Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42284874 .. 42286247

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGTTGTCACCTCTGCTCTTCATATGAATCCCAACACATTCAAAGATCCCCTCGTGTTCAATCCATGGCGTTGGAAGAACTTCATGCCTTTTGGTGGAGGAATGAGGCAATGTGCAGGATCAGAGTATAGTAGAGCTTTCTTAGCCACCTTTCTCCATGTCTTGGTCACCAAATACCTGTTCATTTTATCACTTCTCTCTGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

69

Amino Acids

7.93

Weight (kDa)

9.51

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 62	7e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AclWI	GGATC	2 cut(s)	41, 127
AfiI	CCNNNNNNNGG	2 cut(s)	95, 163
AgsI	TTSAA	2 cut(s)	43, 61
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	2 cut(s)	41, 127
Asp700I	GAANNNNTTC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	160
BauI	CACGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 163
Bse3DI	GCAATG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	95, 163
BseMI	GCAATG	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	95, 163
Bsp143I	GATC	2 cut(s)	46, 119
Bsp19I	CCATGG	1 cut(s)	65
BspPI	GGATC	2 cut(s)	41, 127
BspQI	GCTCTTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	46, 119
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	49, 122
BstMBI	GATC	2 cut(s)	46, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	65
CviAII	CATG	3 cut(s)	66, 85, 158
CviJI	RGCY	2 cut(s)	137, 146
CviKI_1	RGCY	2 cut(s)	137, 146
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	48, 121
DpnII	GATC	2 cut(s)	46, 119
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	69, 88, 161
FaiI	YATR	6 cut(s)	24, 26, 67, 86, 129, 159
FatI	CATG	3 cut(s)	65, 84, 157
FauNDI	CATATG	1 cut(s)	24
Hin1II	CATG	3 cut(s)	69, 88, 161
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	124, 202
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	69, 88, 161
Kzo9I	GATC	2 cut(s)	46, 119
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	2 cut(s)	102, 191
MaeIII	GTNAC	2 cut(s)	7, 166
MalI	GATC	2 cut(s)	48, 121
MboI	GATC	2 cut(s)	46, 119
MboII	GAAGA	2 cut(s)	11, 88
MflI	RGATCY	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	22, 62, 92, 99
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	2 cut(s)	46, 119
NlaIII	CATG	3 cut(s)	69, 88, 161
NmuCI	GTSAC	2 cut(s)	7, 166
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	46, 119
SetI	ASST	5 cut(s)	14, 139, 152, 180, 208
SgeI	CNNG	8 cut(s)	65, 67, 78, 97, 129, 170, 175, 190
StyI	CCWWGG	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	7, 166
Tsp45I	GTSAC	2 cut(s)	7, 166
TspDTI	ATGAA	4 cut(s)	11, 41, 73, 172
Van91I	CCANNNNNTGG	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.