Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

45736434 .. 45737047

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTGGACTGTGGTAGGATTGTGTTTAGTAGCTTTGCTAGTGATATATGTCACTCGCCGGGTTAGCGAAAGGAGAAATCCAAAATGCAATAGTGTTCTTCGTCCAGGTTCAACAATATTGGGTTTGCCTCTCATTGGTGAGACCCTCAGTTTGATAATTCCAATCTACTCCCTGGATCTTCACCCTTTCATTAAGAAGAGACTTCAAAAATATGGGCTCATATTTCGGACAAGTATAGCCGGTAGACCAGTTGTTATATCAGCCGATCCTGAAATCAACAATTACCTGATTCAGCAAGAAGGGAAGCTACTTGAGGTATGGTACTTGGATACATTTTCCGAGATTTTCAAGCAAGATGGTGATTCACGAACGAATGCAGCCAGAACGGTTCACAAGTACTTGAGACACATTTTCTTGAGCACTTTGGTGCTGAGATCCTTAAGGAAAAGTTGCTCACCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

154

Amino Acids

17.58

Weight (kDa)

9.96

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	244
AclWI	GGATC	3 cut(s)	183, 260, 429
AfaI	GTAC	2 cut(s)	323, 398
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	111, 206, 349
AjnI	CCWGG	2 cut(s)	103, 171
AleI	CACNNNNGTG	1 cut(s)	425
AluBI	AGCT	2 cut(s)	32, 307
AluI	AGCT	2 cut(s)	32, 307
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	3 cut(s)	134, 193, 397
AlwI	GGATC	3 cut(s)	183, 260, 429
ApeKI	GCWGC	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	149, 173, 371, 447
BanII	GRGCYC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	105, 173
BciVI	GTATCC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	134, 193, 397
BfaI	CTAG	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	59, 105, 173
BmrFI	CCNGG	3 cut(s)	59, 105, 173
BpuEI	CTTGAG	3 cut(s)	332, 421, 436
BpuMI	CCSGG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	105, 173
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	160, 422
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	58, 240
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	3 cut(s)	134, 193, 397
BsmI	GAATGC	1 cut(s)	379
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	219, 422
Bsp143I	GATC	3 cut(s)	175, 265, 434
BspCNI	CTCAG	2 cut(s)	159, 423
BspPI	GGATC	3 cut(s)	183, 260, 429
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	175, 265, 434
Bst2UI	CCWGG	2 cut(s)	105, 173
Bst4CI	ACNGT	2 cut(s)	10, 388
Bst6I	CTCTTC	1 cut(s)	191
BstAFI	CTTAAG	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	146, 431
BstKTI	GATC	3 cut(s)	178, 268, 437
BstMAI	GTCTC	3 cut(s)	134, 193, 397
BstMBI	GATC	3 cut(s)	175, 265, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNI	CCWGG	2 cut(s)	105, 173
BstSCI	CCNGG	3 cut(s)	57, 103, 171
BstV1I	GCAGC	1 cut(s)	389
BstX2I	RGATCY	2 cut(s)	175, 434
BstYI	RGATCY	2 cut(s)	175, 434
BsuI	GTATCC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	322, 397
CviJI	RGCY	6 cut(s)	32, 217, 239, 263, 307, 380
CviKI_1	RGCY	6 cut(s)	32, 217, 239, 263, 307, 380
CviQI	GTAC	2 cut(s)	322, 397
DdeI	CTNAG	2 cut(s)	146, 431
DpnI	GATC	3 cut(s)	177, 267, 436
DpnII	GATC	3 cut(s)	175, 265, 434
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	103, 171
EcoT38I	GRGCYC	1 cut(s)	219
FaiI	YATR	7 cut(s)	46, 48, 213, 221, 236, 257, 319
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	378
HapII	CCGG	2 cut(s)	58, 240
HinfI	GANTC	2 cut(s)	289, 362
HpaII	CCGG	2 cut(s)	58, 240
HphI	GGTGA	4 cut(s)	149, 173, 371, 447
Hpy166II	GTNNAC	3 cut(s)	6, 245, 391
Hpy188I	TCNGA	2 cut(s)	228, 340
Hpy188III	TCNNGA	3 cut(s)	269, 366, 415
Hpy8I	GTNNAC	3 cut(s)	6, 245, 391
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	10, 388
HpyCH4V	TGCA	2 cut(s)	87, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	2 cut(s)	146, 431
Kzo9I	GATC	3 cut(s)	175, 265, 434
Lsp1109I	GCAGC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	177, 267, 436
MboI	GATC	3 cut(s)	175, 265, 434
MboII	GAAGA	3 cut(s)	89, 170, 208
MflI	RGATCY	2 cut(s)	175, 434
MhlI	GDGCHC	2 cut(s)	219, 422
MluCI	AATT	2 cut(s)	156, 280
MnlI	CCTC	3 cut(s)	138, 155, 307
MseI	TTAA	2 cut(s)	192, 440
MslI	CAYNNNNRTG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	2 cut(s)	58, 240
MspR9I	CCNGG	3 cut(s)	59, 105, 173
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	2 cut(s)	105, 173
MwoI	GCNNNNNNNGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	175, 265, 434
NmuCI	GTSAC	1 cut(s)	49
OliI	CACNNNNGTG	1 cut(s)	425
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	289, 362
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	103, 171
PspGI	CCWGG	2 cut(s)	103, 171
PsuI	RGATCY	2 cut(s)	175, 434
RsaI	GTAC	2 cut(s)	323, 398
RsaNI	GTAC	2 cut(s)	322, 397
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	192, 440
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	175, 265, 434
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	59, 105, 173
SduI	GDGCHC	2 cut(s)	219, 422
SetI	ASST	5 cut(s)	34, 109, 288, 309, 318
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	4 cut(s)	311, 400, 415, 439
SmoI	CTYRAG	4 cut(s)	311, 400, 415, 439
Sse9I	AATT	2 cut(s)	156, 280
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	57, 103, 171
TaaI	ACNGT	2 cut(s)	10, 388
TasI	AATT	2 cut(s)	156, 280
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	289, 362
Tru1I	TTAA	2 cut(s)	192, 440
Tru9I	TTAA	2 cut(s)	192, 440
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.