Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

18621100 .. 18622480

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACACCCGAACGCCGTCGACGGCATCTTTCACGCTGCGAAAGACAACGTATAAATTATCGAGCAAGAATGTTATCTATGAGTTCAGAACGAAGGCAAGAATATCTTCAAAGAAGACGTGCAAACTATCATGCTCGCAGTTTTACAGGTGGAGGAACCAACACTTCTTCATATAGTGGAATAGCATCTGCCTCAGCAGTTCATGAAGGGGAAATTCCTCCACCGACGATTGACCCTAATATTGGCCATAATCAAAGTCAACAAAATTTTCACCACCCAAATCAACCTATGGTTGCACGGCGCTTAACCCACATTAGGCGTATGGCACGTTCATGCATAATTCCAAGCACAGCAAATCAAGGAGAATCAAGCACAGTAGAGAATTTGGGAGAGACAAGCATAGCACAACAGTTTCAGCAATCTTTGTATGAAGATGGACATCGGTTTCAGCACTCTGTCTATGAACGTGGAGAATATTCAAGCAGAGCACAAGAGTTTCAGCAACCAGTCTATGAACATGGAGAGACTAACAGGCCCCGAGAGTTTCGGCAATCTACCTATGAACATGGAGAGACAAGCAGAGACCAACAACTTCAGCAATCTGTTTATGAACATGGAGAGAGAAGTATAGCACAAGAAATTAGGTATTCGGTTCCTGAACAAAGAGAATTAAGGTCACATTCCAACCATGTGAGTCGAAGGCACACATCAAATCCACGTCATAATTGTGCCAGGAGTTATTATGAAAGTCCAGCCTTCCGGAGAATTCAACTACCAGCCCCATCAATATGTCAACATTGTGCAGCAAAACTCTTCCATCTTGAGTCTAAAAACTTTTGTTGTTTGAATGGGAAGACTAGGTTTCCCTCAATACCAGCACCAATTGAACTTCTTCAATTATTTTCCGAGCAAACGACAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

308

Amino Acids

35.79

Weight (kDa)

9.47

Isoelectric Point (pI)

77.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	759
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	4 cut(s)	213, 265, 382, 765
AcuI	CTGAAG	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	242, 315
AgsI	TTSAA	6 cut(s)	110, 480, 770, 847, 887, 896
AjiI	CACGTC	2 cut(s)	119, 719
AjnI	CCWGG	1 cut(s)	731
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	4 cut(s)	386, 518, 566, 576
Ama87I	CYCGRG	1 cut(s)	537
Aor13HI	TCCGGA	1 cut(s)	759
AoxI	GGCC	2 cut(s)	244, 533
ApeKI	GCWGC	2 cut(s)	36, 803
ApoI	RAATTY	4 cut(s)	213, 265, 382, 765
Asp700I	GAANNNNTTC	2 cut(s)	105, 891
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	121, 860
Bbv12I	GWGCWC	1 cut(s)	490
BbvCI	CCTCAGC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	23, 815
BccI	CCATC	3 cut(s)	428, 790, 825
BceAI	ACGGC	2 cut(s)	38, 314
BciT130I	CCWGG	1 cut(s)	733
BcoDI	GTCTC	4 cut(s)	386, 518, 566, 576
BfaI	CTAG	1 cut(s)	858
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	2 cut(s)	37, 804
BlsI	GCNGC	2 cut(s)	38, 805
Bme1390I	CCNGG	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	537
BmgBI	CACGTC	2 cut(s)	119, 719
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	3 cut(s)	157, 536, 654
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	2 cut(s)	34, 194
BpiI	GAAGAC	2 cut(s)	121, 860
Bpu10I	CCTNAGC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	576
BsaWI	WCCGGW	1 cut(s)	759
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 315
Bse1I	ACTGG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	242, 315
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	23, 815
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	2 cut(s)	246, 535
BsiHKAI	GWGCWC	1 cut(s)	490
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	760
BslI	CCNNNNNNNGG	2 cut(s)	242, 315
BsmAI	GTCTC	4 cut(s)	386, 518, 566, 576
BsnI	GGCC	2 cut(s)	246, 535
Bso31I	GGTCTC	1 cut(s)	576
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp13I	TCCGGA	1 cut(s)	759
BspANI	GGCC	2 cut(s)	246, 535
BspCNI	CTCAG	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	157, 536, 654
BspTNI	GGTCTC	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	2 cut(s)	376, 411
Bst6I	CTCTTC	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstMAI	GTCTC	4 cut(s)	386, 518, 566, 576
BstNI	CCWGG	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	23, 815
BstV2I	GAAGAC	2 cut(s)	121, 860
BsuRI	GGCC	2 cut(s)	246, 535
BtrI	CACGTC	2 cut(s)	119, 719
Cac8I	GCNNGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	534
CviAII	CATG	7 cut(s)	131, 203, 333, 518, 566, 614, 689
CviJI	RGCY	4 cut(s)	246, 535, 755, 779
CviKI_1	RGCY	4 cut(s)	246, 535, 755, 779
DdeI	CTNAG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
Eco31I	GGTCTC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	765
EcoRII	CCWGG	1 cut(s)	731
EcoT22I	ATGCAT	1 cut(s)	338
FaeI	CATG	7 cut(s)	134, 206, 336, 521, 569, 617, 692
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	7 cut(s)	130, 202, 332, 517, 565, 613, 688
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	37, 804
Fsp4HI	GCNGC	2 cut(s)	37, 804
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	2 cut(s)	37, 804
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	246, 535
HapII	CCGG	1 cut(s)	760
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	7 cut(s)	134, 206, 336, 521, 569, 617, 692
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	3 cut(s)	20, 260, 794
HindII	GTYRAC	3 cut(s)	20, 260, 794
HinfI	GANTC	3 cut(s)	365, 694, 824
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	20, 260, 794
Hpy188I	TCNGA	2 cut(s)	88, 907
Hpy188III	TCNNGA	4 cut(s)	203, 656, 760, 821
Hpy8I	GTNNAC	3 cut(s)	20, 260, 794
Hpy99I	CGWCG	3 cut(s)	21, 24, 229
HpyAV	CCTTC	5 cut(s)	87, 200, 693, 766, 914
HpyCH4III	ACNGT	2 cut(s)	376, 411
HpyCH4IV	ACGT	5 cut(s)	49, 118, 328, 466, 718
HpyCH4V	TGCA	4 cut(s)	122, 296, 336, 803
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	5 cut(s)	49, 118, 328, 466, 718
Hsp92II	CATG	7 cut(s)	134, 206, 336, 521, 569, 617, 692
HspAI	GCGC	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	759
Lsp1109I	GCAGC	2 cut(s)	23, 815
LweI	GCATC	2 cut(s)	34, 194
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	5 cut(s)	49, 118, 328, 466, 718
MaeIII	GTNAC	1 cut(s)	675
MboII	GAAGA	7 cut(s)	98, 126, 159, 443, 805, 865, 884
MfeI	CAATTG	1 cut(s)	882
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	246
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	703, 833
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	4 cut(s)	146, 202, 228, 877
Mox20I	TGGCCA	1 cut(s)	246
Mph1103I	ATGCAT	1 cut(s)	338
MroI	TCCGGA	1 cut(s)	759
MroXI	GAANNNNTTC	2 cut(s)	105, 891
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	2 cut(s)	305, 671
MslI	CAYNNNNRTG	3 cut(s)	331, 726, 787
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	1 cut(s)	733
MunI	CAATTG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	733
NlaIII	CATG	7 cut(s)	134, 206, 336, 521, 569, 617, 692
NlaIV	GGNNCC	3 cut(s)	157, 536, 654
NmuCI	GTSAC	1 cut(s)	675
NsiI	ATGCAT	1 cut(s)	338
PagI	TCATGA	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	105, 891
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	38, 805
PleI	GAGTC	2 cut(s)	702, 832
PpsI	GAGTC	2 cut(s)	702, 832
Psp6I	CCWGG	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	731
PspN4I	GGNNCC	3 cut(s)	157, 536, 654
PspPI	GGNCC	1 cut(s)	534
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
RseI	CAYNNNNRTG	3 cut(s)	331, 726, 787
SalI	GTCGAC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	305, 671
SatI	GCNGC	2 cut(s)	37, 804
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	2 cut(s)	703, 833
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	34, 194
SgrDI	CGTCGACG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	331, 726, 787
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SspI	AATATT	2 cut(s)	241, 476
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	1 cut(s)	731
TaaI	ACNGT	2 cut(s)	376, 411
TaiI	ACGT	5 cut(s)	52, 121, 331, 469, 721
TaqI	TCGA	3 cut(s)	19, 61, 697
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	305, 671
Tru9I	TTAA	2 cut(s)	305, 671
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	2 cut(s)	36, 803
Tsp45I	GTSAC	1 cut(s)	675
XapI	RAATTY	4 cut(s)	213, 265, 382, 765
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	105, 891
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.