cut(s) 17, 583, 934, 988, 989, 1143, 1144
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 8 cut(s) 89, 160, 222, 301, 401, 538, 749, 1081
AhlI ACTAGT 1 cut(s) 113
AjiI CACGTC 1 cut(s) 1032
AjnI CCWGG 1 cut(s) 544
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 7 cut(s) 48, 146, 836, 968, 1205, 1271, 1304
AluI AGCT 7 cut(s) 48, 146, 836, 968, 1205, 1271, 1304
Alw21I GWGCWC 2 cut(s) 1121, 1299
Alw26I GTCTC 4 cut(s) 17, 613, 629, 969
AlwI GGATC 5 cut(s) 143, 851, 1061, 1074, 1313
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 1198
ApoI RAATTY 3 cut(s) 155, 353, 1244
ArsI GACNNNNNNTTYG 4 cut(s) 16, 48, 90, 122
Asp700I GAANNNNTTC 2 cut(s) 837, 927
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 951
AsuHPI GGTGA 4 cut(s) 32, 56, 254, 621
AsuII TTCGAA 1 cut(s) 1248
AvaII GGWCC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 1066
Bbv12I GWGCWC 2 cut(s) 1121, 1299
BbvI GCAGC 1 cut(s) 1210
BccI CCATC 1 cut(s) 509
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 1 cut(s) 205
BclI TGATCA 2 cut(s) 36, 658
BcnI CCSGG 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 17, 613, 629, 969
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 2 cut(s) 56, 114
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 205
BglII AGATCT 2 cut(s) 58, 225
BisI GCNGC 1 cut(s) 1199
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 1 cut(s) 1200
Bme1390I CCNGG 2 cut(s) 546, 951
Bme18I GGWCC 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 1068
BmrFI CCNGG 2 cut(s) 546, 951
BmrI ACTGGG 1 cut(s) 977
BmsI GCATC 3 cut(s) 276, 454, 805
BmuI ACTGGG 1 cut(s) 977
BplI GAGNNNNNCTC 2 cut(s) 594, 626
Bpu1102I GCTNAGC 1 cut(s) 825
Bpu14I TTCGAA 1 cut(s) 1248
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 951
Bsa29I ATCGAT 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 283
BsaI GGTCTC 2 cut(s) 17, 629
BsaJI CCNNGG 3 cut(s) 544, 545, 1085
Bsc4I CCNNNNNNNGG 7 cut(s) 17, 583, 934, 988, 989, 1143, 1144
Bse1I ACTGG 2 cut(s) 131, 983
Bse3DI GCAATG 1 cut(s) 1219
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 893
BseDI CCNNGG 3 cut(s) 544, 545, 1085
BseGI GGATG 5 cut(s) 796, 886, 978, 1285, 1306
BseLI CCNNNNNNNGG 7 cut(s) 17, 583, 934, 988, 989, 1143, 1144
BseMI GCAATG 1 cut(s) 1219
BseMII CTCAG 6 cut(s) 43, 306, 432, 479, 624, 816
BseNI ACTGG 2 cut(s) 131, 983
BseXI GCAGC 1 cut(s) 1210
BseYI CCCAGC 2 cut(s) 1052, 1300
BsgI GTGCAG 1 cut(s) 1296
BshFI GGCC 1 cut(s) 130
BshVI ATCGAT 1 cut(s) 893
BsiHKAI GWGCWC 2 cut(s) 1121, 1299
BsiSI CCGG 1 cut(s) 951
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 7 cut(s) 17, 583, 934, 988, 989, 1143, 1144
BsmAI GTCTC 4 cut(s) 17, 613, 629, 969
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 1 cut(s) 130
Bso31I GGTCTC 2 cut(s) 17, 629
Bsp119I TTCGAA 1 cut(s) 1248
Bsp1286I GDGCHC 2 cut(s) 1121, 1299
Bsp143I GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
Bsp1720I GCTNAGC 1 cut(s) 825
Bsp19I CCATGG 1 cut(s) 1085
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 6 cut(s) 42, 307, 431, 480, 625, 817
BspDI ATCGAT 1 cut(s) 893
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 1 cut(s) 1068
BspPI GGATC 5 cut(s) 143, 851, 1061, 1074, 1313
BspT104I TTCGAA 1 cut(s) 1248
BspTI CTTAAG 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 17, 629
BsrDI GCAATG 1 cut(s) 1219
BsrI ACTGG 2 cut(s) 131, 983
BssECI CCNNGG 3 cut(s) 544, 545, 1085
BssMI GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
BssT1I CCWWGG 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 546
Bst6I CTCTTC 2 cut(s) 912, 1173
BstAFI CTTAAG 1 cut(s) 323
BstAPI GCANNNNNTGC 1 cut(s) 1125
BstBAI YACGTR 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 1248
BstC8I GCNNGC 3 cut(s) 415, 1203, 1239
BstDEI CTNAG 6 cut(s) 29, 315, 418, 488, 633, 825
BstDSI CCRYGG 1 cut(s) 1085
BstF5I GGATG 5 cut(s) 796, 886, 978, 1285, 1306
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 8 cut(s) 39, 61, 151, 228, 661, 859, 1069, 1321
BstMAI GTCTC 4 cut(s) 17, 613, 629, 969
BstMBI GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
BstMWI GCNNNNNNNGC 4 cut(s) 767, 1125, 1198, 1238
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 2 cut(s) 413, 1241
BstSCI CCNGG 2 cut(s) 544, 949
BstSNI TACGTA 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 1210
BstX2I RGATCY 4 cut(s) 58, 225, 856, 1066
BstXI CCANNNNNNTGG 2 cut(s) 1011, 1092
BstYI RGATCY 4 cut(s) 58, 225, 856, 1066
Bsu15I ATCGAT 1 cut(s) 893
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 130
BsuTUI ATCGAT 1 cut(s) 893
BtgI CCRYGG 1 cut(s) 1085
BtrI CACGTC 1 cut(s) 1032
BtsCI GGATG 5 cut(s) 796, 886, 978, 1285, 1306
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 1 cut(s) 768
Cac8I GCNNGC 3 cut(s) 415, 1203, 1239
CciI TCATGA 1 cut(s) 1315
CfoI GCGC 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 893
Csp6I GTAC 3 cut(s) 205, 280, 567
CviQI GTAC 3 cut(s) 205, 280, 567
DdeI CTNAG 6 cut(s) 29, 315, 418, 488, 633, 825
DpnI GATC 8 cut(s) 38, 60, 150, 227, 660, 858, 1068, 1320
DpnII GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
Eam1104I CTCTTC 2 cut(s) 912, 1173
EarI CTCTTC 2 cut(s) 912, 1173
Eco105I TACGTA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 1085
Eco31I GGTCTC 2 cut(s) 17, 629
Eco32I GATATC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 4 cut(s) 763, 786, 893, 1025
EcoRI GAATTC 3 cut(s) 155, 353, 1244
EcoRII CCWGG 1 cut(s) 544
EcoRV GATATC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 1085
ErhI CCWWGG 1 cut(s) 1085
FaqI GGGAC 1 cut(s) 562
FauI CCCGC 1 cut(s) 115
FbaI TGATCA 2 cut(s) 36, 658
Fnu4HI GCNGC 1 cut(s) 1199
FokI GGATG 5 cut(s) 783, 893, 965, 1272, 1293
Fsp4HI GCNGC 1 cut(s) 1199
FspBI CTAG 2 cut(s) 56, 114
GlaI GCGC 1 cut(s) 1038
GluI GCNGC 1 cut(s) 1199
GsaI CCCAGC 2 cut(s) 1056, 1304
HaeIII GGCC 1 cut(s) 130
HapII CCGG 1 cut(s) 951
HhaI GCGC 1 cut(s) 1039
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 2 cut(s) 361, 819
HindII GTYRAC 2 cut(s) 361, 819
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 8 cut(s) 245, 301, 385, 392, 626, 749, 1157, 1183
HpaII CCGG 1 cut(s) 951
HphI GGTGA 4 cut(s) 32, 56, 254, 621
Hpy166II GTNNAC 6 cut(s) 274, 361, 785, 819, 1102, 1261
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 5 cut(s) 152, 298, 389, 1161, 1316
Hpy8I GTNNAC 6 cut(s) 274, 361, 785, 819, 1102, 1261
HpyAV CCTTC 8 cut(s) 176, 233, 577, 787, 810, 938, 1001, 1090
HpyCH4IV ACGT 2 cut(s) 282, 1031
HpyCH4V TGCA 9 cut(s) 235, 260, 443, 554, 668, 791, 947, 1224, 1277
HpyF10VI GCNNNNNNNGC 4 cut(s) 767, 1125, 1198, 1238
HpyF3I CTNAG 6 cut(s) 29, 315, 418, 488, 633, 825
HpySE526I ACGT 2 cut(s) 282, 1031
HspAI GCGC 1 cut(s) 1037
Ksp22I TGATCA 2 cut(s) 36, 658
Kzo9I GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
LmnI GCTCC 3 cut(s) 288, 342, 1116
Lsp1109I GCAGC 1 cut(s) 1210
LweI GCATC 3 cut(s) 276, 454, 805
MaeI CTAG 2 cut(s) 56, 114
MaeII ACGT 2 cut(s) 282, 1031
MaeIII GTNAC 2 cut(s) 586, 1027
MalI GATC 8 cut(s) 38, 60, 150, 227, 660, 858, 1068, 1320
MboI GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
MboII GAAGA 5 cut(s) 53, 220, 866, 899, 1190
MflI RGATCY 4 cut(s) 58, 225, 856, 1066
MhlI GDGCHC 2 cut(s) 1121, 1299
MluCI AATT 7 cut(s) 155, 353, 433, 562, 663, 1244, 1311
MlyI GAGTC 2 cut(s) 394, 1166
MmeI TCCRAC 2 cut(s) 992, 1073
MnlI CCTC 5 cut(s) 21, 38, 180, 312, 1057
MroXI GAANNNNTTC 2 cut(s) 837, 927
MseI TTAA 7 cut(s) 75, 324, 432, 1046, 1074, 1265, 1327
MslI CAYNNNNRTG 3 cut(s) 240, 309, 874
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 323
MspI CCGG 1 cut(s) 951
MspR9I CCNGG 2 cut(s) 546, 951
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 767, 1125, 1198, 1238
NciI CCSGG 1 cut(s) 951
NcoI CCATGG 1 cut(s) 1085
NdeII GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
NlaIV GGNNCC 1 cut(s) 1068
NmuCI GTSAC 1 cut(s) 1027
NspI RCATGY 2 cut(s) 413, 1241
NspV TTCGAA 1 cut(s) 1248
OliI CACNNNNGTG 1 cut(s) 309
PaeI GCATGC 1 cut(s) 1241
PagI TCATGA 1 cut(s) 1315
PasI CCCWGGG 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 1127
PdmI GAANNNNTTC 2 cut(s) 837, 927
PfeI GAWTC 6 cut(s) 245, 301, 392, 626, 749, 1183
PkrI GCNGC 1 cut(s) 1200
PleI GAGTC 2 cut(s) 393, 1165
PpsI GAGTC 2 cut(s) 393, 1165
Ppu21I YACGTR 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 544
PspFI CCCAGC 2 cut(s) 1052, 1300
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 1 cut(s) 1068
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 4 cut(s) 58, 225, 856, 1066
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 3 cut(s) 206, 281, 568
RsaNI GTAC 3 cut(s) 205, 280, 567
RseI CAYNNNNRTG 3 cut(s) 240, 309, 874
SaqAI TTAA 7 cut(s) 75, 324, 432, 1046, 1074, 1265, 1327
SatI GCNGC 1 cut(s) 1199
Sau3AI GATC 8 cut(s) 36, 58, 148, 225, 658, 856, 1066, 1318
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 2 cut(s) 394, 1166
ScrFI CCNGG 2 cut(s) 546, 951
SduI GDGCHC 2 cut(s) 1121, 1299
SfaNI GCATC 3 cut(s) 276, 454, 805
SfuI TTCGAA 1 cut(s) 1248
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 3 cut(s) 240, 309, 874
SmlI CTYRAG 2 cut(s) 323, 611
SmoI CTYRAG 2 cut(s) 323, 611
SnaBI TACGTA 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 113
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 7 cut(s) 155, 353, 433, 562, 663, 1244, 1311
SsiI CCGC 1 cut(s) 122
SspMI CTAG 2 cut(s) 56, 114
StyD4I CCNGG 2 cut(s) 544, 949
StyI CCWWGG 1 cut(s) 1085
TaiI ACGT 2 cut(s) 285, 1034
TaqI TCGA 5 cut(s) 383, 893, 1062, 1130, 1248
TasI AATT 7 cut(s) 155, 353, 433, 562, 663, 1244, 1311
TfiI GAWTC 6 cut(s) 245, 301, 392, 626, 749, 1183
Tru1I TTAA 7 cut(s) 75, 324, 432, 1046, 1074, 1265, 1327
Tru9I TTAA 7 cut(s) 75, 324, 432, 1046, 1074, 1265, 1327
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 1 cut(s) 1027
TseI GCWGC 1 cut(s) 1198
Tsp45I GTSAC 1 cut(s) 1027
TspDTI ATGAA 5 cut(s) 61, 252, 846, 897, 1304
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 1 cut(s) 768
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 3 cut(s) 155, 353, 1244
XceI RCATGY 2 cut(s) 413, 1241
XmnI GAANNNNTTC 2 cut(s) 837, 927
XspI CTAG 2 cut(s) 56, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.