Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

43836236 .. 43839720

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTTTGGTTCAAAAGAGAACAAACAAATAACACAAATGATCTCCCCGAGGGTTACCTTTAATAAAAGATCAGAATATATCTTTTTATTTTTTATTTTTGTTACTTGTAATTTTACTCATATATATGGGCTCATATTTAGGACCAGTATAGCTGGTAGACCAGTTGTTATATCAGCCGATCCTGAAATCAACAATTACCTGATTCAGCAAGAAGGGAAGCTACTTGAGGTATGGTACTTGGACACATTTTCCGAGATTTTCAAGCAAGATGGTGATTCACGAACGAATGCAGCCAGAACGGTTCACAAGTACTTGAGACACATTTTCTTGGAGCACTTTGGTGCTGAGATCCTTAAGAAAAAGTTGCTCACCCAAATAGAAGCATTCGTCGACAAAACTTTATGTTCCTGGTCAAGTCAGAAATCTGTTGAAAGCATACGATTGGCCACAGTGCTGAAATCTCCTCTGGAAACTCGAGTCTTGAGTGAGAAGTATACTAGAGTCATAGAAGGTCTTATGTCCTTTCCCATAAACTTCCGCAGCACAGCATATTTTAAGTGTCTAATGGATACTTCAAACTCAATTTCTGTTGTATTCATTAAGGAGCACAAGAAGGTAATAACCATGTTGAAGGATATGCTAAACGAGAGACGCGTTTCCCCTGAGACATGCCGAGGAGATTTCCTTGATAATCTTATCGTTGACATGGAAAAGGAGGAGTTTATGACAGAGGATTTTGCAGTCCAATTGATATTTGGGGGCTCATTTACTAACTTTGAGTCTGTTCACCGAAAATGCTTTGCAGGCTTTACAATTCCAGCTGGGTGGACAGTTATGGTTGTCACCTCTGCTCTTCATATGAATCCCAACACATTCAAAGATCCCCTCGTGTTCAATCCATGGCATTGGAAGAACTTCATGCCTTTTGGTGGAGGAATGAGGCAATGTGCAGGATCAGAGTATAGTAGAGCTTTTTTAGCCACCTTTCTCCATGTCTTGGTCACCAAATACCTGTTCATTTTATCACTTCTCTCTGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

347

Amino Acids

40.11

Weight (kDa)

8.77

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	267 - 339	2.8e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	997
AccI	GTMKAC	3 cut(s)	157, 390, 494
AccII	CGCG	1 cut(s)	654
AciI	CCGC	1 cut(s)	538
AclWI	GGATC	4 cut(s)	173, 343, 875, 961
AcoI	YGGCCR	1 cut(s)	444
AfaI	GTAC	2 cut(s)	236, 311
AfiI	CCNNNNNNNGG	2 cut(s)	929, 997
AflII	CTTAAG	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	7 cut(s)	12, 262, 431, 576, 631, 877, 895
AjnI	CCWGG	1 cut(s)	407
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	152, 220, 821, 971
AluI	AGCT	4 cut(s)	152, 220, 821, 971
Alw21I	GWGCWC	2 cut(s)	336, 609
Alw26I	GTCTC	3 cut(s)	310, 643, 659
AlwI	GGATC	4 cut(s)	173, 343, 875, 961
Ama87I	CYCGRG	2 cut(s)	46, 474
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	290, 540
Asp700I	GAANNNNTTC	1 cut(s)	914
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	5 cut(s)	284, 361, 779, 835, 994
AvaI	CYCGRG	2 cut(s)	46, 474
AvaII	GGWCC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	132, 764
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BauI	CACGAG	1 cut(s)	887
Bbv12I	GWGCWC	2 cut(s)	336, 609
BbvI	GCAGC	2 cut(s)	302, 552
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	409
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	3 cut(s)	310, 643, 659
BfaI	CTAG	1 cut(s)	498
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	291, 541
BlsI	GCNGC	2 cut(s)	292, 542
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	141
BmeT110I	CYCGRG	2 cut(s)	46, 474
BmgT120I	GGNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	409
BpuEI	CTTGAG	3 cut(s)	245, 334, 502
BsaJI	CCNNGG	3 cut(s)	47, 673, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	929, 997
Bse1I	ACTGG	2 cut(s)	144, 161
Bse3DI	GCAATG	1 cut(s)	950
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	3 cut(s)	47, 673, 899
BseLI	CCNNNNNNNGG	2 cut(s)	929, 997
BseMI	GCAATG	1 cut(s)	950
BseMII	CTCAG	2 cut(s)	336, 654
BseNI	ACTGG	2 cut(s)	144, 161
BseRI	GAGGAG	3 cut(s)	453, 690, 731
BseXI	GCAGC	2 cut(s)	302, 552
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	336, 609
BsiHKCI	CYCGRG	2 cut(s)	46, 474
BslI	CCNNNNNNNGG	2 cut(s)	929, 997
BsmAI	GTCTC	3 cut(s)	310, 643, 659
BsmBI	CGTCTC	1 cut(s)	643
BsmI	GAATGC	2 cut(s)	292, 383
BsnI	GGCC	1 cut(s)	446
BsoBI	CYCGRG	2 cut(s)	46, 474
Bsp1286I	GDGCHC	4 cut(s)	132, 336, 609, 764
Bsp143I	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	2 cut(s)	337, 655
BspFNI	CGCG	1 cut(s)	654
BspPI	GGATC	4 cut(s)	173, 343, 875, 961
BspQI	GCTCTTC	1 cut(s)	858
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	950
BsrI	ACTGG	2 cut(s)	144, 161
BssECI	CCNNGG	3 cut(s)	47, 673, 899
BssMI	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
BssNAI	GTATAC	1 cut(s)	495
BssSI	CACGAG	1 cut(s)	887
BssT1I	CCWWGG	1 cut(s)	899
Bst1107I	GTATAC	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	887
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	3 cut(s)	301, 451, 832
Bst6I	CTCTTC	1 cut(s)	858
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	805
BstDEI	CTNAG	2 cut(s)	345, 663
BstDSI	CCRYGG	1 cut(s)	899
BstEII	GGTNACC	2 cut(s)	52, 1000
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	6 cut(s)	42, 71, 181, 351, 883, 956
BstMAI	GTCTC	3 cut(s)	310, 643, 659
BstMBI	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
BstMWI	GCNNNNNNNGC	2 cut(s)	804, 977
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	672
BstPI	GGTNACC	2 cut(s)	52, 1000
BstSCI	CCNGG	1 cut(s)	407
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	302, 552
BstX2I	RGATCY	2 cut(s)	348, 880
BstXI	CCANNNNNNTGG	2 cut(s)	825, 906
BstYI	RGATCY	2 cut(s)	348, 880
BstZ17I	GTATAC	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	899
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	235, 310
CviAII	CATG	6 cut(s)	625, 669, 706, 900, 919, 992
CviQI	GTAC	2 cut(s)	235, 310
DdeI	CTNAG	2 cut(s)	345, 663
DpnI	GATC	6 cut(s)	41, 70, 180, 350, 882, 955
DpnII	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	899
Eco24I	GRGCYC	2 cut(s)	132, 764
Eco47I	GGWCC	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	46, 474
Eco91I	GGTNACC	2 cut(s)	52, 1000
EcoO65I	GGTNACC	2 cut(s)	52, 1000
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	899
EcoT38I	GRGCYC	2 cut(s)	132, 764
ErhI	CCWWGG	1 cut(s)	899
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	6 cut(s)	628, 672, 709, 903, 922, 995
FatI	CATG	6 cut(s)	624, 668, 705, 899, 918, 991
FauNDI	CATATG	1 cut(s)	858
FblI	GTMKAC	3 cut(s)	157, 390, 494
Fnu4HI	GCNGC	2 cut(s)	291, 541
FriOI	GRGCYC	2 cut(s)	132, 764
Fsp4HI	GCNGC	2 cut(s)	291, 541
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	291, 541
GsaI	CCCAGC	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	446
HgaI	GACGC	1 cut(s)	660
Hin1II	CATG	6 cut(s)	628, 672, 709, 903, 922, 995
HincII	GTYRAC	2 cut(s)	391, 703
HindII	GTYRAC	2 cut(s)	391, 703
HinfI	GANTC	6 cut(s)	202, 275, 477, 501, 779, 862
HphI	GGTGA	5 cut(s)	284, 361, 779, 835, 994
Hpy166II	GTNNAC	7 cut(s)	158, 304, 391, 495, 703, 787, 828
Hpy188I	TCNGA	5 cut(s)	73, 253, 420, 958, 1036
Hpy188III	TCNNGA	4 cut(s)	182, 279, 467, 481
Hpy8I	GTNNAC	7 cut(s)	158, 304, 391, 495, 703, 787, 828
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	4 cut(s)	206, 503, 607, 625
HpyCH4III	ACNGT	3 cut(s)	301, 451, 832
HpyCH4V	TGCA	4 cut(s)	290, 740, 803, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	804, 977
HpyF3I	CTNAG	2 cut(s)	345, 663
Hsp92II	CATG	6 cut(s)	628, 672, 709, 903, 922, 995
Kzo9I	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	331, 604
Lsp1109I	GCAGC	2 cut(s)	302, 552
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	4 cut(s)	52, 100, 841, 1000
MalI	GATC	6 cut(s)	41, 70, 180, 350, 882, 955
MboI	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
MboII	GAAGA	2 cut(s)	845, 922
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	2 cut(s)	348, 880
MhlI	GDGCHC	4 cut(s)	132, 336, 609, 764
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	5 cut(s)	109, 193, 582, 746, 813
MluI	ACGCGT	1 cut(s)	652
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	3 cut(s)	486, 510, 788
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	4 cut(s)	60, 354, 555, 600
MslI	CAYNNNNRTG	2 cut(s)	123, 339
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	821
MspCI	CTTAAG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	409
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	2 cut(s)	292, 383
MvaI	CCWGG	1 cut(s)	409
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	804, 977
NcoI	CCATGG	1 cut(s)	899
NdeI	CATATG	1 cut(s)	858
NdeII	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
NlaIII	CATG	6 cut(s)	628, 672, 709, 903, 922, 995
NmeAIII	GCCGAG	1 cut(s)	698
NmuCI	GTSAC	2 cut(s)	841, 1000
NspI	RCATGY	1 cut(s)	672
OliI	CACNNNNGTG	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PctI	GAATGC	2 cut(s)	292, 383
PdmI	GAANNNNTTC	1 cut(s)	914
PfeI	GAWTC	3 cut(s)	202, 275, 862
PflMI	CCANNNNNTGG	1 cut(s)	997
PkrI	GCNGC	2 cut(s)	292, 542
PleI	GAGTC	3 cut(s)	485, 509, 787
PpsI	GAGTC	3 cut(s)	485, 509, 787
Psp6I	CCWGG	1 cut(s)	407
PspEI	GGTNACC	2 cut(s)	52, 1000
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	141
PspXI	VCTCGAGB	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	348, 880
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	236, 311
RsaNI	GTAC	2 cut(s)	235, 310
RseI	CAYNNNNRTG	2 cut(s)	123, 339
SalI	GTCGAC	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	4 cut(s)	60, 354, 555, 600
SatI	GCNGC	2 cut(s)	291, 541
Sau3AI	GATC	6 cut(s)	39, 68, 178, 348, 880, 953
Sau96I	GGNCC	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	3 cut(s)	486, 510, 788
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	4 cut(s)	132, 336, 609, 764
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	123, 339
SmlI	CTYRAG	5 cut(s)	224, 313, 353, 474, 481
SmoI	CTYRAG	5 cut(s)	224, 313, 353, 474, 481
Sse9I	AATT	5 cut(s)	109, 193, 582, 746, 813
SsiI	CCGC	1 cut(s)	538
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	3 cut(s)	301, 451, 832
TaqI	TCGA	2 cut(s)	390, 475
TasI	AATT	5 cut(s)	109, 193, 582, 746, 813
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	202, 275, 862
Tru1I	TTAA	4 cut(s)	60, 354, 555, 600
Tru9I	TTAA	4 cut(s)	60, 354, 555, 600
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	841, 1000
TseI	GCWGC	2 cut(s)	290, 540
Tsp45I	GTSAC	2 cut(s)	841, 1000
TspDTI	ATGAA	5 cut(s)	586, 845, 875, 907, 1006
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	997
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	141
XceI	RCATGY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	3 cut(s)	157, 390, 494
XmnI	GAANNNNTTC	1 cut(s)	914
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.