Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42339408 .. 42341889

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATAAGGAGAAGTTTTTATCACAGGATTTTAGTGTTCAGTTGGTGTTCGGGGGCTTATTCGCTACCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATCCTTCAGTCTTACAAGAGTTGACTGCTGAGCATGAAGCTATTCTAAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACCCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATTTACAATACCAGAAGGTTGGACGATTATGGTTGTCACGTCTGCGCTTCAGTTAAATCCCAGCACATTCGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGTCATTGACTCGCACTCTATATCCAAGAATTTCATGCCTTTTGGTGGAGGAATGAGACAATGTGCCGGGGCAGAGTATAGTAGAGTTTTCTTGTCTACATTTTTCCATGTCTTGGTCACCAAATATAGGTGGACAACAATCAAAGGAGCACGGATTGCTCGAAATCCCATTTTAGGGTTTGGTGATGGCATTCACATTAAGTTCTCAGAGAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

214

Amino Acids

24.22

Weight (kDa)

9.21

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 192	5.2e-40	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	518
AclWI	GGATC	3 cut(s)	176, 386, 399
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	4 cut(s)	88, 111, 218, 350
AfiI	CCNNNNNNNGG	8 cut(s)	259, 313, 314, 467, 535, 549, 596, 597
AgsI	TTSAA	2 cut(s)	74, 406
AjiI	CACGTC	1 cut(s)	357
AluBI	AGCT	2 cut(s)	161, 293
AluI	AGCT	2 cut(s)	161, 293
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	294, 472
AlwI	GGATC	3 cut(s)	176, 386, 399
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	2 cut(s)	162, 252
AspLEI	GCGC	1 cut(s)	364
AsuC2I	CCSGG	2 cut(s)	276, 490
AsuHPI	GGTGA	2 cut(s)	532, 617
BamHI	GGATCC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	574
BccI	CCATC	1 cut(s)	602
BcnI	CCSGG	2 cut(s)	276, 490
BcoDI	GTCTC	2 cut(s)	294, 472
BlpI	GCTNAGC	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	276, 490
BmgBI	CACGTC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	276, 490
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	276, 490
Bsa29I	ATCGAT	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	410, 489
Bsc4I	CCNNNNNNNGG	8 cut(s)	259, 313, 314, 467, 535, 549, 596, 597
Bse1I	ACTGG	1 cut(s)	308
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	410, 489
BseGI	GGATG	3 cut(s)	121, 211, 303
BseLI	CCNNNNNNNGG	8 cut(s)	259, 313, 314, 467, 535, 549, 596, 597
BseMII	CTCAG	2 cut(s)	141, 642
BseNI	ACTGG	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	276, 489
BslI	CCNNNNNNNGG	8 cut(s)	259, 313, 314, 467, 535, 549, 596, 597
BsmAI	GTCTC	2 cut(s)	294, 472
BsmI	GAATGC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	181, 391
Bsp1720I	GCTNAGC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	410
BspCNI	CTCAG	2 cut(s)	142, 641
BspDI	ATCGAT	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	3 cut(s)	176, 386, 399
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	410, 489
BssMI	GATC	2 cut(s)	181, 391
BssT1I	CCWWGG	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstDEI	CTNAG	2 cut(s)	150, 628
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	3 cut(s)	121, 211, 303
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	184, 394
BstMAI	GTCTC	2 cut(s)	294, 472
BstMBI	GATC	2 cut(s)	181, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 578
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	274, 488
BstX2I	RGATCY	2 cut(s)	181, 391
BstXI	CCANNNNNNTGG	2 cut(s)	336, 417
BstYI	RGATCY	2 cut(s)	181, 391
Bsu15I	ATCGAT	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	121, 211, 303
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	218
CviAII	CATG	5 cut(s)	155, 201, 411, 457, 530
CviJI	RGCY	5 cut(s)	57, 101, 161, 279, 293
CviKI_1	RGCY	5 cut(s)	57, 101, 161, 279, 293
DdeI	CTNAG	2 cut(s)	150, 628
DpnI	GATC	2 cut(s)	183, 393
DpnII	GATC	2 cut(s)	181, 391
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	410
Eco57I	CTGAAG	4 cut(s)	88, 111, 218, 350
Eco91I	GGTNACC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	5 cut(s)	158, 204, 414, 460, 533
FatI	CATG	5 cut(s)	154, 200, 410, 456, 529
FblI	GTMKAC	1 cut(s)	518
FokI	GGATG	3 cut(s)	108, 218, 290
GlaI	GCGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	381
HapII	CCGG	2 cut(s)	276, 489
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	5 cut(s)	158, 204, 414, 460, 533
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	74, 431
HpaII	CCGG	2 cut(s)	276, 489
HphI	GGTGA	2 cut(s)	532, 617
Hpy166II	GTNNAC	4 cut(s)	110, 144, 519, 555
Hpy188I	TCNGA	1 cut(s)	631
Hpy8I	GTNNAC	4 cut(s)	110, 144, 519, 555
HpyAV	CCTTC	5 cut(s)	112, 135, 263, 326, 415
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	116, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 578
HpyF3I	CTNAG	2 cut(s)	150, 628
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	158, 204, 414, 460, 533
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	2 cut(s)	181, 391
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	7 cut(s)	11, 221, 289, 321, 342, 391, 502
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	352, 538
MalI	GATC	2 cut(s)	183, 393
MboI	GATC	2 cut(s)	181, 391
MboII	GAAGA	2 cut(s)	191, 224
MflI	RGATCY	2 cut(s)	181, 391
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	2 cut(s)	317, 398
MnlI	CCTC	2 cut(s)	382, 464
MroXI	GAANNNNTTC	2 cut(s)	162, 252
MseI	TTAA	3 cut(s)	371, 399, 621
MslI	CAYNNNNRTG	1 cut(s)	199
MspI	CCGG	2 cut(s)	276, 489
MspR9I	CCNGG	2 cut(s)	276, 490
Mva1269I	GAATGC	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	92, 578
NciI	CCSGG	2 cut(s)	276, 490
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	181, 391
NlaIII	CATG	5 cut(s)	158, 204, 414, 460, 533
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	352, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PctI	GAATGC	1 cut(s)	612
PdmI	GAANNNNTTC	2 cut(s)	162, 252
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	535
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PspEI	GGTNACC	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	181, 391
RseI	CAYNNNNRTG	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	371, 399, 621
Sau3AI	GATC	2 cut(s)	181, 391
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	276, 490
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	8 cut(s)	71, 163, 240, 295, 337, 359, 426, 554
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	274, 488
StyI	CCWWGG	1 cut(s)	410
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	218, 387, 583
TasI	AATT	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	371, 399, 621
Tru9I	TTAA	3 cut(s)	371, 399, 621
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	352, 538
Tsp45I	GTSAC	2 cut(s)	352, 538
TspDTI	ATGAA	3 cut(s)	171, 222, 445
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	535
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	2 cut(s)	162, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.