RLG00000013063

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
25511197 .. 25517263
6067 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013063

Sequence Viewer

Length: 1296 bp
ATGGAGGAACCCAAAATGCAATGGGGTTCTGCCTCCTGGTTCCATGGGCTTGCCTCTCATTGGAGAGACCTTAAATATGGGCCTATATTCCGAACTAGTTTGGCGGGTCGACCTGTCGTAATATCAGCTGATCCTGAGTTCAATAACTACATATTTCAGCAAGAAGGCAAGTCTGTTGAACAATGGTACATGGATGTAATATCAAAAGTCTTTGAAGGCGATACCAAGGCAAATGCAACTGGCGTCATCCACAAGTACATGAGGAGCATATTCATGAAACACTTTGGTGCTGAGAACCTCAAGGAAAAGTTGCTCCCTCAAATGGAGGAATGTGTTAACAAAACTCTACATGCATGGTCTAGTAGGGCATCTGTTGAAGTGAAGCATGTTGCTTCAGTTATGGTTTTGAATTTTATTGCAAAGCAGATGATAAGTTATGATGCTAAAAAATCAACCGAGGACCTGAGTGAGAAATTTACTGAAGTCATCGATGGTCTTATGTCCTTTCCTTTGAATATTCCTGGTACCGGATACTACAAGTGTTTGAAGGGCCAAAAGAAGGTAACAACCATGCTGAGGGATGTGTTAAAGCAGAGATGCAATTCACCCGAGACACACCGACGAGATTTCGTTGATCAATCATGCAATGACATGGAGAAAGAGAAGTTCTTGACAGAGGATTTTGGGGTCATGTTGATGTTTGGGGGCTTATTTGCTGCCTTTGAGTCCATTTCAGCTGTATTGACTTTAGCTTTTAGTTTACTGGAACAACATCCCTCAGTCTTACAAGAGTTGACTGTTGAGCATGATGCAATTCTCAAAAATAGAGAGAATCCAAATTCTCCACTCACATGGGACGAATACAAATCCATGACTTTCACTTTTCAGGTTATCAACGAAACTCTCAGGCTGGGTAATGTTGCACCTGGCTTGTTACGCAGAGCTTTGAAAGATGTCACAATAAAAGGGTATACAATTCCAAAAGATTGGACCATTATGGTTGTCCCCTCTGCTCTTTACTTGAGTCCCGAGTCATTCAAGGATCCCCTCAAGTTCAATCCATGGCGTTGGAAGGACCTTGATTCACTTGCTACATCAAAGATCTTCATGCCTTTTGGTGGAGGAATGAGGCAATGTGCTGGAGCAGAGTATAGTAAAGTGTTCTTGGCCACTTTTCTTCATGTATTTGTCACCAAGTTTAGCTCCACAACAATCAAAGGAGCACGTGTTGCTCGAAATCCTATTTTAGCATTTGGCGGTGGTATGCACATCAAGTTTTCAGAGAAGACAACTTAA

Protein Analysis

432

Amino Acids

48.99

Weight (kDa)

8.83

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 25 - 409 1.2e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccI GTMKAC 2 cut(s) 109, 971
AciI CCGC 2 cut(s) 104, 1257
AclWI GGATC 3 cut(s) 125, 1037, 1050
AcoI YGGCCR 1 cut(s) 1167
AcsI RAATTY 3 cut(s) 409, 473, 838
AcuI CTGAAG 2 cut(s) 378, 501
AcvI CACGTG 1 cut(s) 1226
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 188, 257, 526
AfiI CCNNNNNNNGG 6 cut(s) 60, 322, 527, 559, 576, 1118
AflIII ACRYGT 1 cut(s) 1225
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 3 cut(s) 35, 520, 925
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 5 cut(s) 128, 737, 752, 944, 1203
AluI AGCT 5 cut(s) 128, 737, 752, 944, 1203
Alw21I GWGCWC 1 cut(s) 1225
Alw26I GTCTC 2 cut(s) 60, 605
AlwI GGATC 3 cut(s) 125, 1037, 1050
Ama87I CYCGRG 2 cut(s) 608, 1028
AoxI GGCC 3 cut(s) 80, 550, 1167
ApeKI GCWGC 1 cut(s) 716
ApoI RAATTY 3 cut(s) 409, 473, 838
Asp718I GGTACC 1 cut(s) 524
AspS9I GGNCC 5 cut(s) 80, 460, 550, 990, 1075
AsuHPI GGTGA 2 cut(s) 597, 1183
AvaI CYCGRG 2 cut(s) 608, 1028
AvaII GGWCC 3 cut(s) 460, 990, 1075
BalI TGGCCA 1 cut(s) 1169
BamHI GGATCC 1 cut(s) 1042
BanI GGYRCC 1 cut(s) 524
BbrPI CACGTG 1 cut(s) 1226
BbsI GAAGAC 1 cut(s) 1292
Bbv12I GWGCWC 1 cut(s) 1225
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 703
BccI CCATC 1 cut(s) 485
BciT130I CCWGG 3 cut(s) 37, 522, 927
BciVI GTATCC 1 cut(s) 524
BclI TGATCA 1 cut(s) 634
BcoDI GTCTC 2 cut(s) 60, 605
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 2 cut(s) 96, 360
BfuI GTATCC 1 cut(s) 524
BglII AGATCT 1 cut(s) 1101
BisI GCNGC 1 cut(s) 717
BlsI GCNGC 1 cut(s) 718
Bme1390I CCNGG 3 cut(s) 37, 522, 927
Bme18I GGWCC 3 cut(s) 460, 990, 1075
BmeT110I CYCGRG 2 cut(s) 608, 1028
BmgT120I GGNCC 5 cut(s) 80, 460, 550, 990, 1075
BmiI GGNNCC 4 cut(s) 9, 41, 526, 1044
BmrFI CCNGG 3 cut(s) 37, 522, 927
BmsI GCATC 4 cut(s) 377, 430, 587, 799
BpiI GAAGAC 1 cut(s) 1292
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 3 cut(s) 284, 1034, 1042
Bsa29I ATCGAT 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 1226
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 43, 225, 456, 1061
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 322, 527, 559, 576, 1118
Bse1I ACTGG 2 cut(s) 244, 768
Bse3DI GCAATG 3 cut(s) 26, 652, 1139
BseBI CCWGG 3 cut(s) 37, 522, 927
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 43, 225, 456, 1061
BseGI GGATG 4 cut(s) 199, 246, 586, 772
BseLI CCNNNNNNNGG 6 cut(s) 60, 322, 527, 559, 576, 1118
BseMI GCAATG 3 cut(s) 26, 652, 1139
BseMII CTCAG 6 cut(s) 126, 282, 455, 566, 792, 919
BseNI ACTGG 2 cut(s) 244, 768
BseRI GAGGAG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 703
BseYI CCCAGC 1 cut(s) 910
BshFI GGCC 3 cut(s) 82, 552, 1169
BshNI GGYRCC 1 cut(s) 524
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 1225
BsiHKCI CYCGRG 2 cut(s) 608, 1028
BsiSI CCGG 1 cut(s) 528
BslFI GGGAC 3 cut(s) 869, 989, 1011
BslI CCNNNNNNNGG 6 cut(s) 60, 322, 527, 559, 576, 1118
BsmAI GTCTC 2 cut(s) 60, 605
BsmFI GGGAC 3 cut(s) 869, 989, 1011
BsnI GGCC 3 cut(s) 82, 552, 1169
Bso31I GGTCTC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 608, 1028
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp143I GATC 4 cut(s) 130, 634, 1042, 1101
Bsp19I CCATGG 2 cut(s) 43, 1061
BspACI CCGC 2 cut(s) 104, 1257
BspANI GGCC 3 cut(s) 82, 552, 1169
BspCNI CTCAG 6 cut(s) 127, 283, 456, 567, 791, 918
BspDI ATCGAT 1 cut(s) 489
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 9, 41, 526, 1044
BspPI GGATC 3 cut(s) 125, 1037, 1050
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 60
BsrDI GCAATG 3 cut(s) 26, 652, 1139
BsrI ACTGG 2 cut(s) 244, 768
BssECI CCNNGG 4 cut(s) 43, 225, 456, 1061
BssMI GATC 4 cut(s) 130, 634, 1042, 1101
BssNAI GTATAC 1 cut(s) 972
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 3 cut(s) 43, 225, 1061
Bst1107I GTATAC 1 cut(s) 972
Bst2UI CCWGG 3 cut(s) 37, 522, 927
Bst4CI ACNGT 1 cut(s) 799
BstACI GRCGYC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstBAI YACGTR 1 cut(s) 1226
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 6 cut(s) 135, 291, 464, 575, 778, 905
BstDSI CCRYGG 2 cut(s) 43, 1061
BstF5I GGATG 4 cut(s) 199, 246, 586, 772
BstKTI GATC 4 cut(s) 133, 637, 1045, 1104
BstMAI GTCTC 2 cut(s) 60, 605
BstMBI GATC 4 cut(s) 130, 634, 1042, 1101
BstMWI GCNNNNNNNGC 2 cut(s) 936, 1229
BstNI CCWGG 3 cut(s) 37, 522, 927
BstNSI RCATGY 2 cut(s) 353, 389
BstSCI CCNGG 3 cut(s) 35, 520, 925
BstV1I GCAGC 1 cut(s) 703
BstV2I GAAGAC 1 cut(s) 1292
BstX2I RGATCY 2 cut(s) 1042, 1101
BstXI CCANNNNNNTGG 3 cut(s) 852, 987, 1068
BstYI RGATCY 2 cut(s) 1042, 1101
BstZ17I GTATAC 1 cut(s) 972
Bsu15I ATCGAT 1 cut(s) 489
BsuI GTATCC 1 cut(s) 524
BsuRI GGCC 3 cut(s) 82, 552, 1169
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 2 cut(s) 43, 1061
BtsCI GGATG 4 cut(s) 199, 246, 586, 772
Cac8I GCNNGC 1 cut(s) 51
CciI TCATGA 1 cut(s) 273
Cfr13I GGNCC 5 cut(s) 80, 460, 550, 990, 1075
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 187, 256, 525
CviQI GTAC 3 cut(s) 187, 256, 525
DdeI CTNAG 6 cut(s) 135, 291, 464, 575, 778, 905
DpnI GATC 4 cut(s) 132, 636, 1044, 1103
DpnII GATC 4 cut(s) 130, 634, 1042, 1101
EaeI YGGCCR 1 cut(s) 1167
Eco130I CCWWGG 3 cut(s) 43, 225, 1061
Eco31I GGTCTC 1 cut(s) 60
Eco47I GGWCC 3 cut(s) 460, 990, 1075
Eco57I CTGAAG 2 cut(s) 378, 501
Eco72I CACGTG 1 cut(s) 1226
Eco88I CYCGRG 2 cut(s) 608, 1028
EcoO109I RGGNCCY 2 cut(s) 460, 1075
EcoRII CCWGG 3 cut(s) 35, 520, 925
EcoT14I CCWWGG 3 cut(s) 43, 225, 1061
EcoT22I ATGCAT 1 cut(s) 355
ErhI CCWWGG 3 cut(s) 43, 225, 1061
FaqI GGGAC 3 cut(s) 869, 989, 1011
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 2 cut(s) 109, 971
Fnu4HI GCNGC 1 cut(s) 717
FokI GGATG 4 cut(s) 206, 233, 593, 759
Fsp4HI GCNGC 1 cut(s) 717
FspBI CTAG 2 cut(s) 96, 360
GluI GCNGC 1 cut(s) 717
GsaI CCCAGC 1 cut(s) 914
GsuI CTGGAG 1 cut(s) 1161
HaeIII GGCC 3 cut(s) 82, 552, 1169
HapII CCGG 1 cut(s) 528
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 243
HincII GTYRAC 3 cut(s) 110, 337, 795
HindII GTYRAC 3 cut(s) 110, 337, 795
HinfI GANTC 5 cut(s) 725, 832, 1024, 1031, 1082
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 1 cut(s) 528
HphI GGTGA 2 cut(s) 597, 1183
Hpy166II GTNNAC 5 cut(s) 110, 337, 761, 795, 972
Hpy188I TCNGA 2 cut(s) 92, 1282
Hpy188III TCNNGA 4 cut(s) 134, 274, 670, 1028
Hpy8I GTNNAC 5 cut(s) 110, 337, 761, 795, 972
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 5 cut(s) 158, 209, 541, 553, 1066
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4IV ACGT 1 cut(s) 1225
HpyCH4V TGCA 9 cut(s) 19, 236, 353, 419, 600, 645, 812, 923, 1267
HpyF10VI GCNNNNNNNGC 2 cut(s) 936, 1229
HpyF3I CTNAG 6 cut(s) 135, 291, 464, 575, 778, 905
HpySE526I ACGT 1 cut(s) 1225
Hsp92I GRCGYC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 130, 634, 1042, 1101
LmnI GCTCC 5 cut(s) 264, 318, 1142, 1208, 1220
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 4 cut(s) 377, 430, 587, 799
MaeI CTAG 2 cut(s) 96, 360
MaeII ACGT 1 cut(s) 1225
MaeIII GTNAC 4 cut(s) 562, 933, 955, 1189
MalI GATC 4 cut(s) 132, 636, 1044, 1103
MboI GATC 4 cut(s) 130, 634, 1042, 1101
MboII GAAGA 2 cut(s) 1096, 1169
MflI RGATCY 2 cut(s) 1042, 1101
MhlI GDGCHC 1 cut(s) 1225
MlsI TGGCCA 1 cut(s) 1169
MluCI AATT 6 cut(s) 409, 473, 601, 813, 838, 975
MluNI TGGCCA 1 cut(s) 1169
MlyI GAGTC 3 cut(s) 734, 1033, 1040
MmeI TCCRAC 1 cut(s) 1049
Mox20I TGGCCA 1 cut(s) 1169
Mph1103I ATGCAT 1 cut(s) 355
MscI TGGCCA 1 cut(s) 1169
MseI TTAA 4 cut(s) 72, 336, 587, 1294
MslI CAYNNNNRTG 4 cut(s) 272, 285, 695, 850
Msp20I TGGCCA 1 cut(s) 1169
MspA1I CMGCKG 2 cut(s) 128, 737
MspI CCGG 1 cut(s) 528
MspR9I CCNGG 3 cut(s) 37, 522, 927
MvaI CCWGG 3 cut(s) 37, 522, 927
MwoI GCNNNNNNNGC 2 cut(s) 936, 1229
NcoI CCATGG 2 cut(s) 43, 1061
NdeII GATC 4 cut(s) 130, 634, 1042, 1101
NlaIV GGNNCC 4 cut(s) 9, 41, 526, 1044
NmuCI GTSAC 2 cut(s) 955, 1189
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 2 cut(s) 353, 389
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 1231
PfeI GAWTC 2 cut(s) 832, 1082
PkrI GCNGC 1 cut(s) 718
PleI GAGTC 3 cut(s) 733, 1032, 1039
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 3 cut(s) 733, 1032, 1039
Ppu21I YACGTR 1 cut(s) 1226
PpuMI RGGWCCY 2 cut(s) 460, 1075
Psp5II RGGWCCY 2 cut(s) 460, 1075
Psp6I CCWGG 3 cut(s) 35, 520, 925
PspCI CACGTG 1 cut(s) 1226
PspFI CCCAGC 1 cut(s) 910
PspGI CCWGG 3 cut(s) 35, 520, 925
PspN4I GGNNCC 4 cut(s) 9, 41, 526, 1044
PspPI GGNCC 5 cut(s) 80, 460, 550, 990, 1075
PspPPI RGGWCCY 2 cut(s) 460, 1075
PsuI RGATCY 2 cut(s) 1042, 1101
PvuII CAGCTG 2 cut(s) 128, 737
RsaI GTAC 3 cut(s) 188, 257, 526
RsaNI GTAC 3 cut(s) 187, 256, 525
RseI CAYNNNNRTG 4 cut(s) 272, 285, 695, 850
SalI GTCGAC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 72, 336, 587, 1294
SatI GCNGC 1 cut(s) 717
Sau3AI GATC 4 cut(s) 130, 634, 1042, 1101
Sau96I GGNCC 5 cut(s) 80, 460, 550, 990, 1075
SchI GAGTC 3 cut(s) 734, 1033, 1040
ScrFI CCNGG 3 cut(s) 37, 522, 927
SduI GDGCHC 1 cut(s) 1225
SfaNI GCATC 4 cut(s) 377, 430, 587, 799
SinI GGWCC 3 cut(s) 460, 990, 1075
SmiMI CAYNNNNRTG 4 cut(s) 272, 285, 695, 850
SmlI CTYRAG 3 cut(s) 299, 1021, 1049
SmoI CTYRAG 3 cut(s) 299, 1021, 1049
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 6 cut(s) 409, 473, 601, 813, 838, 975
SsiI CCGC 2 cut(s) 104, 1257
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 96, 360
StyD4I CCNGG 3 cut(s) 35, 520, 925
StyI CCWWGG 3 cut(s) 43, 225, 1061
TaaI ACNGT 1 cut(s) 799
TaiI ACGT 1 cut(s) 1228
TaqI TCGA 3 cut(s) 109, 489, 1234
TasI AATT 6 cut(s) 409, 473, 601, 813, 838, 975
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 2 cut(s) 832, 1082
Tru1I TTAA 4 cut(s) 72, 336, 587, 1294
Tru9I TTAA 4 cut(s) 72, 336, 587, 1294
TseFI GTSAC 2 cut(s) 955, 1189
TseI GCWGC 1 cut(s) 716
Tsp45I GTSAC 2 cut(s) 955, 1189
TspDTI ATGAA 4 cut(s) 262, 290, 1096, 1169
VpaK11BI GGWCC 3 cut(s) 460, 990, 1075
XapI RAATTY 3 cut(s) 409, 473, 838
XceI RCATGY 2 cut(s) 353, 389
XmiI GTMKAC 2 cut(s) 109, 971
XspI CTAG 2 cut(s) 96, 360
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.