Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

43258075 .. 43259424

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTTGTCCCCTCTGCTCTTTACTTGAGTCCCGAGTCATTCAAGGATCCTCTCGAGTTCAATCCATGGCGTTGGGAGGACCTTGATTCACTTGCTACATCAAAGATCTTCATGCCTTTTGGTGGAGGAATGAGGCAATGTGCTGGAGCACAGTATAGTAGAGTGTTCTTGGCCGCTTTTCTTCATGTATTTGTCACCAAGTTTAGCTCCACAACAATCAAAGGAGCACGTGTTGCTCGAAATCCTATTTTAGCATTTGGCGATGGCCCTCCAAATCGCTCTGTGCCGCCGACAAGAAATTCGTTGTCAAATGGTGAGGCTTGGAGCAAGTATCGAAGCTATTTCGTCCTCCATCATTCTTCATTATTAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

9.72

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 78	3.1e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 287
AclWI	GGATC	2 cut(s)	41, 54
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	298
AcvI	CACGTG	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	43, 61
AluBI	AGCT	2 cut(s)	207, 339
AluI	AGCT	2 cut(s)	207, 339
Alw21I	GWGCWC	2 cut(s)	151, 229
AlwI	GGATC	2 cut(s)	41, 54
Ama87I	CYCGRG	2 cut(s)	32, 53
AoxI	GGCC	2 cut(s)	171, 265
ApoI	RAATTY	1 cut(s)	298
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AseI	ATTAAT	2 cut(s)	368, 372
AspS9I	GGNCC	2 cut(s)	79, 266
AsuHPI	GGTGA	2 cut(s)	187, 326
AvaI	CYCGRG	2 cut(s)	32, 53
AvaII	GGWCC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	151, 229
BccI	CCATC	2 cut(s)	257, 360
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	2 cut(s)	174, 287
BlsI	GCNGC	2 cut(s)	175, 288
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	2 cut(s)	32, 53
BmgT120I	GGNCC	2 cut(s)	79, 266
BmiI	GGNNCC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	173, 267
BsiHKAI	GWGCWC	2 cut(s)	151, 229
BsiHKCI	CYCGRG	2 cut(s)	32, 53
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	173, 267
BsoBI	CYCGRG	2 cut(s)	32, 53
Bsp1286I	GDGCHC	2 cut(s)	151, 229
Bsp143I	GATC	2 cut(s)	46, 105
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	2 cut(s)	174, 287
BspANI	GGCC	2 cut(s)	173, 267
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	41, 54
BsrDI	GCAATG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	46, 105
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	65
BstKTI	GATC	2 cut(s)	49, 108
BstMBI	GATC	2 cut(s)	46, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	46, 105
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	2 cut(s)	46, 105
BsuRI	GGCC	2 cut(s)	173, 267
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	79, 266
CviAII	CATG	3 cut(s)	66, 112, 185
CviJI	RGCY	5 cut(s)	173, 207, 267, 320, 339
CviKI_1	RGCY	5 cut(s)	173, 207, 267, 320, 339
DpnI	GATC	2 cut(s)	48, 107
DpnII	GATC	2 cut(s)	46, 105
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	230
Eco88I	CYCGRG	2 cut(s)	32, 53
EcoO109I	RGGNCCY	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	69, 115, 188
FaiI	YATR	4 cut(s)	67, 113, 156, 186
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	3 cut(s)	65, 111, 184
Fnu4HI	GCNGC	2 cut(s)	174, 287
Fsp4HI	GCNGC	2 cut(s)	174, 287
GluI	GCNGC	2 cut(s)	174, 287
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	173, 267
Hin1II	CATG	3 cut(s)	69, 115, 188
HinfI	GANTC	3 cut(s)	28, 35, 86
HphI	GGTGA	2 cut(s)	187, 326
Hpy188III	TCNNGA	2 cut(s)	32, 53
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	69, 115, 188
Kzo9I	GATC	2 cut(s)	46, 105
LmnI	GCTCC	4 cut(s)	146, 212, 224, 324
LpnPI	CCDG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	48, 107
MboI	GATC	2 cut(s)	46, 105
MboII	GAAGA	3 cut(s)	100, 173, 351
MflI	RGATCY	2 cut(s)	46, 105
MhlI	GDGCHC	2 cut(s)	151, 229
MluCI	AATT	3 cut(s)	298, 369, 373
MlyI	GAGTC	2 cut(s)	37, 44
MnlI	CCTC	8 cut(s)	22, 60, 70, 119, 126, 279, 310, 359
MseI	TTAA	3 cut(s)	368, 372, 376
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	46, 105
NlaIII	CATG	3 cut(s)	69, 115, 188
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	193
PacI	TTAATTAA	2 cut(s)	372, 376
PaeR7I	CTCGAG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	175, 288
PleI	GAGTC	2 cut(s)	36, 43
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	36, 43
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	79
PshBI	ATTAAT	2 cut(s)	368, 372
Psp5II	RGGWCCY	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	79, 266
PspPPI	RGGWCCY	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	46, 105
SaqAI	TTAA	3 cut(s)	368, 372, 376
SatI	GCNGC	2 cut(s)	174, 287
Sau3AI	GATC	2 cut(s)	46, 105
Sau96I	GGNCC	2 cut(s)	79, 266
SchI	GAGTC	2 cut(s)	37, 44
SduI	GDGCHC	2 cut(s)	151, 229
SetI	ASST	4 cut(s)	84, 209, 232, 341
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	25, 53
SmoI	CTYRAG	2 cut(s)	25, 53
Sse9I	AATT	3 cut(s)	298, 369, 373
SsiI	CCGC	2 cut(s)	174, 287
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	54, 238, 334
TasI	AATT	3 cut(s)	298, 369, 373
TauI	GCSGC	2 cut(s)	176, 289
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	3 cut(s)	368, 372, 376
Tru9I	TTAA	3 cut(s)	368, 372, 376
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	100, 173, 351
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	2 cut(s)	368, 372
XapI	RAATTY	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.