Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

26234164 .. 26234573

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1133400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCCGTTTGGTGGCGGATTAAGGCAATCTGCAGGGGCTGAGTTCAGCAGAGCGTACTTGTCCACCTTTCTCCATGTTTTGCTTACCAAATATAGGTGGACAACAATCATCAAAGGCGCACGCATTTCTGGAGGGCCTATGTTGGCATTCGGGGATGGCACTCACATTAAGTTCTCGGAGAAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

64

Amino Acids

6.92

Weight (kDa)

10.37

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	11, 93
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	134
BccI	CCATC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 93
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	11, 93
BseMII	CTCAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	11, 93
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	121
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	2 cut(s)	38, 136
CviKI_1	RGCY	2 cut(s)	38, 136
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	134
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	75, 93, 140
FatI	CATG	1 cut(s)	73
FokI	GGATG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	63, 99
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	2 cut(s)	63, 99
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	1 cut(s)	117
LpnPI	CCDG	2 cut(s)	18, 114
MnlI	CCTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	20, 168
Mva1269I	GAATGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	20, 168
Sau96I	GGNCC	1 cut(s)	134
SetI	ASST	2 cut(s)	68, 98
SfcI	CTRYAG	1 cut(s)	30
SgeI	CNNG	7 cut(s)	45, 70, 86, 132, 141, 163, 187
SsiI	CCGC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	20, 168
Tru9I	TTAA	2 cut(s)	20, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.