Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

35959680 .. 35963885

Gene Structure 4206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACACTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCAGGTAGGCCAGTTGTGATATCAGCTGATCTTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTAAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCTGGAAGGTGAATCAAAGATAAACGCAGTGGGCATCGTTCACAAATACGTAAGGAGAGCTTTCTTGAATCACTTTGGCGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAATGTTTATGTTCTTGGTCAATTCAGGAATCTGTTGAAGTGAAACATGTTGGCTCAGTTATGGTTCTAAATTTTAGTGCAAAGCAGATGATTAGTTATAATGCTGAAAAAGCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAGAGACCATGTTGAGGGATATGCTCAAGGAGAGACACGATTCACCTGAGACCCAACATGGGGATTTCCTTGATCAAATTGCAAATGACATGGACAAGGAGAAGTTTTTATCAGAGGATTTTATCGTTCACTTGTTATTTGGGGGCTTATTTGCTGCCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGTATCCTTCAGTCTTACAAGAGTTTACTGCTGAGCATGAAGCTATTCTCAAAAATAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAGCTCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATTTACAATCCCAGAAGGTTGGACGATTATGGTTGTCACGTCTGCGCTTCAGTTAAATCCCAACACATTTGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGACATTGACTCACACTCTATATCCAAGAATTTCATGCCTTTTGGTGGAGGAATGAGACAATATTGGTGGAGGAATGAGACAATGTGCTGGGGCAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

415

Amino Acids

47.63

Weight (kDa)

6.81

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	13 - 402	3.9e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	161
AclWI	GGATC	3 cut(s)	899, 1109, 1122
AcsI	RAATTY	4 cut(s)	203, 401, 481, 1174
AcuI	CTGAAG	4 cut(s)	811, 834, 941, 1073
AfaI	GTAC	2 cut(s)	254, 616
AfiI	CCNNNNNNNGG	8 cut(s)	65, 631, 648, 693, 694, 1036, 1037, 1190
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	457
AhlI	ACTAGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	1080
AjnI	CCWGG	2 cut(s)	40, 592
AluBI	AGCT	7 cut(s)	96, 194, 341, 524, 884, 974, 1016
AluI	AGCT	7 cut(s)	96, 194, 341, 524, 884, 974, 1016
Alw26I	GTCTC	7 cut(s)	65, 632, 661, 677, 1017, 1195, 1217
AlwI	GGATC	3 cut(s)	899, 1109, 1122
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	4 cut(s)	203, 401, 481, 1174
ArsI	GACNNNNNNTTYG	4 cut(s)	64, 96, 138, 170
Asp700I	GAANNNNTTC	2 cut(s)	885, 975
AspLEI	GCGC	2 cut(s)	362, 1087
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	999
AsuHPI	GGTGA	4 cut(s)	80, 104, 302, 669
AvaII	GGWCC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	1114
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	2 cut(s)	42, 594
BciVI	GTATCC	2 cut(s)	253, 855
BclI	TGATCA	2 cut(s)	84, 706
BcnI	CCSGG	1 cut(s)	999
BcoDI	GTCTC	7 cut(s)	65, 632, 661, 677, 1017, 1195, 1217
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	2 cut(s)	104, 162
BfoI	RGCGCY	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	161
BfuI	GTATCC	2 cut(s)	253, 855
BglII	AGATCT	2 cut(s)	106, 273
BisI	GCNGC	1 cut(s)	789
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	3 cut(s)	42, 594, 999
Bme18I	GGWCC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	1080
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	14, 1116
BmrFI	CCNGG	3 cut(s)	42, 594, 999
BmrI	ACTGGG	1 cut(s)	1025
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	1025
BpmI	CTGGAG	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	999
Bsa29I	ATCGAT	1 cut(s)	941
BsaAI	YACGTR	1 cut(s)	331
BsaI	GGTCTC	2 cut(s)	632, 677
BsaJI	CCNNGG	3 cut(s)	592, 593, 1133
Bsc4I	CCNNNNNNNGG	8 cut(s)	65, 631, 648, 693, 694, 1036, 1037, 1190
Bse1I	ACTGG	2 cut(s)	179, 1031
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	42, 594
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	3 cut(s)	592, 593, 1133
BseGI	GGATG	2 cut(s)	934, 1026
BseLI	CCNNNNNNNGG	8 cut(s)	65, 631, 648, 693, 694, 1036, 1037, 1190
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	6 cut(s)	91, 354, 480, 527, 672, 864
BseNI	ACTGG	2 cut(s)	179, 1031
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	1 cut(s)	1233
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	941
BsiSI	CCGG	1 cut(s)	999
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	8 cut(s)	65, 631, 648, 693, 694, 1036, 1037, 1190
BsmAI	GTCTC	7 cut(s)	65, 632, 661, 677, 1017, 1195, 1217
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	2 cut(s)	632, 677
Bsp143I	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
Bsp1720I	GCTNAGC	1 cut(s)	873
Bsp19I	CCATGG	1 cut(s)	1133
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	6 cut(s)	90, 355, 479, 528, 673, 865
BspDI	ATCGAT	1 cut(s)	941
BspLI	GGNNCC	2 cut(s)	14, 1116
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	899, 1109, 1122
BspQI	GCTCTTC	1 cut(s)	981
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	2 cut(s)	632, 677
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	179, 1031
BssECI	CCNNGG	3 cut(s)	592, 593, 1133
BssMI	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
BssT1I	CCWWGG	1 cut(s)	1133
Bst2UI	CCWGG	2 cut(s)	42, 594
Bst6I	CTCTTC	2 cut(s)	960, 981
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	6 cut(s)	77, 363, 466, 536, 681, 873
BstDSI	CCRYGG	1 cut(s)	1133
BstF5I	GGATG	2 cut(s)	934, 1026
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	362, 1087
BstKTI	GATC	7 cut(s)	87, 109, 199, 276, 709, 907, 1117
BstMAI	GTCTC	7 cut(s)	65, 632, 661, 677, 1017, 1195, 1217
BstMBI	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 815
BstNI	CCWGG	2 cut(s)	42, 594
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	3 cut(s)	40, 592, 997
BstSNI	TACGTA	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	775
BstX2I	RGATCY	4 cut(s)	106, 273, 904, 1114
BstXI	CCANNNNNNTGG	2 cut(s)	1059, 1140
BstYI	RGATCY	4 cut(s)	106, 273, 904, 1114
Bsu15I	ATCGAT	1 cut(s)	941
BsuI	GTATCC	2 cut(s)	253, 855
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	941
BtgI	CCRYGG	1 cut(s)	1133
BtrI	CACGTC	1 cut(s)	1080
BtsCI	GGATG	2 cut(s)	934, 1026
BtsI	GCAGTG	2 cut(s)	315, 816
BtsIMutI	CAGTG	2 cut(s)	315, 816
BveI	ACCTGC	1 cut(s)	161
CfoI	GCGC	2 cut(s)	362, 1087
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	941
Csp6I	GTAC	2 cut(s)	253, 615
CspCI	CAANNNNNGTGG	2 cut(s)	1193, 1228
CviAII	CATG	8 cut(s)	458, 643, 692, 724, 878, 924, 1134, 1180
CviQI	GTAC	2 cut(s)	253, 615
DdeI	CTNAG	6 cut(s)	77, 363, 466, 536, 681, 873
DpnI	GATC	7 cut(s)	86, 108, 198, 275, 708, 906, 1116
DpnII	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
Eam1104I	CTCTTC	2 cut(s)	960, 981
EarI	CTCTTC	2 cut(s)	960, 981
Eco105I	TACGTA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	1133
Eco31I	GGTCTC	2 cut(s)	632, 677
Eco32I	GATATC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	4 cut(s)	811, 834, 941, 1073
EcoRI	GAATTC	2 cut(s)	203, 401
EcoRII	CCWGG	2 cut(s)	40, 592
EcoRV	GATATC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	1133
ErhI	CCWWGG	1 cut(s)	1133
FaeI	CATG	8 cut(s)	461, 646, 695, 727, 881, 927, 1137, 1183
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	8 cut(s)	457, 642, 691, 723, 877, 923, 1133, 1179
FbaI	TGATCA	2 cut(s)	84, 706
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	2 cut(s)	941, 1013
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	2 cut(s)	104, 162
GlaI	GCGC	2 cut(s)	361, 1086
GluI	GCNGC	1 cut(s)	789
GsaI	CCCAGC	1 cut(s)	1237
GsuI	CTGGAG	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	999
HhaI	GCGC	2 cut(s)	362, 1087
Hin1II	CATG	8 cut(s)	461, 646, 695, 727, 881, 927, 1137, 1183
Hin6I	GCGC	2 cut(s)	360, 1085
HinP1I	GCGC	2 cut(s)	360, 1085
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	6 cut(s)	293, 349, 440, 674, 797, 1154
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	4 cut(s)	80, 104, 302, 669
Hpy166II	GTNNAC	5 cut(s)	322, 409, 763, 833, 867
Hpy188I	TCNGA	2 cut(s)	159, 748
Hpy188III	TCNNGA	3 cut(s)	200, 346, 437
Hpy8I	GTNNAC	5 cut(s)	322, 409, 763, 833, 867
HpyAV	CCTTC	7 cut(s)	224, 281, 625, 835, 858, 1049, 1138
HpyCH4IV	ACGT	2 cut(s)	330, 1079
HpyCH4V	TGCA	6 cut(s)	24, 491, 602, 716, 839, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 815
HpyF3I	CTNAG	6 cut(s)	77, 363, 466, 536, 681, 873
HpySE526I	ACGT	2 cut(s)	330, 1079
Hsp92II	CATG	8 cut(s)	461, 646, 695, 727, 881, 927, 1137, 1183
HspAI	GCGC	2 cut(s)	360, 1085
Ksp22I	TGATCA	2 cut(s)	84, 706
Kzo9I	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
LguI	GCTCTTC	1 cut(s)	981
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	104, 162
MaeII	ACGT	2 cut(s)	330, 1079
MaeIII	GTNAC	1 cut(s)	1075
MalI	GATC	7 cut(s)	86, 108, 198, 275, 708, 906, 1116
MboI	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
MboII	GAAGA	6 cut(s)	26, 101, 268, 914, 947, 968
MflI	RGATCY	4 cut(s)	106, 273, 904, 1114
MluCI	AATT	7 cut(s)	203, 401, 432, 481, 610, 711, 1174
MlyI	GAGTC	1 cut(s)	1148
MmeI	TCCRAC	2 cut(s)	1040, 1121
MroXI	GAANNNNTTC	2 cut(s)	885, 975
MseI	TTAA	4 cut(s)	243, 372, 1094, 1122
MslI	CAYNNNNRTG	1 cut(s)	922
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	3 cut(s)	42, 594, 999
MvaI	CCWGG	2 cut(s)	42, 594
MwoI	GCNNNNNNNGC	2 cut(s)	521, 815
NciI	CCSGG	1 cut(s)	999
NcoI	CCATGG	1 cut(s)	1133
NdeII	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
NlaIII	CATG	8 cut(s)	461, 646, 695, 727, 881, 927, 1137, 1183
NlaIV	GGNNCC	2 cut(s)	14, 1116
NmuCI	GTSAC	1 cut(s)	1075
NspI	RCATGY	1 cut(s)	461
PasI	CCCWGGG	1 cut(s)	593
PciI	ACATGT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	981
PdmI	GAANNNNTTC	2 cut(s)	885, 975
PfeI	GAWTC	5 cut(s)	293, 349, 440, 674, 797
PkrI	GCNGC	1 cut(s)	790
PleI	GAGTC	1 cut(s)	1148
PpsI	GAGTC	1 cut(s)	1148
Ppu21I	YACGTR	1 cut(s)	331
PscI	ACATGT	1 cut(s)	457
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	40, 592
PspFI	CCCAGC	1 cut(s)	1233
PspGI	CCWGG	2 cut(s)	40, 592
PspN4I	GGNNCC	2 cut(s)	14, 1116
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	4 cut(s)	106, 273, 904, 1114
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	254, 616
RsaNI	GTAC	2 cut(s)	253, 615
RseI	CAYNNNNRTG	1 cut(s)	922
SapI	GCTCTTC	1 cut(s)	981
SaqAI	TTAA	4 cut(s)	243, 372, 1094, 1122
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	7 cut(s)	84, 106, 196, 273, 706, 904, 1114
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	3 cut(s)	42, 594, 999
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	922
SmlI	CTYRAG	2 cut(s)	371, 659
SmoI	CTYRAG	2 cut(s)	371, 659
SnaBI	TACGTA	1 cut(s)	331
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	7 cut(s)	203, 401, 432, 481, 610, 711, 1174
SspI	AATATT	1 cut(s)	1208
SspMI	CTAG	2 cut(s)	104, 162
StyD4I	CCNGG	3 cut(s)	40, 592, 997
StyI	CCWWGG	1 cut(s)	1133
TaiI	ACGT	2 cut(s)	333, 1082
TaqI	TCGA	1 cut(s)	941
TasI	AATT	7 cut(s)	203, 401, 432, 481, 610, 711, 1174
TfiI	GAWTC	5 cut(s)	293, 349, 440, 674, 797
Tru1I	TTAA	4 cut(s)	243, 372, 1094, 1122
Tru9I	TTAA	4 cut(s)	243, 372, 1094, 1122
TscAI	CASTG	2 cut(s)	315, 816
TseFI	GTSAC	1 cut(s)	1075
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	1075
TspDTI	ATGAA	5 cut(s)	17, 109, 894, 945, 1168
TspRI	CASTG	2 cut(s)	315, 816
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	4 cut(s)	203, 401, 481, 1174
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	2 cut(s)	885, 975
XspI	CTAG	2 cut(s)	104, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.