Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

26179687 .. 26181311

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1133300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTGGGATGTGGTGGGATTAAGTTTAGTAGCTTTGCTAGTAATATACTTAACTTACTGGATTAACCAATGGAGGAATCCAAAATGCAATGGGGTTCTCCCTCCGGGTTCTATGGGATTGCCTCTCATTGGAGAGACTCTTAGTTTGCTTACTCCCTGCTACTCCCTTGATCTTCATCCATTCCTTAAGAAGAGACTCCAAAGATACGGACCCATTTTTCGGACTAGTTTGGTGGGCAAGCCAGTTCTCGTATCAGCTGATCCCGAATTTAACAAATATGTAATTCAGCAAGAAGGGAGGATGGTTGAACTATGGTACTTGGACACATTTTCTAAGATTTTTGTGCTGGAAGGAGAGTCTGGGTTAAATAAAATTGGTGTGATTCACAAGTACTTAAGGAGCATTTTCCTGAATCACTTTGGCTCTGAATGCATTAAGGAAAAGTTGCTCCCTCAAATAGAAGAAACTATCAACAAACATTTATGTGCCTGGTCAAGCCAGGAATCTGTTGAAGTGAAAAATGCAATCTCAGTTATGGTTTTAAACTTTAGTGCACAACATATGATCGGTTATGATGCCAAAACAGCTCCCGAAAACCTGGGTGAGGGATATCATAGAGTCACCCAAGGTTTTATGTCCTTCCCCTTGAATGTTCCTGGCACAGCTTACCATAATTGTATAAAGCTGACAACCATGTTGAGGAATATGATAAGGGAGAGACGCAAGTCACCTGAGAAGCGCCGAGGAGATTTCCTTGACCAAGTCATCACCGACATAGATCAAGAGAAGTTCTTGTCGGAGGACTTCTGTGTACACATGATATTTGGGGGCTTATTTGCTACCTTTGATGCTATTTCAACAGTATTGACATTATTTTTCAGTTTACTTGCAGACCATCCTGTGGTTTTACAAGAGCTGACAGCTGAGCATGAGGCACTGCTCAAAAATAGAGAAAACCCAAATTCTGCACTTACATGGGATGAATATAAATCGATGACTTTTACCCTTCAAGTTATCAATGAAACTCTGAGGCTGAGTAATGCTATCCCAGGCTTGTTTCGTAGAGCATTGAAGGATATCCCGGTAAATGGTAAGTCCTCAATTAAAATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

372

Amino Acids

42.2

Weight (kDa)

7.65

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 368	9.1e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	901
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	266, 961
AfaI	GTAC	3 cut(s)	317, 392, 813
AfiI	CCNNNNNNNGG	6 cut(s)	128, 219, 604, 699, 901, 1088
AflII	CTTAAG	2 cut(s)	185, 394
AgsI	TTSAA	6 cut(s)	308, 512, 649, 858, 1010, 1072
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	5 cut(s)	488, 498, 597, 655, 1048
AluBI	AGCT	7 cut(s)	32, 257, 587, 665, 685, 916, 923
AluI	AGCT	7 cut(s)	32, 257, 587, 665, 685, 916, 923
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	128, 187, 712
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	254
ApaLI	GTGCAC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	266, 961
ArsI	GACNNNNNNTTYG	4 cut(s)	127, 159, 201, 233
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	2 cut(s)	105, 1082
AsuHPI	GGTGA	4 cut(s)	613, 614, 720, 760
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	556
BccI	CCATC	2 cut(s)	295, 903
BciT130I	CCWGG	5 cut(s)	490, 500, 599, 657, 1050
BcnI	CCSGG	2 cut(s)	105, 1082
BcoDI	GTCTC	3 cut(s)	128, 187, 712
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	38, 225
BfoI	RGCGCY	1 cut(s)	742
BfrI	CTTAAG	2 cut(s)	185, 394
BlpI	GCTNAGC	1 cut(s)	924
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	7 cut(s)	105, 490, 500, 599, 657, 1050, 1082
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	7 cut(s)	105, 490, 500, 599, 657, 1050, 1082
BmsI	GCATC	2 cut(s)	565, 838
BoxI	GACNNNNGTC	1 cut(s)	724
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuMI	CCSGG	2 cut(s)	105, 1082
Bsa29I	ATCGAT	1 cut(s)	992
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	598, 625, 742, 1048
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 219, 604, 699, 901, 1088
Bse1I	ACTGG	2 cut(s)	62, 242
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	5 cut(s)	490, 500, 599, 657, 1050
BseCI	ATCGAT	1 cut(s)	992
BseDI	CCNNGG	4 cut(s)	598, 625, 742, 1048
BseGI	GGATG	5 cut(s)	13, 175, 306, 895, 985
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	6 cut(s)	128, 219, 604, 699, 901, 1088
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	5 cut(s)	543, 723, 915, 1019, 1025
BseNI	ACTGG	2 cut(s)	62, 242
BseRI	GAGGAG	1 cut(s)	759
BseSI	GKGCMC	1 cut(s)	556
BsgI	GTGCAG	1 cut(s)	951
BshVI	ATCGAT	1 cut(s)	992
BsiHKAI	GWGCWC	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	104, 1082
BslI	CCNNNNNNNGG	6 cut(s)	128, 219, 604, 699, 901, 1088
BsmAI	GTCTC	3 cut(s)	128, 187, 712
BsmBI	CGTCTC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	811
Bsp143I	GATC	4 cut(s)	169, 259, 564, 778
Bsp1720I	GCTNAGC	1 cut(s)	924
BspCNI	CTCAG	5 cut(s)	542, 724, 916, 1020, 1026
BspDI	ATCGAT	1 cut(s)	992
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	2 cut(s)	185, 394
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	62, 242
BssECI	CCNNGG	4 cut(s)	598, 625, 742, 1048
BssMI	GATC	4 cut(s)	169, 259, 564, 778
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	5 cut(s)	490, 500, 599, 657, 1050
Bst4CI	ACNGT	1 cut(s)	862
Bst6I	CTCTTC	1 cut(s)	185
BstAFI	CTTAAG	2 cut(s)	185, 394
BstAUI	TGTACA	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	7 cut(s)	140, 333, 529, 732, 924, 1028, 1034
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	5 cut(s)	13, 175, 306, 895, 985
BstH2I	RGCGCY	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	4 cut(s)	172, 262, 567, 781
BstMAI	GTCTC	3 cut(s)	128, 187, 712
BstMBI	GATC	4 cut(s)	169, 259, 564, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	429, 584
BstNI	CCWGG	5 cut(s)	490, 500, 599, 657, 1050
BstPAI	GACNNNNGTC	1 cut(s)	724
BstSCI	CCNGG	7 cut(s)	103, 488, 498, 597, 655, 1048, 1080
BstSLI	GKGCMC	1 cut(s)	556
Bsu15I	ATCGAT	1 cut(s)	992
BsuTUI	ATCGAT	1 cut(s)	992
BtsCI	GGATG	5 cut(s)	13, 175, 306, 895, 985
BtsI	GCAGTG	1 cut(s)	935
BtsIMutI	CAGTG	1 cut(s)	935
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	992
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	3 cut(s)	316, 391, 812
CviAII	CATG	4 cut(s)	694, 817, 929, 975
CviQI	GTAC	3 cut(s)	316, 391, 812
DdeI	CTNAG	7 cut(s)	140, 333, 529, 732, 924, 1028, 1034
DpnI	GATC	4 cut(s)	171, 261, 566, 780
DpnII	GATC	4 cut(s)	169, 259, 564, 778
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	625
Eco32I	GATATC	2 cut(s)	611, 1078
Eco47I	GGWCC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoRII	CCWGG	5 cut(s)	488, 498, 597, 655, 1048
EcoRV	GATATC	2 cut(s)	611, 1078
EcoT14I	CCWWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	625
Esp3I	CGTCTC	1 cut(s)	712
FaeI	CATG	4 cut(s)	697, 820, 932, 978
FatI	CATG	4 cut(s)	693, 816, 928, 974
FauNDI	CATATG	1 cut(s)	561
FokI	GGATG	5 cut(s)	20, 162, 313, 882, 992
FspBI	CTAG	2 cut(s)	38, 225
GlaI	GCGC	1 cut(s)	740
HaeII	RGCGCY	1 cut(s)	742
HapII	CCGG	2 cut(s)	104, 1082
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	697, 820, 932, 978
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HinfI	GANTC	8 cut(s)	76, 136, 195, 356, 382, 412, 503, 618
HpaII	CCGG	2 cut(s)	104, 1082
HphI	GGTGA	4 cut(s)	613, 614, 720, 760
Hpy166II	GTNNAC	4 cut(s)	554, 812, 814, 884
Hpy188I	TCNGA	4 cut(s)	222, 427, 799, 1029
Hpy188III	TCNNGA	4 cut(s)	263, 409, 590, 782
Hpy8I	GTNNAC	4 cut(s)	554, 812, 814, 884
HpyAV	CCTTC	5 cut(s)	287, 344, 649, 1016, 1066
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4V	TGCA	6 cut(s)	87, 432, 524, 554, 890, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	429, 584
HpyF3I	CTNAG	7 cut(s)	140, 333, 529, 732, 924, 1028, 1034
Hsp92II	CATG	4 cut(s)	697, 820, 932, 978
HspAI	GCGC	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	169, 259, 564, 778
LmnI	GCTCC	3 cut(s)	399, 453, 592
LweI	GCATC	2 cut(s)	565, 838
MaeI	CTAG	2 cut(s)	38, 225
MaeIII	GTNAC	2 cut(s)	619, 726
MalI	GATC	4 cut(s)	171, 261, 566, 780
MboI	GATC	4 cut(s)	169, 259, 564, 778
MboII	GAAGA	3 cut(s)	164, 202, 473
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	7 cut(s)	266, 282, 372, 673, 961, 1101, 1107
MlyI	GAGTC	4 cut(s)	130, 189, 365, 627
MmeI	TCCRAC	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	483, 973
MspA1I	CMGCKG	2 cut(s)	257, 923
MspCI	CTTAAG	2 cut(s)	185, 394
MspI	CCGG	2 cut(s)	104, 1082
MspR9I	CCNGG	7 cut(s)	105, 490, 500, 599, 657, 1050, 1082
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	5 cut(s)	490, 500, 599, 657, 1050
MwoI	GCNNNNNNNGC	2 cut(s)	429, 584
NciI	CCSGG	2 cut(s)	105, 1082
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	4 cut(s)	169, 259, 564, 778
NlaIII	CATG	4 cut(s)	697, 820, 932, 978
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	767
NmuCI	GTSAC	2 cut(s)	619, 726
NsiI	ATGCAT	1 cut(s)	434
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	76, 382, 412, 503
PflFI	GACNNNGTC	1 cut(s)	761
PflMI	CCANNNNNTGG	1 cut(s)	901
PleI	GAGTC	4 cut(s)	130, 189, 364, 626
PpsI	GAGTC	4 cut(s)	130, 189, 364, 626
PshAI	GACNNNNGTC	1 cut(s)	724
Psp6I	CCWGG	5 cut(s)	488, 498, 597, 655, 1048
PspGI	CCWGG	5 cut(s)	488, 498, 597, 655, 1048
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	761
PvuII	CAGCTG	2 cut(s)	257, 923
RsaI	GTAC	3 cut(s)	317, 392, 813
RsaNI	GTAC	3 cut(s)	316, 391, 812
RseI	CAYNNNNRTG	2 cut(s)	483, 973
Sau3AI	GATC	4 cut(s)	169, 259, 564, 778
Sau96I	GGNCC	1 cut(s)	209
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	4 cut(s)	130, 189, 365, 627
ScrFI	CCNGG	7 cut(s)	105, 490, 500, 599, 657, 1050, 1082
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	565, 838
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	483, 973
SmlI	CTYRAG	2 cut(s)	185, 394
SmoI	CTYRAG	2 cut(s)	185, 394
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	7 cut(s)	266, 282, 372, 673, 961, 1101, 1107
SspMI	CTAG	2 cut(s)	38, 225
StyD4I	CCNGG	7 cut(s)	103, 488, 498, 597, 655, 1048, 1080
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	1 cut(s)	862
TaqI	TCGA	1 cut(s)	992
TasI	AATT	7 cut(s)	266, 282, 372, 673, 961, 1101, 1107
TatI	WGTACW	2 cut(s)	390, 811
TfiI	GAWTC	4 cut(s)	76, 382, 412, 503
TscAI	CASTG	1 cut(s)	942
TseFI	GTSAC	2 cut(s)	619, 726
Tsp45I	GTSAC	2 cut(s)	619, 726
TspDTI	ATGAA	3 cut(s)	164, 996, 1035
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	942
Tth111I	GACNNNGTC	1 cut(s)	761
Van91I	CCANNNNNTGG	1 cut(s)	901
Vha464I	CTTAAG	2 cut(s)	185, 394
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	602
XapI	RAATTY	2 cut(s)	266, 961
XspI	CTAG	2 cut(s)	38, 225
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.