Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

36087575 .. 36088402

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG328600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGGACTGAGGTGGGATTGTGTTTAGTAGCATTTCTGGTGATATACATCACCCACTGGATTATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACACTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCAGACTAGTTTGGCAGGTAGGCCCGTTGTGATATCAGCTAATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTAAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCTGGAAGGTGAATCAAAGATAAATGCAGTTGGCATCGTTCACAAATACGTAAGGAGCGCTTTCTTGAATCACTTTGGCGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAATGTTTATGTTCTTGGTCAATTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTAAATTTTAGTGCAAAGCAGATGATTAGTTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

192

Amino Acids

21.92

Weight (kDa)

9.05

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	266, 464, 544
AfaI	GTAC	1 cut(s)	317
AfeI	AGCGCT	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	111, 200, 271, 333, 412, 512
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	159, 257
AluI	AGCT	2 cut(s)	159, 257
Alw26I	GTCTC	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	266, 464, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AspLEI	GCGC	2 cut(s)	404, 425
AspS9I	GGNCC	2 cut(s)	209, 240
AsuHPI	GGTGA	5 cut(s)	43, 52, 143, 167, 365
AvaII	GGWCC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	167, 225
BfoI	RGCGCY	2 cut(s)	405, 426
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	2 cut(s)	169, 336
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	209, 240
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	154, 417, 543
BseNI	ACTGG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	147, 169, 336
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	3 cut(s)	153, 418, 542
BspLI	GGNNCC	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	147, 169, 336
Bst2UI	CCWGG	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	4 cut(s)	9, 140, 426, 529
BstH2I	RGCGCY	2 cut(s)	405, 426
BstHHI	GCGC	2 cut(s)	404, 425
BstKTI	GATC	3 cut(s)	150, 172, 339
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	147, 169, 336
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	103
BstSNI	TACGTA	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	169, 336
BstYI	RGATCY	2 cut(s)	169, 336
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	404, 425
Cfr13I	GGNCC	2 cut(s)	209, 240
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	5 cut(s)	159, 241, 257, 433, 528
CviKI_1	RGCY	5 cut(s)	159, 241, 257, 433, 528
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	9, 140, 426, 529
DpnI	GATC	3 cut(s)	149, 171, 338
DpnII	GATC	3 cut(s)	147, 169, 336
Eco105I	TACGTA	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	209
Eco47III	AGCGCT	1 cut(s)	403
EcoRI	GAATTC	2 cut(s)	266, 464
EcoRII	CCWGG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	1 cut(s)	524
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	147
FspBI	CTAG	2 cut(s)	167, 225
GlaI	GCGC	2 cut(s)	403, 424
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	2 cut(s)	405, 426
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	404, 425
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	2 cut(s)	402, 423
HinP1I	GCGC	2 cut(s)	402, 423
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	356, 412, 503
HphI	GGTGA	5 cut(s)	43, 52, 143, 167, 365
Hpy166II	GTNNAC	3 cut(s)	6, 385, 472
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	3 cut(s)	263, 409, 500
Hpy8I	GTNNAC	3 cut(s)	6, 385, 472
HpyAV	CCTTC	2 cut(s)	287, 344
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	87, 371, 554
HpyF3I	CTNAG	4 cut(s)	9, 140, 426, 529
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	2 cut(s)	402, 423
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	147, 169, 336
LmnI	GCTCC	2 cut(s)	399, 453
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	167, 225
MaeII	ACGT	1 cut(s)	393
MalI	GATC	3 cut(s)	149, 171, 338
MboI	GATC	3 cut(s)	147, 169, 336
MboII	GAAGA	3 cut(s)	89, 164, 331
MflI	RGATCY	2 cut(s)	169, 336
MluCI	AATT	4 cut(s)	266, 464, 495, 544
MnlI	CCTC	6 cut(s)	4, 66, 111, 132, 291, 423
MseI	TTAA	2 cut(s)	306, 435
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	147, 169, 336
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	356, 412, 503
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	209, 240
PsuI	RGATCY	2 cut(s)	169, 336
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	306, 435
Sau3AI	GATC	3 cut(s)	147, 169, 336
Sau96I	GGNCC	2 cut(s)	209, 240
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	9 cut(s)	15, 109, 161, 214, 238, 259, 302, 355, 396
SfaNI	GCATC	1 cut(s)	387
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SnaBI	TACGTA	1 cut(s)	394
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	4 cut(s)	266, 464, 495, 544
SspMI	CTAG	2 cut(s)	167, 225
StyD4I	CCNGG	1 cut(s)	103
TaiI	ACGT	1 cut(s)	396
TasI	AATT	4 cut(s)	266, 464, 495, 544
TfiI	GAWTC	3 cut(s)	356, 412, 503
Tru1I	TTAA	2 cut(s)	306, 435
Tru9I	TTAA	2 cut(s)	306, 435
TscAI	CASTG	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	80, 172
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	3 cut(s)	266, 464, 544
XceI	RCATGY	1 cut(s)	524
XspI	CTAG	2 cut(s)	167, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.