Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

36199658 .. 36215806

Gene Structure 16149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCAGACTATCTTCTCTTAACCCAGACTAGTTTGGCAGGTAGGCCAGTTGTGATATCAGCTGATCCTGAATTCAATAACCTCCTTTTTCAGCAAGAAGGGAGGTCTGTTAAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCTGGAAGGTGAATCAAAGATAAACGCAGTTGGCATCGTTCACAAATACATAAGGAGCGCTTGCTTGAATCACTTTGGCACTGAGAGGCTTAAGGAAAAGTTGCTCCTTGAAATACAAGAATTCGTCAACAAATGTTTATGTTCTTGGTCAATTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTCTAAATATCAATCCCAGCACTTATTCACATATTAGTAATGCTTATGATCTCCTGATGTTCATGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

6.06

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	74, 272
AfaI	GTAC	1 cut(s)	125
AfeI	AGCGCT	1 cut(s)	211
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	79, 141, 220, 263, 320
AhlI	ACTAGT	1 cut(s)	32
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AlwI	GGATC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	1 cut(s)	47
ApoI	RAATTY	2 cut(s)	74, 272
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	144
BmsI	GCATC	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	225, 351
BseNI	ACTGG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	67, 144, 388
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	2 cut(s)	226, 350
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	62
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	67, 144, 388
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	214, 334
BstDEI	CTNAG	2 cut(s)	234, 337
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	3 cut(s)	70, 147, 391
BstMBI	GATC	3 cut(s)	67, 144, 388
BstNSI	RCATGY	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	214, 334
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	329, 403
CviJI	RGCY	5 cut(s)	5, 49, 65, 241, 336
CviKI_1	RGCY	5 cut(s)	5, 49, 65, 241, 336
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	234, 337
DpnI	GATC	3 cut(s)	69, 146, 390
DpnII	GATC	3 cut(s)	67, 144, 388
Eco32I	GATATC	1 cut(s)	60
Eco47III	AGCGCT	1 cut(s)	211
EcoRI	GAATTC	2 cut(s)	74, 272
EcoRV	GATATC	1 cut(s)	60
FaeI	CATG	2 cut(s)	332, 406
FaiI	YATR	7 cut(s)	203, 292, 330, 372, 387, 404, 409
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FatI	CATG	2 cut(s)	328, 402
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	332, 406
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	164, 220, 311
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	193, 280
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	71, 308, 394
Hpy8I	GTNNAC	2 cut(s)	193, 280
HpyAV	CCTTC	2 cut(s)	95, 152
HpyF3I	CTNAG	2 cut(s)	234, 337
Hsp92II	CATG	2 cut(s)	332, 406
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	67, 144, 388
LmnI	GCTCC	2 cut(s)	207, 261
LpnPI	CCDG	9 cut(s)	27, 41, 63, 84, 140, 293, 318, 370, 407
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	33
MalI	GATC	3 cut(s)	69, 146, 390
MboI	GATC	3 cut(s)	67, 144, 388
MboII	GAAGA	2 cut(s)	8, 139
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	3 cut(s)	74, 272, 303
MnlI	CCTC	3 cut(s)	95, 99, 231
MseI	TTAA	3 cut(s)	23, 114, 243
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	242
NdeII	GATC	3 cut(s)	67, 144, 388
NlaIII	CATG	2 cut(s)	332, 406
NspI	RCATGY	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	164, 220, 311
PspFI	CCCAGC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	3 cut(s)	23, 114, 243
Sau3AI	GATC	3 cut(s)	67, 144, 388
SetI	ASST	5 cut(s)	46, 67, 87, 110, 163
SfaNI	GCATC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	3 cut(s)	74, 272, 303
SspMI	CTAG	1 cut(s)	33
TasI	AATT	3 cut(s)	74, 272, 303
TfiI	GAWTC	3 cut(s)	164, 220, 311
Tru1I	TTAA	3 cut(s)	23, 114, 243
Tru9I	TTAA	3 cut(s)	23, 114, 243
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	74, 272
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.