Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277759.1

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

165 .. 835

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgggtttgcctctcatcggtgagaccctcagtttgatcattccaagctactccctagatcttcaccctttcattaagaaaagacttgaaagatatggacctatatttcggactagtttggcgggtaggccagttgtgatatcagctgatcctgaattcaataacttcctttttcagcaagaagggaggtctgttgagatgtggtacttggatacattttcaaagatcttcgtgcatgaaggtgaatcaaagacaaatgcagttggcatcgttcacaagtacgtaaggagcattttcttgaatcactttggtgctgagaggcttaaggaaaagttgctccctgaaatacaagaattcgtcaacaaaagtctatgttcttggtcgagtcaggaatctgttgaagtgaaacatgctggctcagttgtaaatatcaatcccagtacttattcgcatattagtaatgcttatgatctcctgatgttcatgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

163

Amino Acids

18.62

Weight (kDa)

6.59

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	155, 353
AfaI	GTAC	3 cut(s)	206, 281, 442
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	5 cut(s)	89, 160, 222, 301, 401
AhlI	ACTAGT	1 cut(s)	113
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	48, 146
AluI	AGCT	2 cut(s)	48, 146
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	155, 353
ArsI	GACNNNNNNTTYG	4 cut(s)	16, 48, 90, 122
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	32, 56, 254
AvaII	GGWCC	1 cut(s)	98
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	17
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	2 cut(s)	56, 114
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	205
BglII	AGATCT	2 cut(s)	58, 225
BmcAI	AGTACT	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	131, 438
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	3 cut(s)	43, 306, 432
BseNI	ACTGG	2 cut(s)	131, 438
BshFI	GGCC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	36, 58, 148, 225, 469
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	42, 307, 431
BspPI	GGATC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	131, 438
BssMI	GATC	5 cut(s)	36, 58, 148, 225, 469
BstAFI	CTTAAG	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	3 cut(s)	29, 315, 418
BstKTI	GATC	5 cut(s)	39, 61, 151, 228, 472
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	5 cut(s)	36, 58, 148, 225, 469
BstNSI	RCATGY	1 cut(s)	413
BstSNI	TACGTA	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	58, 225
BstYI	RGATCY	2 cut(s)	58, 225
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	205, 280, 441
CviAII	CATG	3 cut(s)	236, 410, 484
CviJI	RGCY	5 cut(s)	48, 130, 146, 322, 417
CviKI_1	RGCY	5 cut(s)	48, 130, 146, 322, 417
CviQI	GTAC	3 cut(s)	205, 280, 441
DdeI	CTNAG	3 cut(s)	29, 315, 418
DpnI	GATC	5 cut(s)	38, 60, 150, 227, 471
DpnII	GATC	5 cut(s)	36, 58, 148, 225, 469
Eco105I	TACGTA	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	98
EcoRI	GAATTC	2 cut(s)	155, 353
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	3 cut(s)	239, 413, 487
FaiI	YATR	9 cut(s)	96, 104, 237, 373, 411, 453, 468, 485, 490
FatI	CATG	3 cut(s)	235, 409, 483
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	36
FspBI	CTAG	2 cut(s)	56, 114
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	239, 413, 487
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	245, 301, 385, 392
HphI	GGTGA	3 cut(s)	32, 56, 254
Hpy166II	GTNNAC	2 cut(s)	274, 361
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	4 cut(s)	152, 298, 389, 475
Hpy8I	GTNNAC	2 cut(s)	274, 361
HpyAV	CCTTC	2 cut(s)	176, 233
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	235, 260
HpyF3I	CTNAG	3 cut(s)	29, 315, 418
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	239, 413, 487
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	36, 58, 148, 225, 469
LmnI	GCTCC	2 cut(s)	288, 342
LpnPI	CCDG	7 cut(s)	144, 165, 354, 374, 399, 451, 488
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	56, 114
MaeII	ACGT	1 cut(s)	282
MalI	GATC	5 cut(s)	38, 60, 150, 227, 471
MboI	GATC	5 cut(s)	36, 58, 148, 225, 469
MboII	GAAGA	2 cut(s)	53, 220
MflI	RGATCY	2 cut(s)	58, 225
MluCI	AATT	2 cut(s)	155, 353
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	21, 38, 180, 312
MseI	TTAA	2 cut(s)	75, 324
MslI	CAYNNNNRTG	2 cut(s)	240, 309
MspA1I	CMGCKG	1 cut(s)	146
MspCI	CTTAAG	1 cut(s)	323
NdeII	GATC	5 cut(s)	36, 58, 148, 225, 469
NlaIII	CATG	3 cut(s)	239, 413, 487
NspI	RCATGY	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	245, 301, 392
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	58, 225
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	3 cut(s)	206, 281, 442
RsaNI	GTAC	3 cut(s)	205, 280, 441
RseI	CAYNNNNRTG	2 cut(s)	240, 309
SaqAI	TTAA	2 cut(s)	75, 324
Sau3AI	GATC	5 cut(s)	36, 58, 148, 225, 469
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	1 cut(s)	394
SetI	ASST	6 cut(s)	50, 103, 148, 191, 244, 285
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	240, 309
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	283
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	2 cut(s)	155, 353
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	56, 114
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	383
TasI	AATT	2 cut(s)	155, 353
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	245, 301, 392
Tru1I	TTAA	2 cut(s)	75, 324
Tru9I	TTAA	2 cut(s)	75, 324
TspDTI	ATGAA	3 cut(s)	61, 252, 472
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	2 cut(s)	155, 353
XceI	RCATGY	1 cut(s)	413
XspI	CTAG	2 cut(s)	56, 114
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.