Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42615718 .. 42618974

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTGGACGGAGGTGGGATTGTGTTTAGTAGCATTTCTGGTGATATACATCACCCACTGGATTATCAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATTGGTGAGACCCTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATTAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCGGGTAGGCCAGTTGTGATATCAGCTGATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTGAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCATGAAGGTGAATCAAAAACAAATGCAGTTGGCATCGTTCACAAGTACGTAAGGAGCATTTTCTTGAATCACTTTGGTGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAAAGTCTATGTTCTTGGTCAAGTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTTAATTTTAGCGCAAAGCAGATGATTAGTTATGATGCTGAAAAATCTGCTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAACGACCATGTTGAGAGATATGCTCAAGGAGAGACACGATTCACCTGAGACCCAACATGGAGATTTCCTTGATCAAATTGCAAATGACATGGATAAGGAGAAGTTTTTATCACAGGATTTTAGTGTTCAGTTGGTGTTCGGGGGCTTATTCGCTACCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATCCTTCAGTCTTTCAAGAGTTGACTGCTGAGCATGAAGCTATTCTCAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACCCTTCGGTTGGGTAATGTTGCACCAGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATTTACAATCCCAAAAGGTTGGACGATTATGGTTGTCACGTCTGCGCTTCAGTTAAATCCCAGCACATTCGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGTACGTGTGTGTGGTTCAGTTTCATTGTCATTTGTGCAAATAACTTCAAATTTGGGTAGGGAACTAATATTACTTTATACAAAATTGAATGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

435

Amino Acids

49.49

Weight (kDa)

6.61

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 403	1.4e-43	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	4 cut(s)	254, 962, 1172, 1185
AcsI	RAATTY	3 cut(s)	266, 464, 1258
AcuI	CTGAAG	4 cut(s)	874, 897, 1004, 1136
AfaI	GTAC	4 cut(s)	317, 392, 679, 1212
AfiI	CCNNNNNNNGG	5 cut(s)	128, 694, 1045, 1099, 1100
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	1213
AhlI	ACTAGT	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	1143
AjnI	CCWGG	3 cut(s)	103, 655, 1060
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	159, 257, 947, 1079
AluI	AGCT	4 cut(s)	159, 257, 947, 1079
Alw26I	GTCTC	4 cut(s)	128, 724, 740, 1080
AlwI	GGATC	4 cut(s)	254, 962, 1172, 1185
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	266, 464, 1258
ArsI	GACNNNNNNTTYG	4 cut(s)	127, 159, 201, 233
Asp700I	GAANNNNTTC	2 cut(s)	948, 1038
AspLEI	GCGC	2 cut(s)	554, 1150
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	6 cut(s)	43, 52, 143, 167, 365, 732
AvaII	GGWCC	1 cut(s)	209
BaeI	ACNNNNGTAYC	2 cut(s)	1202, 1235
BamHI	GGATCC	1 cut(s)	1177
BccI	CCATC	1 cut(s)	620
BciT130I	CCWGG	3 cut(s)	105, 657, 1062
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	2 cut(s)	147, 769
BcoDI	GTCTC	4 cut(s)	128, 724, 740, 1080
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	167, 225
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	2 cut(s)	169, 336
BlpI	GCTNAGC	1 cut(s)	936
Bme1390I	CCNGG	3 cut(s)	105, 657, 1062
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	1143
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	77, 1179
BmrFI	CCNGG	3 cut(s)	105, 657, 1062
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	3 cut(s)	387, 565, 916
BmuI	ACTGGG	1 cut(s)	1088
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	707
Bsa29I	ATCGAT	1 cut(s)	1004
BsaAI	YACGTR	2 cut(s)	394, 1214
BsaBI	GATNNNNATC	1 cut(s)	47
BsaI	GGTCTC	2 cut(s)	128, 740
BsaJI	CCNNGG	3 cut(s)	655, 656, 1196
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 694, 1045, 1099, 1100
Bse1I	ACTGG	3 cut(s)	62, 242, 1094
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	3 cut(s)	105, 657, 1062
BseCI	ATCGAT	1 cut(s)	1004
BseDI	CCNNGG	3 cut(s)	655, 656, 1196
BseGI	GGATG	3 cut(s)	907, 997, 1089
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	5 cut(s)	128, 694, 1045, 1099, 1100
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	6 cut(s)	154, 417, 543, 590, 735, 927
BseNI	ACTGG	3 cut(s)	62, 242, 1094
BseYI	CCCAGC	1 cut(s)	1163
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	5 cut(s)	128, 694, 1045, 1099, 1100
BsmAI	GTCTC	4 cut(s)	128, 724, 740, 1080
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	2 cut(s)	128, 740
Bsp143I	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	6 cut(s)	153, 418, 542, 591, 736, 928
BspDI	ATCGAT	1 cut(s)	1004
BspLI	GGNNCC	2 cut(s)	77, 1179
BspPI	GGATC	4 cut(s)	254, 962, 1172, 1185
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	128, 740
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	62, 242, 1094
BssECI	CCNNGG	3 cut(s)	655, 656, 1196
BssMI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
BssT1I	CCWWGG	1 cut(s)	1196
Bst2UI	CCWGG	3 cut(s)	105, 657, 1062
Bst6I	CTCTTC	1 cut(s)	1023
BstAFI	CTTAAG	1 cut(s)	434
BstBAI	YACGTR	2 cut(s)	394, 1214
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	6 cut(s)	140, 426, 529, 599, 744, 936
BstDSI	CCRYGG	1 cut(s)	1196
BstF5I	GGATG	3 cut(s)	907, 997, 1089
BstHHI	GCGC	2 cut(s)	554, 1150
BstKTI	GATC	7 cut(s)	150, 172, 262, 339, 772, 970, 1180
BstMAI	GTCTC	4 cut(s)	128, 724, 740, 1080
BstMBI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
BstMWI	GCNNNNNNNGC	1 cut(s)	878
BstNI	CCWGG	3 cut(s)	105, 657, 1062
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	103, 655, 1060
BstSNI	TACGTA	1 cut(s)	394
BstX2I	RGATCY	4 cut(s)	169, 336, 967, 1177
BstXI	CCANNNNNNTGG	2 cut(s)	1122, 1203
BstYI	RGATCY	4 cut(s)	169, 336, 967, 1177
Bsu15I	ATCGAT	1 cut(s)	1004
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	1004
BtgI	CCRYGG	1 cut(s)	1196
BtrI	CACGTC	1 cut(s)	1143
BtsCI	GGATG	3 cut(s)	907, 997, 1089
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	55, 879
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	554, 1150
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	1004
Csp6I	GTAC	4 cut(s)	316, 391, 678, 1211
CviAII	CATG	8 cut(s)	347, 521, 706, 755, 787, 941, 987, 1197
CviQI	GTAC	4 cut(s)	316, 391, 678, 1211
DdeI	CTNAG	6 cut(s)	140, 426, 529, 599, 744, 936
DpnI	GATC	7 cut(s)	149, 171, 261, 338, 771, 969, 1179
DpnII	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Eam1104I	CTCTTC	1 cut(s)	1023
EarI	CTCTTC	1 cut(s)	1023
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	1196
Eco31I	GGTCTC	2 cut(s)	128, 740
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	4 cut(s)	874, 897, 1004, 1136
EcoRI	GAATTC	2 cut(s)	266, 464
EcoRII	CCWGG	3 cut(s)	103, 655, 1060
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	1196
ErhI	CCWWGG	1 cut(s)	1196
FaeI	CATG	8 cut(s)	350, 524, 709, 758, 790, 944, 990, 1200
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	8 cut(s)	346, 520, 705, 754, 786, 940, 986, 1196
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	147, 769
FokI	GGATG	3 cut(s)	894, 1004, 1076
FspBI	CTAG	2 cut(s)	167, 225
GlaI	GCGC	2 cut(s)	553, 1149
GsaI	CCCAGC	1 cut(s)	1167
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	554, 1150
Hin1II	CATG	8 cut(s)	350, 524, 709, 758, 790, 944, 990, 1200
Hin6I	GCGC	2 cut(s)	552, 1148
HinP1I	GCGC	2 cut(s)	552, 1148
HincII	GTYRAC	2 cut(s)	472, 930
HindII	GTYRAC	2 cut(s)	472, 930
HinfI	GANTC	5 cut(s)	356, 412, 503, 737, 860
HphI	GGTGA	6 cut(s)	43, 52, 143, 167, 365, 732
Hpy166II	GTNNAC	5 cut(s)	6, 385, 472, 896, 930
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	4 cut(s)	263, 409, 500, 923
Hpy8I	GTNNAC	5 cut(s)	6, 385, 472, 896, 930
HpyAV	CCTTC	7 cut(s)	287, 344, 688, 898, 921, 1049, 1201
HpyCH4IV	ACGT	3 cut(s)	393, 1142, 1213
HpyCH4V	TGCA	8 cut(s)	87, 346, 371, 665, 779, 902, 1058, 1246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	878
HpyF3I	CTNAG	6 cut(s)	140, 426, 529, 599, 744, 936
HpySE526I	ACGT	3 cut(s)	393, 1142, 1213
Hsp92II	CATG	8 cut(s)	350, 524, 709, 758, 790, 944, 990, 1200
HspAI	GCGC	2 cut(s)	552, 1148
Ksp22I	TGATCA	2 cut(s)	147, 769
Kzo9I	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
LmnI	GCTCC	2 cut(s)	399, 453
LweI	GCATC	3 cut(s)	387, 565, 916
MaeI	CTAG	2 cut(s)	167, 225
MaeII	ACGT	3 cut(s)	393, 1142, 1213
MaeIII	GTNAC	2 cut(s)	697, 1138
MalI	GATC	7 cut(s)	149, 171, 261, 338, 771, 969, 1179
MboI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
MboII	GAAGA	5 cut(s)	89, 164, 331, 977, 1010
MflI	RGATCY	4 cut(s)	169, 336, 967, 1177
MluCI	AATT	8 cut(s)	266, 464, 544, 673, 774, 1258, 1292, 1303
MmeI	TCCRAC	2 cut(s)	1103, 1184
MnlI	CCTC	8 cut(s)	4, 66, 111, 132, 149, 291, 423, 1168
MroXI	GAANNNNTTC	2 cut(s)	948, 1038
MseI	TTAA	5 cut(s)	186, 435, 543, 1157, 1185
MslI	CAYNNNNRTG	3 cut(s)	351, 420, 985
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	3 cut(s)	105, 657, 1062
MvaI	CCWGG	3 cut(s)	105, 657, 1062
MwoI	GCNNNNNNNGC	1 cut(s)	878
NcoI	CCATGG	1 cut(s)	1196
NdeII	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
NlaIII	CATG	8 cut(s)	350, 524, 709, 758, 790, 944, 990, 1200
NlaIV	GGNNCC	2 cut(s)	77, 1179
NmuCI	GTSAC	1 cut(s)	1138
NspI	RCATGY	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	656
PdmI	GAANNNNTTC	2 cut(s)	948, 1038
PfeI	GAWTC	5 cut(s)	356, 412, 503, 737, 860
Ppu21I	YACGTR	2 cut(s)	394, 1214
Psp6I	CCWGG	3 cut(s)	103, 655, 1060
PspFI	CCCAGC	1 cut(s)	1163
PspGI	CCWGG	3 cut(s)	103, 655, 1060
PspN4I	GGNNCC	2 cut(s)	77, 1179
PspPI	GGNCC	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	1263, 1295
PsuI	RGATCY	4 cut(s)	169, 336, 967, 1177
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	317, 392, 679, 1212
RsaNI	GTAC	4 cut(s)	316, 391, 678, 1211
RseI	CAYNNNNRTG	3 cut(s)	351, 420, 985
SaqAI	TTAA	5 cut(s)	186, 435, 543, 1157, 1185
Sau3AI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	105, 657, 1062
SfaNI	GCATC	3 cut(s)	387, 565, 916
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	3 cut(s)	351, 420, 985
SmlI	CTYRAG	2 cut(s)	434, 722
SmoI	CTYRAG	2 cut(s)	434, 722
SnaBI	TACGTA	1 cut(s)	394
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	8 cut(s)	266, 464, 544, 673, 774, 1258, 1292, 1303
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	1278
SspMI	CTAG	2 cut(s)	167, 225
StyD4I	CCNGG	3 cut(s)	103, 655, 1060
StyI	CCWWGG	1 cut(s)	1196
TaiI	ACGT	3 cut(s)	396, 1145, 1216
TaqI	TCGA	2 cut(s)	1004, 1173
TasI	AATT	8 cut(s)	266, 464, 544, 673, 774, 1258, 1292, 1303
TfiI	GAWTC	5 cut(s)	356, 412, 503, 737, 860
Tru1I	TTAA	5 cut(s)	186, 435, 543, 1157, 1185
Tru9I	TTAA	5 cut(s)	186, 435, 543, 1157, 1185
TscAI	CASTG	2 cut(s)	62, 879
TseFI	GTSAC	1 cut(s)	1138
Tsp45I	GTSAC	1 cut(s)	1138
TspDTI	ATGAA	5 cut(s)	172, 363, 957, 1008, 1221
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	62, 879
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	3 cut(s)	266, 464, 1258
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	948, 1038
XspI	CTAG	2 cut(s)	167, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.