Rw3G026060

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
35338875 .. 35347321
8447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026060.1

Sequence Viewer

Length: 1389 bp
ATGTGGACTGAGGTGGGATTGTGTTTAGTAGCATTTCCGGTGATATACATCACCCACTGGATTATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACACTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCAGGTAGGCCAGTTGTGATATCAGCTAATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTATCTTCGTGCTGGAAGGTGAATCAAAGATAAACGCAGTTGGCATCGTTCACAAATACGTAAGGAGCGCTTTCTTGAATCACTTTGGCGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAATGTTTATGTTCTTGGTCAATTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGCTATGGTTCTAAATTTTAGTGCAAAGCAGATGATTAGTTATAATGCTGAAAAAGCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAGAGACAATGTTGAGGGATATGCTCAAGGAGAGACACGATTCGCCTGAGACCCAACATGGGGATTTCCTTGATCAAATTGCAAATGACATGGACAAGGAGAAGTTTTTATCAGAGGATTTTATCGTTCATTTGTTATTTGGGGGCTTATTTGCTTCCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATCCTTTAGTCTTACAAAAGTTTACTGCTGAGCATGAAGCTATTCTCAAAAATAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTTTTATCAACGAAACGCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGACCTTGGTTGGACGATTATAGTTGTCACGTCTGCGCTTCAGTTAAATCCCAACACATTTAAGGATCCCATTAAGTTCAATCCATGGCGTGGGAAGGACATTGACTCACACTCTATATCCAAGAATTTCATGCCTTTTGGTGGAGGAATGAGACAATGTGCTAGGGCAGAGTATAGTAGAGTTTTCTTGTCTACATTTTTCCATGTCTTGGTCACCAAATATAGGTGGACAATAATCAAAGGAGCACGGATTGCTCGAAATCCCATTTTAGAGTTTGGTGATGGCATTCACATTAAGTTCTCAGAAAAGAAAAAGTGA

Protein Analysis

462

Amino Acids

52.67

Weight (kDa)

8.9

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 440 3.1e-39 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 224
AccB7I CCANNNNNTGG 2 cut(s) 1160, 1279
AccI GTMKAC 1 cut(s) 1262
AclWI GGATC 3 cut(s) 929, 1130, 1143
AcsI RAATTY 4 cut(s) 266, 431, 511, 1195
AcuI CTGAAG 3 cut(s) 841, 971, 1094
AfaI GTAC 1 cut(s) 646
AfeI AGCGCT 1 cut(s) 370
AfiI CCNNNNNNNGG 9 cut(s) 128, 661, 723, 724, 1069, 1160, 1211, 1279, 1293
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 8 cut(s) 111, 200, 271, 379, 479, 616, 827, 1150
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 1101
AjnI CCWGG 2 cut(s) 103, 622
AluBI AGCT 6 cut(s) 159, 257, 500, 554, 914, 1049
AluI AGCT 6 cut(s) 159, 257, 500, 554, 914, 1049
Alw21I GWGCWC 1 cut(s) 1318
Alw26I GTCTC 6 cut(s) 128, 662, 691, 707, 1050, 1216
AlwI GGATC 3 cut(s) 929, 1130, 1143
Aor51HI AGCGCT 1 cut(s) 370
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 4 cut(s) 266, 431, 511, 1195
ArsI GACNNNNNNTTYG 4 cut(s) 127, 159, 201, 233
Asp700I GAANNNNTTC 2 cut(s) 915, 1008
AspLEI GCGC 3 cut(s) 371, 392, 1108
AspS9I GGNCC 2 cut(s) 209, 1072
AsuC2I CCSGG 1 cut(s) 1032
AsuHPI GGTGA 7 cut(s) 43, 52, 143, 167, 332, 1276, 1361
AvaII GGWCC 2 cut(s) 209, 1072
BamHI GGATCC 1 cut(s) 1135
Bbv12I GWGCWC 1 cut(s) 1318
BccI CCATC 2 cut(s) 587, 1346
BciT130I CCWGG 2 cut(s) 105, 624
BclI TGATCA 2 cut(s) 147, 736
BcnI CCSGG 1 cut(s) 1032
BcoDI GTCTC 6 cut(s) 128, 662, 691, 707, 1050, 1216
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 167, 225, 1233
BfoI RGCGCY 2 cut(s) 372, 393
BfrI CTTAAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 169
BlpI GCTNAGC 2 cut(s) 496, 903
Bme1390I CCNGG 3 cut(s) 105, 624, 1032
Bme18I GGWCC 2 cut(s) 209, 1072
BmgBI CACGTC 1 cut(s) 1101
BmgT120I GGNCC 2 cut(s) 209, 1072
BmiI GGNNCC 2 cut(s) 77, 1137
BmrFI CCNGG 3 cut(s) 105, 624, 1032
BmrI ACTGGG 1 cut(s) 1058
BmsI GCATC 2 cut(s) 354, 883
BmuI ACTGGG 1 cut(s) 1058
BpmI CTGGAG 1 cut(s) 87
Bpu1102I GCTNAGC 2 cut(s) 496, 903
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 1032
Bsa29I ATCGAT 1 cut(s) 971
BsaAI YACGTR 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 4 cut(s) 622, 623, 1075, 1154
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 9 cut(s) 128, 661, 723, 724, 1069, 1160, 1211, 1279, 1293
Bse1I ACTGG 3 cut(s) 62, 242, 1064
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 2 cut(s) 105, 624
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 4 cut(s) 622, 623, 1075, 1154
BseGI GGATG 3 cut(s) 874, 964, 1059
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 9 cut(s) 128, 661, 723, 724, 1069, 1160, 1211, 1279, 1293
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 7 cut(s) 154, 384, 510, 557, 702, 894, 1386
BseNI ACTGG 3 cut(s) 62, 242, 1064
BshFI GGCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 971
BsiHKAI GWGCWC 1 cut(s) 1318
BsiSI CCGG 2 cut(s) 38, 1032
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 9 cut(s) 128, 661, 723, 724, 1069, 1160, 1211, 1279, 1293
BsmAI GTCTC 6 cut(s) 128, 662, 691, 707, 1050, 1216
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 1356
BsnI GGCC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 1318
Bsp143I GATC 5 cut(s) 147, 169, 736, 934, 1135
Bsp1720I GCTNAGC 2 cut(s) 496, 903
Bsp19I CCATGG 1 cut(s) 1154
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 7 cut(s) 153, 385, 509, 558, 703, 895, 1385
BspDI ATCGAT 1 cut(s) 971
BspLI GGNNCC 2 cut(s) 77, 1137
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 3 cut(s) 929, 1130, 1143
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 707
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 3 cut(s) 62, 242, 1064
BssECI CCNNGG 4 cut(s) 622, 623, 1075, 1154
BssMI GATC 5 cut(s) 147, 169, 736, 934, 1135
BssT1I CCWWGG 2 cut(s) 1075, 1154
Bst2UI CCWGG 2 cut(s) 105, 624
Bst6I CTCTTC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 8 cut(s) 9, 140, 393, 496, 566, 711, 903, 1372
BstDSI CCRYGG 1 cut(s) 1154
BstEII GGTNACC 1 cut(s) 1282
BstF5I GGATG 3 cut(s) 874, 964, 1059
BstH2I RGCGCY 2 cut(s) 372, 393
BstHHI GCGC 3 cut(s) 371, 392, 1108
BstKTI GATC 5 cut(s) 150, 172, 739, 937, 1138
BstMAI GTCTC 6 cut(s) 128, 662, 691, 707, 1050, 1216
BstMBI GATC 5 cut(s) 147, 169, 736, 934, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 497, 551, 845, 1322
BstNI CCWGG 2 cut(s) 105, 624
BstNSI RCATGY 1 cut(s) 491
BstPI GGTNACC 1 cut(s) 1282
BstSCI CCNGG 3 cut(s) 103, 622, 1030
BstSNI TACGTA 1 cut(s) 361
BstX2I RGATCY 3 cut(s) 169, 934, 1135
BstYI RGATCY 3 cut(s) 169, 934, 1135
Bsu15I ATCGAT 1 cut(s) 971
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 1 cut(s) 1154
BtrI CACGTC 1 cut(s) 1101
BtsCI GGATG 3 cut(s) 874, 964, 1059
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 55, 846
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 493
CfoI GCGC 3 cut(s) 371, 392, 1108
Cfr13I GGNCC 2 cut(s) 209, 1072
ClaI ATCGAT 1 cut(s) 971
Csp6I GTAC 1 cut(s) 645
CviAII CATG 8 cut(s) 488, 722, 754, 908, 954, 1155, 1201, 1274
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 8 cut(s) 9, 140, 393, 496, 566, 711, 903, 1372
DpnI GATC 5 cut(s) 149, 171, 738, 936, 1137
DpnII GATC 5 cut(s) 147, 169, 736, 934, 1135
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Eco105I TACGTA 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 1075, 1154
Eco31I GGTCTC 1 cut(s) 707
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 209, 1072
Eco47III AGCGCT 1 cut(s) 370
Eco57I CTGAAG 3 cut(s) 841, 971, 1094
Eco91I GGTNACC 1 cut(s) 1282
EcoO109I RGGNCCY 1 cut(s) 1072
EcoO65I GGTNACC 1 cut(s) 1282
EcoRI GAATTC 2 cut(s) 266, 431
EcoRII CCWGG 2 cut(s) 103, 622
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 1075, 1154
ErhI CCWWGG 2 cut(s) 1075, 1154
FaeI CATG 8 cut(s) 491, 725, 757, 911, 957, 1158, 1204, 1277
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 1 cut(s) 640
FatI CATG 8 cut(s) 487, 721, 753, 907, 953, 1154, 1200, 1273
FbaI TGATCA 2 cut(s) 147, 736
FblI GTMKAC 1 cut(s) 1262
FokI GGATG 3 cut(s) 861, 971, 1046
FspBI CTAG 3 cut(s) 167, 225, 1233
GlaI GCGC 3 cut(s) 370, 391, 1107
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 2 cut(s) 372, 393
HaeIII GGCC 1 cut(s) 241
HapII CCGG 2 cut(s) 38, 1032
HhaI GCGC 3 cut(s) 371, 392, 1108
Hin1II CATG 8 cut(s) 491, 725, 757, 911, 957, 1158, 1204, 1277
Hin6I GCGC 3 cut(s) 369, 390, 1106
HinP1I GCGC 3 cut(s) 369, 390, 1106
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 6 cut(s) 323, 379, 470, 704, 827, 1175
HpaII CCGG 2 cut(s) 38, 1032
HphI GGTGA 7 cut(s) 43, 52, 143, 167, 332, 1276, 1361
Hpy166II GTNNAC 7 cut(s) 6, 352, 439, 863, 897, 1263, 1299
Hpy188I TCNGA 3 cut(s) 222, 778, 1375
Hpy188III TCNNGA 3 cut(s) 263, 376, 467
Hpy8I GTNNAC 7 cut(s) 6, 352, 439, 863, 897, 1263, 1299
HpyAV CCTTC 5 cut(s) 287, 311, 655, 865, 1159
HpyCH4IV ACGT 2 cut(s) 360, 1100
HpyCH4V TGCA 6 cut(s) 87, 521, 632, 746, 869, 1028
HpyF10VI GCNNNNNNNGC 4 cut(s) 497, 551, 845, 1322
HpyF3I CTNAG 8 cut(s) 9, 140, 393, 496, 566, 711, 903, 1372
HpySE526I ACGT 2 cut(s) 360, 1100
Hsp92II CATG 8 cut(s) 491, 725, 757, 911, 957, 1158, 1204, 1277
HspAI GCGC 3 cut(s) 369, 390, 1106
Ksp22I TGATCA 2 cut(s) 147, 736
Kzo9I GATC 5 cut(s) 147, 169, 736, 934, 1135
LmnI GCTCC 3 cut(s) 366, 420, 1313
LweI GCATC 2 cut(s) 354, 883
MaeI CTAG 3 cut(s) 167, 225, 1233
MaeII ACGT 2 cut(s) 360, 1100
MaeIII GTNAC 2 cut(s) 1096, 1282
MalI GATC 5 cut(s) 149, 171, 738, 936, 1137
MboI GATC 5 cut(s) 147, 169, 736, 934, 1135
MboII GAAGA 5 cut(s) 89, 164, 298, 944, 977
MflI RGATCY 3 cut(s) 169, 934, 1135
MhlI GDGCHC 1 cut(s) 1318
MluCI AATT 7 cut(s) 266, 431, 462, 511, 640, 741, 1195
MlyI GAGTC 1 cut(s) 1169
MmeI TCCRAC 1 cut(s) 1061
MnlI CCTC 9 cut(s) 4, 66, 111, 132, 291, 390, 672, 772, 1208
MroXI GAANNNNTTC 2 cut(s) 915, 1008
MseI TTAA 5 cut(s) 402, 1115, 1131, 1143, 1365
MslI CAYNNNNRTG 1 cut(s) 952
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 2 cut(s) 38, 1032
MspR9I CCNGG 3 cut(s) 105, 624, 1032
Mva1269I GAATGC 1 cut(s) 1356
MvaI CCWGG 2 cut(s) 105, 624
MwoI GCNNNNNNNGC 4 cut(s) 497, 551, 845, 1322
NciI CCSGG 1 cut(s) 1032
NcoI CCATGG 1 cut(s) 1154
NdeII GATC 5 cut(s) 147, 169, 736, 934, 1135
NlaIII CATG 8 cut(s) 491, 725, 757, 911, 957, 1158, 1204, 1277
NlaIV GGNNCC 2 cut(s) 77, 1137
NmuCI GTSAC 2 cut(s) 1096, 1282
NspI RCATGY 1 cut(s) 491
PasI CCCWGGG 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 1324
PctI GAATGC 1 cut(s) 1356
PdmI GAANNNNTTC 2 cut(s) 915, 1008
PfeI GAWTC 5 cut(s) 323, 379, 470, 704, 827
PflMI CCANNNNNTGG 2 cut(s) 1160, 1279
PleI GAGTC 1 cut(s) 1169
PpsI GAGTC 1 cut(s) 1169
Ppu21I YACGTR 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 1072
PsiI TTATAA 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 2 cut(s) 103, 622
PspEI GGTNACC 1 cut(s) 1282
PspGI CCWGG 2 cut(s) 103, 622
PspN4I GGNNCC 2 cut(s) 77, 1137
PspPI GGNCC 2 cut(s) 209, 1072
PspPPI RGGWCCY 1 cut(s) 1072
PsuI RGATCY 3 cut(s) 169, 934, 1135
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 952
SaqAI TTAA 5 cut(s) 402, 1115, 1131, 1143, 1365
Sau3AI GATC 5 cut(s) 147, 169, 736, 934, 1135
Sau96I GGNCC 2 cut(s) 209, 1072
SchI GAGTC 1 cut(s) 1169
ScrFI CCNGG 3 cut(s) 105, 624, 1032
SduI GDGCHC 1 cut(s) 1318
SfaNI GCATC 2 cut(s) 354, 883
SinI GGWCC 2 cut(s) 209, 1072
SmiMI CAYNNNNRTG 1 cut(s) 952
SmlI CTYRAG 2 cut(s) 401, 689
SmoI CTYRAG 2 cut(s) 401, 689
SnaBI TACGTA 1 cut(s) 361
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 7 cut(s) 266, 431, 462, 511, 640, 741, 1195
SspMI CTAG 3 cut(s) 167, 225, 1233
StyD4I CCNGG 3 cut(s) 103, 622, 1030
StyI CCWWGG 2 cut(s) 1075, 1154
TaiI ACGT 2 cut(s) 363, 1103
TaqI TCGA 2 cut(s) 971, 1327
TasI AATT 7 cut(s) 266, 431, 462, 511, 640, 741, 1195
TfiI GAWTC 5 cut(s) 323, 379, 470, 704, 827
Tru1I TTAA 5 cut(s) 402, 1115, 1131, 1143, 1365
Tru9I TTAA 5 cut(s) 402, 1115, 1131, 1143, 1365
TscAI CASTG 2 cut(s) 62, 846
TseFI GTSAC 2 cut(s) 1096, 1282
Tsp45I GTSAC 2 cut(s) 1096, 1282
TspDTI ATGAA 6 cut(s) 80, 172, 782, 924, 975, 1189
TspGWI ACGGA 1 cut(s) 1333
TspRI CASTG 2 cut(s) 62, 846
Van91I CCANNNNNTGG 2 cut(s) 1160, 1279
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 209, 1072
XapI RAATTY 4 cut(s) 266, 431, 511, 1195
XceI RCATGY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 1262
XmnI GAANNNNTTC 2 cut(s) 915, 1008
XspI CTAG 3 cut(s) 167, 225, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.