Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

43894047 .. 43895327

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATTTTTGGACTTAAAACTAATATTATGTATTTATTCATTCAGGGCCAAAAGAAGGTAACAACCATGCTGAGGGATATGCTAAAGGAGAGATGCAATTCACCCGAGACACACCGAGGAGATTTCATTGATCAATTATGCAATGACATGGGGAAAGAGAAGTTCTTGACAGAAGATTTTGGGGTCCTGTTGATATTTGGGGGCTTATTTGCTACCTTTGAGTCCATTTCAGCTGTGTTGACTTTAGCTTTTAGTCTGCTGGAACAACATCCCTCAGTCTTACAAGAGTTGACTGCTGAGCATGATGCAATTCTAAAAAATAGAGAGAATCCGAATTCTCCACTCACATGGGACGAATATAAATCCATGACTTTCACTCTTCAGGTTATCAACGAAACACTCAGGCTGGGTAATGTTGCACCTGGCTTGTTACGCAGAGCTTTGAAAGATGTCACAATAAAAGGGTATACAATTCCAGAAGATTGGGCCATTATGGTTGTCCCCTCTGCTCTTTACTTGAGTCCCAAGTCATTCAAGGATCCCCTCGAGTTCAATCCATGGCGTTGGAAGATCTTCATGCCTTTTGGTGGAGGATTGAGGCAATGTGCTGGAGCAGAGTATAGTAGAGTGTTCTTGGCCACTTTTCTTCATGTATTTGTCACCAAGTTTAGCTCCACAACAATCAAAGGAGCACGTGTTGCTCGAAATCCTATTTTAGCATTTGGCGATGGTATGCACATCAAGTTTTCAGAGAAGACAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

254

Amino Acids

28.82

Weight (kDa)

8.69

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 231	3.8e-38	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	467
AclWI	GGATC	2 cut(s)	533, 546
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	695
AfiI	CCNNNNNNNGG	3 cut(s)	55, 72, 587
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	3 cut(s)	445, 535, 553
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	4 cut(s)	233, 248, 440, 672
AluI	AGCT	4 cut(s)	233, 248, 440, 672
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	533, 546
Ama87I	CYCGRG	2 cut(s)	104, 545
AoxI	GGCC	3 cut(s)	46, 486, 636
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	572
AspS9I	GGNCC	3 cut(s)	46, 184, 486
AsuHPI	GGTGA	2 cut(s)	93, 652
AvaI	CYCGRG	2 cut(s)	104, 545
AvaII	GGWCC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	538
BbrPI	CACGTG	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	694
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	722
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	101
BglII	AGATCT	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	104, 545
BmgT120I	GGNCC	3 cut(s)	46, 184, 486
BmiI	GGNNCC	2 cut(s)	185, 540
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	2 cut(s)	83, 295
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	115, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 72, 587
Bse3DI	GCAATG	2 cut(s)	148, 608
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	115, 557
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	3 cut(s)	55, 72, 587
BseMI	GCAATG	2 cut(s)	148, 608
BseMII	CTCAG	4 cut(s)	62, 288, 288, 415
BseRI	GAGGAG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	406
BshFI	GGCC	3 cut(s)	48, 488, 638
BsiHKAI	GWGCWC	1 cut(s)	694
BsiHKCI	CYCGRG	2 cut(s)	104, 545
BslFI	GGGAC	3 cut(s)	365, 485, 507
BslI	CCNNNNNNNGG	3 cut(s)	55, 72, 587
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	3 cut(s)	365, 485, 507
BsnI	GGCC	3 cut(s)	48, 488, 638
BsoBI	CYCGRG	2 cut(s)	104, 545
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	130, 538, 570
Bsp1720I	GCTNAGC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	557
BspANI	GGCC	3 cut(s)	48, 488, 638
BspCNI	CTCAG	4 cut(s)	63, 287, 289, 414
BspLI	GGNNCC	2 cut(s)	185, 540
BspPI	GGATC	2 cut(s)	533, 546
BsrDI	GCAATG	2 cut(s)	148, 608
BssECI	CCNNGG	2 cut(s)	115, 557
BssMI	GATC	3 cut(s)	130, 538, 570
BssNAI	GTATAC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	557
Bst1107I	GTATAC	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	695
BstDEI	CTNAG	4 cut(s)	71, 274, 297, 401
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	133, 541, 573
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	3 cut(s)	130, 538, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 698
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	538, 570
BstXI	CCANNNNNNTGG	3 cut(s)	348, 483, 564
BstYI	RGATCY	2 cut(s)	538, 570
BstZ17I	GTATAC	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	48, 488, 638
BtgI	CCRYGG	1 cut(s)	557
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	46, 184, 486
CviAII	CATG	8 cut(s)	67, 148, 302, 348, 367, 558, 577, 650
DdeI	CTNAG	4 cut(s)	71, 274, 297, 401
DpnI	GATC	3 cut(s)	132, 540, 572
DpnII	GATC	3 cut(s)	130, 538, 570
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	695
Eco88I	CYCGRG	2 cut(s)	104, 545
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	8 cut(s)	70, 151, 305, 351, 370, 561, 580, 653
FaqI	GGGAC	3 cut(s)	365, 485, 507
FatI	CATG	8 cut(s)	66, 147, 301, 347, 366, 557, 576, 649
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	467
FokI	GGATG	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	48, 488, 638
Hin1II	CATG	8 cut(s)	70, 151, 305, 351, 370, 561, 580, 653
HincII	GTYRAC	2 cut(s)	240, 291
HindII	GTYRAC	2 cut(s)	240, 291
HinfI	GANTC	3 cut(s)	221, 328, 520
HphI	GGTGA	2 cut(s)	93, 652
Hpy166II	GTNNAC	3 cut(s)	240, 291, 468
Hpy188I	TCNGA	2 cut(s)	333, 751
Hpy188III	TCNNGA	2 cut(s)	166, 476
Hpy8I	GTNNAC	3 cut(s)	240, 291, 468
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	5 cut(s)	96, 141, 308, 419, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 698
HpyF3I	CTNAG	4 cut(s)	71, 274, 297, 401
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	8 cut(s)	70, 151, 305, 351, 370, 561, 580, 653
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 538, 570
LmnI	GCTCC	3 cut(s)	611, 677, 689
LweI	GCATC	2 cut(s)	83, 295
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	4 cut(s)	58, 429, 451, 658
MalI	GATC	3 cut(s)	132, 540, 572
MboI	GATC	3 cut(s)	130, 538, 570
MboII	GAAGA	6 cut(s)	185, 371, 491, 565, 580, 638
MflI	RGATCY	2 cut(s)	538, 570
MhlI	GDGCHC	1 cut(s)	694
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	5 cut(s)	97, 134, 309, 334, 471
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	2 cut(s)	230, 529
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	7 cut(s)	66, 110, 283, 514, 554, 584, 591
Mox20I	TGGCCA	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	2 cut(s)	15, 763
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	432, 698
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	3 cut(s)	130, 538, 570
NlaIII	CATG	8 cut(s)	70, 151, 305, 351, 370, 561, 580, 653
NlaIV	GGNNCC	2 cut(s)	185, 540
NmuCI	GTSAC	2 cut(s)	451, 658
PaeR7I	CTCGAG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	229, 528
PmaCI	CACGTG	1 cut(s)	695
PmlI	CACGTG	1 cut(s)	695
PpsI	GAGTC	2 cut(s)	229, 528
Ppu21I	YACGTR	1 cut(s)	695
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	421
PspCI	CACGTG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	185, 540
PspPI	GGNCC	3 cut(s)	46, 184, 486
PspPPI	RGGWCCY	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	538, 570
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	15, 763
Sau3AI	GATC	3 cut(s)	130, 538, 570
Sau96I	GGNCC	3 cut(s)	46, 184, 486
SchI	GAGTC	2 cut(s)	230, 529
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	694
SetI	ASST	9 cut(s)	60, 218, 235, 250, 387, 424, 442, 674, 697
SfaNI	GCATC	2 cut(s)	83, 295
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	517, 545
SmoI	CTYRAG	2 cut(s)	517, 545
Sse9I	AATT	5 cut(s)	97, 134, 309, 334, 471
SspI	AATATT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	557
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	546, 703
TasI	AATT	5 cut(s)	97, 134, 309, 334, 471
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	15, 763
Tru9I	TTAA	2 cut(s)	15, 763
TseFI	GTSAC	2 cut(s)	451, 658
Tsp45I	GTSAC	2 cut(s)	451, 658
TspDTI	ATGAA	4 cut(s)	28, 115, 565, 638
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.