Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

25418590 .. 25424334

Gene Structure 5745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013058

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGCTTGCCTCTCATTGGAGAGACCTTAAGTTTGATCATTCCAAGCGACTCCCTAGATGTTCATCCGTTCATTGAGAAGAGACTTCAAAAATATGGGCCTATATTTTGGACTAGTTTGGCGGGTAGACCTGTTGTAATAGCAGTTGATCCTAAGTTCAATAACTACATATTTCAGCAAGAAGGCAAGTCTGTTGAACTATGGTACATGGATACAATATCAAAAGTCTTTGTAGGCGATACCAAGGCAAATGCAACTGGTGTCATCCACAAGTACATAAGGAGCACATTCATGAAACACTTCGGTGCTGAGAACCTCAAGGAAAAGTTGCTCCCTCAAATGGAGGATTGCGTCTACAAAACTCTTCATTCGTGGTCTAGTAGGGCATTTGTTGAAGTGAAGCATGCTGCCTCAGTTATGGTTTTGAATTTTAGTGCAAAGCAGATGATCAGTTATGATGCTAAAAAATCAACTGAGAACCTGAGTGAGAAATTTGCTGAAGTCATTAAAGGTCTTATATCCTTTCCTTTGAATATTCCTGTTATAGTCATGGTAGTCCGAGACTTCTTGGGGGAGGCAGCCTTTTTAGTAGTCCGAGACTTCTTGGGGGAGTTAGCCTTTTTGGTAGTCCGACCCTTCTTGGGACAGGCTGCTTTTTTGGTAGTTTTAGATATGGGATTGGTAGCCTTTTTGGTTGATGTCTCAGCCCCTTCAATTGCAGGAATTGGTGTCGCTGGTTTTGTCCTCGATCGTTTCATTGCCACAGCCTTAATCCTTAGAGCTATGGCTCTTGCAGAACTTGATGATCCAGTAGAGGGCGACATCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

277

Amino Acids

30.53

Weight (kDa)

5.77

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 174	9.7e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	127, 354
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	143, 800
AcsI	RAATTY	2 cut(s)	427, 491
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	206, 275
AfiI	CCNNNNNNNGG	4 cut(s)	17, 340, 641, 815
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	7 cut(s)	89, 160, 197, 395, 427, 532, 714
AhlI	ACTAGT	1 cut(s)	113
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	782
AluI	AGCT	1 cut(s)	782
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	5 cut(s)	17, 76, 555, 591, 706
AlwI	GGATC	2 cut(s)	143, 800
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	407, 578, 650
ApoI	RAATTY	2 cut(s)	427, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	394, 590, 637
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	2 cut(s)	36, 447
BcoDI	GTCTC	5 cut(s)	17, 76, 555, 591, 706
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	56, 114, 378
BfrI	CTTAAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	3 cut(s)	408, 579, 651
BlsI	GCNGC	3 cut(s)	409, 580, 652
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 340, 641, 815
Bse1I	ACTGG	2 cut(s)	262, 809
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	64, 264
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	17, 340, 641, 815
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	5 cut(s)	300, 426, 465, 473, 717
BseNI	ACTGG	2 cut(s)	262, 809
BseXI	GCAGC	3 cut(s)	394, 590, 637
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	4 cut(s)	17, 340, 641, 815
BsmAI	GTCTC	5 cut(s)	17, 76, 555, 591, 706
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	36, 148, 447, 748, 805
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	5 cut(s)	301, 425, 466, 474, 716
BspHI	TCATGA	1 cut(s)	291
BspPI	GGATC	2 cut(s)	143, 800
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	262, 809
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	5 cut(s)	36, 148, 447, 748, 805
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	74, 369
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	8, 405
BstDEI	CTNAG	7 cut(s)	153, 309, 412, 474, 482, 703, 776
BstF5I	GGATG	2 cut(s)	64, 264
BstKTI	GATC	5 cut(s)	39, 151, 450, 751, 808
BstMAI	GTCTC	5 cut(s)	17, 76, 555, 591, 706
BstMBI	GATC	5 cut(s)	36, 148, 447, 748, 805
BstMCI	CGRYCG	1 cut(s)	751
BstNSI	RCATGY	1 cut(s)	407
BstV1I	GCAGC	3 cut(s)	394, 590, 637
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	64, 264
Cac8I	GCNNGC	2 cut(s)	8, 405
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	205, 274
CviAII	CATG	4 cut(s)	208, 292, 404, 550
CviQI	GTAC	2 cut(s)	205, 274
DdeI	CTNAG	7 cut(s)	153, 309, 412, 474, 482, 703, 776
DpnI	GATC	5 cut(s)	38, 150, 449, 750, 807
DpnII	GATC	5 cut(s)	36, 148, 447, 748, 805
Eam1104I	CTCTTC	2 cut(s)	74, 369
EarI	CTCTTC	2 cut(s)	74, 369
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	211, 295, 407, 553
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	4 cut(s)	207, 291, 403, 549
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	36, 447
FblI	GTMKAC	2 cut(s)	127, 354
Fnu4HI	GCNGC	3 cut(s)	408, 579, 651
FokI	GGATG	2 cut(s)	51, 251
Fsp4HI	GCNGC	3 cut(s)	408, 579, 651
FspBI	CTAG	3 cut(s)	56, 114, 378
GluI	GCNGC	3 cut(s)	408, 579, 651
HaeIII	GGCC	1 cut(s)	100
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	211, 295, 407, 553
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	128, 355
Hpy188I	TCNGA	3 cut(s)	560, 596, 632
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	2 cut(s)	128, 355
HpyAV	CCTTC	3 cut(s)	176, 646, 720
HpyCH4V	TGCA	4 cut(s)	254, 437, 719, 794
HpyF3I	CTNAG	7 cut(s)	153, 309, 412, 474, 482, 703, 776
Hsp92II	CATG	4 cut(s)	211, 295, 407, 553
Ksp22I	TGATCA	2 cut(s)	36, 447
Kzo9I	GATC	5 cut(s)	36, 148, 447, 748, 805
LmnI	GCTCC	2 cut(s)	282, 336
LpnPI	CCDG	8 cut(s)	144, 243, 494, 552, 632, 705, 720, 822
Lsp1109I	GCAGC	3 cut(s)	394, 590, 637
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	56, 114, 378
MalI	GATC	5 cut(s)	38, 150, 449, 750, 807
MboI	GATC	5 cut(s)	36, 148, 447, 748, 805
MboII	GAAGA	2 cut(s)	91, 356
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	427, 491, 714, 723
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	8 cut(s)	21, 326, 337, 345, 421, 568, 755, 808
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	3 cut(s)	29, 507, 770
MslI	CAYNNNNRTG	2 cut(s)	290, 303
MspCI	CTTAAG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	714
NdeII	GATC	5 cut(s)	36, 148, 447, 748, 805
NlaIII	CATG	4 cut(s)	211, 295, 407, 553
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	407
PagI	TCATGA	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	409, 580, 652
Ple19I	CGATCG	1 cut(s)	751
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	751
RsaI	GTAC	2 cut(s)	206, 275
RsaNI	GTAC	2 cut(s)	205, 274
RseI	CAYNNNNRTG	2 cut(s)	290, 303
SaqAI	TTAA	3 cut(s)	29, 507, 770
SatI	GCNGC	3 cut(s)	408, 579, 651
Sau3AI	GATC	5 cut(s)	36, 148, 447, 748, 805
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	29, 133, 318, 483, 514, 784
SfaNI	GCATC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	290, 303
SmlI	CTYRAG	2 cut(s)	28, 317
SmoI	CTYRAG	2 cut(s)	28, 317
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	4 cut(s)	427, 491, 714, 723
SsiI	CCGC	1 cut(s)	122
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	3 cut(s)	56, 114, 378
StyI	CCWWGG	1 cut(s)	243
TaqI	TCGA	1 cut(s)	747
TasI	AATT	4 cut(s)	427, 491, 714, 723
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	29, 507, 770
Tru9I	TTAA	3 cut(s)	29, 507, 770
TseI	GCWGC	3 cut(s)	407, 578, 650
TspDTI	ATGAA	6 cut(s)	53, 61, 280, 308, 356, 745
TspGWI	ACGGA	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	28
XapI	RAATTY	2 cut(s)	427, 491
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	2 cut(s)	127, 354
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	3 cut(s)	56, 114, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.