Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

36307728 .. 36309369

Gene Structure 1642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTGGACTAAGGTGGGATTGTGTTTAGTAGCATTTCTGGTGATATACATCACCCATTGGATTATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACCCTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCGAACAAGTTTGGCAGGTAGGCCAGTTGTGATATCAGCTGATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTGAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGATGGAAGGTGAATCAAAAGTAAACGCAGTTGGCATTGTTCACAAATACGTAAGGAGCACTTTATTGAATCACTTTGGTGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAAAGTTTATGTTCTTGGTCAAGTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTTAATTTTAGTGCAAAGCAGATGATTAGTTATAATGCTGAAAAAGCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAGAGACCATGTTGAGGGATATGCTCAAGGAGAGACATGATTTGCCTAAGACCCAACATGGGGATTTCCTTGATCAAATTGCAAATGACATGGACAAGGAGAAGTTTTTATCAGAGGATTTTATCGTTCACTTGTTATTTGCGGGCTTATTTGCTACCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATTCTTCAGTCTTACAAGAGTTGACTGCTGAGCATGAAGCTATTCTCAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACTCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTACGTAGAGCTTTGAGAGACATCCCAGTAAAGGGTCGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

370

Amino Acids

42.12

Weight (kDa)

6.84

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 368	4.1e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	224
AciI	CCGC	1 cut(s)	839
AclWI	GGATC	2 cut(s)	254, 962
AcsI	RAATTY	2 cut(s)	266, 464
AcuI	CTGAAG	3 cut(s)	874, 897, 1004
AfaI	GTAC	2 cut(s)	317, 679
AfiI	CCNNNNNNNGG	7 cut(s)	128, 694, 711, 756, 757, 1099, 1100
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	8 cut(s)	111, 200, 271, 333, 412, 512, 649, 860
AjnI	CCWGG	2 cut(s)	103, 655
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	5 cut(s)	159, 257, 587, 947, 1079
AluI	AGCT	5 cut(s)	159, 257, 587, 947, 1079
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	4 cut(s)	128, 695, 724, 1080
AlwI	GGATC	2 cut(s)	254, 962
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	266, 464
ArsI	GACNNNNNNTTYG	4 cut(s)	127, 159, 201, 233
Asp700I	GAANNNNTTC	2 cut(s)	948, 1038
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	5 cut(s)	43, 52, 143, 167, 365
AsuII	TTCGAA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	404
BccI	CCATC	2 cut(s)	340, 620
BciT130I	CCWGG	2 cut(s)	105, 657
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	2 cut(s)	147, 769
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	4 cut(s)	128, 695, 724, 1080
BfaI	CTAG	1 cut(s)	167
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	2 cut(s)	169, 336
BlpI	GCTNAGC	1 cut(s)	936
Bme1390I	CCNGG	3 cut(s)	105, 657, 1062
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	3 cut(s)	105, 657, 1062
BmrI	ACTGGG	1 cut(s)	1088
BmuI	ACTGGG	1 cut(s)	1088
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	936
Bpu14I	TTCGAA	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	1062
Bsa29I	ATCGAT	1 cut(s)	1004
BsaAI	YACGTR	2 cut(s)	394, 1073
BsaBI	GATNNNNATC	1 cut(s)	47
BsaI	GGTCTC	2 cut(s)	128, 695
BsaJI	CCNNGG	2 cut(s)	655, 656
Bsc4I	CCNNNNNNNGG	7 cut(s)	128, 694, 711, 756, 757, 1099, 1100
Bse1I	ACTGG	2 cut(s)	242, 1094
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	105, 657
BseCI	ATCGAT	1 cut(s)	1004
BseDI	CCNNGG	2 cut(s)	655, 656
BseGI	GGATG	2 cut(s)	997, 1089
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	7 cut(s)	128, 694, 711, 756, 757, 1099, 1100
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	5 cut(s)	154, 417, 543, 590, 927
BseNI	ACTGG	2 cut(s)	242, 1094
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	1004
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	1062
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	7 cut(s)	128, 694, 711, 756, 757, 1099, 1100
BsmAI	GTCTC	4 cut(s)	128, 695, 724, 1080
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	2 cut(s)	128, 695
Bsp119I	TTCGAA	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
Bsp1720I	GCTNAGC	1 cut(s)	936
BspACI	CCGC	1 cut(s)	839
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	5 cut(s)	153, 418, 542, 591, 928
BspDI	ATCGAT	1 cut(s)	1004
BspLI	GGNNCC	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	254, 962
BspT104I	TTCGAA	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	128, 695
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	242, 1094
BssECI	CCNNGG	2 cut(s)	655, 656
BssMI	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
Bst2UI	CCWGG	2 cut(s)	105, 657
Bst6I	CTCTTC	2 cut(s)	1023, 1044
BstAFI	CTTAAG	1 cut(s)	434
BstBAI	YACGTR	2 cut(s)	394, 1073
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	526, 841
BstDEI	CTNAG	7 cut(s)	9, 140, 426, 529, 599, 744, 936
BstF5I	GGATG	2 cut(s)	997, 1089
BstKTI	GATC	6 cut(s)	150, 172, 262, 339, 772, 970
BstMAI	GTCTC	4 cut(s)	128, 695, 724, 1080
BstMBI	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 878
BstNI	CCWGG	2 cut(s)	105, 657
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	3 cut(s)	103, 655, 1060
BstSNI	TACGTA	2 cut(s)	394, 1073
BstX2I	RGATCY	3 cut(s)	169, 336, 967
BstYI	RGATCY	3 cut(s)	169, 336, 967
Bsu15I	ATCGAT	1 cut(s)	1004
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	1004
BtsCI	GGATG	2 cut(s)	997, 1089
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	526, 841
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	1004
Csp6I	GTAC	2 cut(s)	316, 678
CviAII	CATG	7 cut(s)	521, 706, 734, 755, 787, 941, 987
CviQI	GTAC	2 cut(s)	316, 678
DdeI	CTNAG	7 cut(s)	9, 140, 426, 529, 599, 744, 936
DpnI	GATC	6 cut(s)	149, 171, 261, 338, 771, 969
DpnII	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
Eam1104I	CTCTTC	2 cut(s)	1023, 1044
EarI	CTCTTC	2 cut(s)	1023, 1044
Eco105I	TACGTA	2 cut(s)	394, 1073
Eco31I	GGTCTC	2 cut(s)	128, 695
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	3 cut(s)	874, 897, 1004
EcoRI	GAATTC	2 cut(s)	266, 464
EcoRII	CCWGG	2 cut(s)	103, 655
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	7 cut(s)	524, 709, 737, 758, 790, 944, 990
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	7 cut(s)	520, 705, 733, 754, 786, 940, 986
FauI	CCCGC	1 cut(s)	832
FbaI	TGATCA	2 cut(s)	147, 769
FokI	GGATG	2 cut(s)	1004, 1076
FspBI	CTAG	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	1062
Hin1II	CATG	7 cut(s)	524, 709, 737, 758, 790, 944, 990
HincII	GTYRAC	2 cut(s)	472, 930
HindII	GTYRAC	2 cut(s)	472, 930
HinfI	GANTC	4 cut(s)	356, 412, 503, 860
HpaII	CCGG	1 cut(s)	1062
HphI	GGTGA	5 cut(s)	43, 52, 143, 167, 365
Hpy166II	GTNNAC	7 cut(s)	6, 367, 385, 472, 826, 896, 930
Hpy188I	TCNGA	1 cut(s)	811
Hpy188III	TCNNGA	3 cut(s)	263, 343, 500
Hpy8I	GTNNAC	7 cut(s)	6, 367, 385, 472, 826, 896, 930
HpyAV	CCTTC	4 cut(s)	287, 344, 688, 898
HpyCH4IV	ACGT	2 cut(s)	393, 1072
HpyCH4V	TGCA	6 cut(s)	87, 554, 665, 779, 902, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 878
HpyF3I	CTNAG	7 cut(s)	9, 140, 426, 529, 599, 744, 936
HpySE526I	ACGT	2 cut(s)	393, 1072
Hsp92II	CATG	7 cut(s)	524, 709, 737, 758, 790, 944, 990
Ksp22I	TGATCA	2 cut(s)	147, 769
Kzo9I	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
LmnI	GCTCC	2 cut(s)	399, 453
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	393, 1072
MaeIII	GTNAC	1 cut(s)	1068
MalI	GATC	6 cut(s)	149, 171, 261, 338, 771, 969
MboI	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
MboII	GAAGA	7 cut(s)	89, 164, 331, 903, 977, 1010, 1031
MflI	RGATCY	3 cut(s)	169, 336, 967
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	266, 464, 544, 673, 774
MnlI	CCTC	8 cut(s)	66, 111, 132, 149, 291, 423, 705, 805
MroXI	GAANNNNTTC	2 cut(s)	948, 1038
MseI	TTAA	2 cut(s)	435, 543
MslI	CAYNNNNRTG	2 cut(s)	420, 985
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	1062
MspR9I	CCNGG	3 cut(s)	105, 657, 1062
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	105, 657
MwoI	GCNNNNNNNGC	2 cut(s)	584, 878
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
NlaIII	CATG	7 cut(s)	524, 709, 737, 758, 790, 944, 990
NlaIV	GGNNCC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	524
NspV	TTCGAA	1 cut(s)	220
OliI	CACNNNNGTG	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	656
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	2 cut(s)	948, 1038
PfeI	GAWTC	4 cut(s)	356, 412, 503, 860
Ppu21I	YACGTR	2 cut(s)	394, 1073
PsiI	TTATAA	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	103, 655
PspGI	CCWGG	2 cut(s)	103, 655
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	169, 336, 967
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	317, 679
RsaNI	GTAC	2 cut(s)	316, 678
RseI	CAYNNNNRTG	2 cut(s)	420, 985
SaqAI	TTAA	2 cut(s)	435, 543
Sau3AI	GATC	6 cut(s)	147, 169, 259, 336, 769, 967
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	105, 657, 1062
SduI	GDGCHC	1 cut(s)	404
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	420, 985
SmlI	CTYRAG	2 cut(s)	434, 722
SmoI	CTYRAG	2 cut(s)	434, 722
SnaBI	TACGTA	2 cut(s)	394, 1073
Sse9I	AATT	5 cut(s)	266, 464, 544, 673, 774
SsiI	CCGC	1 cut(s)	839
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	103, 655, 1060
TaiI	ACGT	2 cut(s)	396, 1075
TaqI	TCGA	2 cut(s)	220, 1004
TasI	AATT	5 cut(s)	266, 464, 544, 673, 774
TfiI	GAWTC	4 cut(s)	356, 412, 503, 860
Tru1I	TTAA	2 cut(s)	435, 543
Tru9I	TTAA	2 cut(s)	435, 543
TscAI	CASTG	1 cut(s)	879
TspDTI	ATGAA	4 cut(s)	80, 172, 957, 1008
TspRI	CASTG	1 cut(s)	879
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	2 cut(s)	266, 464
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	948, 1038
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.