Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

43841956 .. 43842171

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTGGACTGTGGTAGGATTGTGTTTAGTAGCTTTACTAGTGATATATGTCACTCGCCGGGTTAGCAAATGTAGAAATCCAAAATGCAATGGTGTTCTTCCTCCAGATTCAACATTGGGTTTGCCTCTCATTAGTGAGAGCCTCAGTTTGATCATTCCAATATACTCCCTGGATCTTCACCCTTTCATTAAGAAGAGACTTCAAAAGTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

71

Amino Acids

7.97

Weight (kDa)

9.66

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	111, 203
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	190
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	59, 170
BmrFI	CCNGG	2 cut(s)	59, 170
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	150, 172
BspCNI	CTCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	150, 172
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	153, 175
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	150, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	57, 168
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	2 cut(s)	32, 141
CviKI_1	RGCY	2 cut(s)	32, 141
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	152, 174
DpnII	GATC	2 cut(s)	150, 172
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	216
FaiI	YATR	4 cut(s)	46, 48, 163, 214
FatI	CATG	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	150
FspBI	CTAG	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	87
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	1 cut(s)	216
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	150, 172
LpnPI	CCDG	4 cut(s)	71, 117, 155, 182
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	152, 174
MboI	GATC	2 cut(s)	150, 172
MboII	GAAGA	3 cut(s)	89, 167, 205
MflI	RGATCY	1 cut(s)	172
MnlI	CCTC	3 cut(s)	111, 135, 152
MseI	TTAA	1 cut(s)	189
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	59, 170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	150, 172
NlaIII	CATG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	150, 172
ScrFI	CCNGG	2 cut(s)	59, 170
SetI	ASST	1 cut(s)	34
SgeI	CNNG	7 cut(s)	50, 66, 70, 71, 116, 181, 182
SpeI	ACTAGT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	57, 168
TaaI	ACNGT	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	175
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.