Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

41738966 .. 41740784

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCGTTCTGCAAACTCGTGGCAGCTACGTGACCGTAGAAATGTCTTAAAGAGGTTGTACTGGCCTACTGGTTTAGGAAAGGGGAGGCATGCTATGACTAGTGAAACCGGATCTCTCATTATTCCAGTATCATATGGGCTCATATTTCGGACAAGTATAGCCGGTAGACCAGTTGTTATATCAGCCGATCTTGAAATCAACAATTACCTGATTCAGCAAGAAGGGAAGCTACTTGAGGTATGGTTCTTGGACACATTTTCCGAGATTTTCAAGCAAGATGGTGATTCACGAACGAATGCAGCCAGAACGTACGGTTCACAAATGGGATTAAACTTTGGTGCAGAGCATATGATTGGCTACAGTGGTGAAATCTCATCTGGAGTTGACTGTAAGTATAGGTTGAGCATCAATTCAGTGTCAATAAATCCTCTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

145

Amino Acids

16.24

Weight (kDa)

9.16

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	118
AfaI	GTAC	2 cut(s)	59, 311
AgsI	TTSAA	2 cut(s)	194, 271
AhlI	ACTAGT	1 cut(s)	98
AluBI	AGCT	2 cut(s)	25, 229
AluI	AGCT	2 cut(s)	25, 229
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	22, 299
AsuHPI	GGTGA	2 cut(s)	293, 377
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	34, 311
BccI	CCATC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	2 cut(s)	99, 436
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	23, 300
BlsI	GCNGC	2 cut(s)	24, 301
BmsI	GCATC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	4 cut(s)	65, 73, 125, 170
BseNI	ACTGG	4 cut(s)	65, 73, 125, 170
BseXI	GCAGC	2 cut(s)	34, 311
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	108, 162
BsiWI	CGTACG	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	110, 187
BspANI	GGCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	4 cut(s)	65, 73, 125, 170
BssAI	RCCGGY	1 cut(s)	161
BssMI	GATC	2 cut(s)	110, 187
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst4CI	ACNGT	4 cut(s)	35, 314, 362, 389
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	113, 190
BstMBI	GATC	2 cut(s)	110, 187
BstNSI	RCATGY	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	34, 311
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	367, 420
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	58, 310
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	8 cut(s)	25, 64, 139, 161, 185, 229, 302, 357
CviKI_1	RGCY	8 cut(s)	25, 64, 139, 161, 185, 229, 302, 357
CviQI	GTAC	2 cut(s)	58, 310
DpnI	GATC	2 cut(s)	112, 189
DpnII	GATC	2 cut(s)	110, 187
Eco24I	GRGCYC	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	92
FatI	CATG	1 cut(s)	88
FauNDI	CATATG	2 cut(s)	133, 348
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	23, 300
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	23, 300
FspBI	CTAG	2 cut(s)	99, 436
GluI	GCNGC	2 cut(s)	23, 300
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	108, 162
Hin1II	CATG	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	211, 284
HpaII	CCGG	2 cut(s)	108, 162
HphI	GGTGA	2 cut(s)	293, 377
Hpy166II	GTNNAC	3 cut(s)	167, 317, 385
Hpy188I	TCNGA	2 cut(s)	150, 262
Hpy188III	TCNNGA	3 cut(s)	191, 288, 378
Hpy8I	GTNNAC	3 cut(s)	167, 317, 385
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	4 cut(s)	35, 314, 362, 389
HpyCH4IV	ACGT	2 cut(s)	28, 308
HpyCH4V	TGCA	3 cut(s)	11, 299, 341
HpySE526I	ACGT	2 cut(s)	28, 308
Hsp92II	CATG	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	110, 187
LpnPI	CCDG	9 cut(s)	46, 54, 121, 138, 175, 183, 221, 316, 363
Lsp1109I	GCAGC	2 cut(s)	34, 311
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	2 cut(s)	99, 436
MaeII	ACGT	2 cut(s)	28, 308
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	112, 189
MboI	GATC	2 cut(s)	110, 187
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	202, 409
MnlI	CCTC	4 cut(s)	45, 78, 229, 438
MseI	TTAA	2 cut(s)	47, 329
MspI	CCGG	2 cut(s)	108, 162
Mva1269I	GAATGC	1 cut(s)	301
NdeI	CATATG	2 cut(s)	133, 348
NdeII	GATC	2 cut(s)	110, 187
NlaIII	CATG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	211, 284
Pfl23II	CGTACG	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	24, 301
Ppu21I	YACGTR	1 cut(s)	29
PspLI	CGTACG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	59, 311
RsaNI	GTAC	2 cut(s)	58, 310
SaqAI	TTAA	2 cut(s)	47, 329
SatI	GCNGC	2 cut(s)	23, 300
Sau3AI	GATC	2 cut(s)	110, 187
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	8 cut(s)	27, 31, 56, 210, 231, 240, 311, 401
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	98
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	2 cut(s)	202, 409
SspMI	CTAG	2 cut(s)	99, 436
TaaI	ACNGT	4 cut(s)	35, 314, 362, 389
TaiI	ACGT	2 cut(s)	31, 311
TasI	AATT	2 cut(s)	202, 409
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	211, 284
Tru1I	TTAA	2 cut(s)	47, 329
Tru9I	TTAA	2 cut(s)	47, 329
TscAI	CASTG	2 cut(s)	367, 420
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	22, 299
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	2 cut(s)	367, 420
XceI	RCATGY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	99, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.