Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

43906540 .. 43907550

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGGAATGTTGTGGGATTGAGTTTAGTAGCTCTGCTACTGATATATATCACTCACTGGATAGCCAAATGGAGGAACCCAAAATGCAATGGGGTTCTGCCTCCTGGTTCCATGGGCTTGCCTCTCATTGGAGAGACCTTAAGTTTGATCATTCCAAGCTACTCCCTAGATGTTCATCCATTCATTAAGAAGAGACTTCAAAAATATGGGCCTATATTCCGGACTAGTTTGGCGGGTAGACTTGTCGTAATATCAGCTGATCCTGAGTTCAATAACTACATATTTCAGCAAGAAGGCAAGTTTGTTGAACTATGGTACATGGATGCAATATCAAAAGTCTTTGTAGGCGATACCAAGGCAAATGCAACTGGCATCATCCACAAGTACATAAGGAGCACATTCATGAAACACTTCGGTGCTGAGAACCTCAAGGAAAAGTTGCTCCCTGAAATGGAGGATTGCGTCAACAAAACTCTTCATTCGTGGTCTAGTAGGGCATCTGTTGAAGTGAAGCATGCTGCCTCAGTTATGGTTTTGAATTTTAGTGCAAAGCAGATGATCAGTTATGATGCTGAAAAATCAACTGAGAACCTGAGTGAGAAATTTGCTGAAGTCATTGAAGGTCTTATGTCCTTTCCTTTGAATATACCTGGTACTGGATACTACAAGTGTTTGAAGGTAATATTTAACATCAATAATTATAGAAGCTGCAGAACTTTCTCCTTTCAATTATTGAGATCAAATAGATTTAGAATAGAGGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

255

Amino Acids

29.13

Weight (kDa)

9.34

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 211	1e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	538, 602
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	3 cut(s)	317, 386, 655
AfiI	CCNNNNNNNGG	4 cut(s)	72, 128, 451, 656
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	9 cut(s)	200, 271, 308, 506, 538, 620, 643, 676, 728
AhlI	ACTAGT	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	103, 649
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	32, 159, 257, 708
AluI	AGCT	4 cut(s)	32, 159, 257, 708
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	128, 187
AlwI	GGATC	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	518, 708
ApoI	RAATTY	2 cut(s)	538, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	2 cut(s)	505, 695
BciT130I	CCWGG	2 cut(s)	105, 651
BciVI	GTATCC	1 cut(s)	653
BclI	TGATCA	2 cut(s)	147, 558
BcoDI	GTCTC	2 cut(s)	128, 187
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	167, 225, 489
BfmI	CTRYAG	1 cut(s)	709
BfrI	CTTAAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	653
BisI	GCNGC	2 cut(s)	519, 709
BlsI	GCNGC	2 cut(s)	520, 710
Bme1390I	CCNGG	2 cut(s)	105, 651
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	77, 109
BmrFI	CCNGG	2 cut(s)	105, 651
BmsI	GCATC	4 cut(s)	313, 381, 506, 559
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	2 cut(s)	47, 174
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	111, 354
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 128, 451, 656
Bse1I	ACTGG	3 cut(s)	62, 373, 661
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	2 cut(s)	47, 174
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	105, 651
BseDI	CCNNGG	2 cut(s)	111, 354
BseGI	GGATG	3 cut(s)	175, 328, 375
BseJI	GATNNNNATC	2 cut(s)	47, 174
BseLI	CCNNNNNNNGG	4 cut(s)	72, 128, 451, 656
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	5 cut(s)	255, 411, 537, 576, 584
BseNI	ACTGG	3 cut(s)	62, 373, 661
BseXI	GCAGC	2 cut(s)	505, 695
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	4 cut(s)	72, 128, 451, 656
BsmAI	GTCTC	2 cut(s)	128, 187
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	147, 259, 558, 737
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	5 cut(s)	256, 412, 536, 577, 585
BspEI	TCCGGA	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	77, 109
BspMAI	CTGCAG	1 cut(s)	713
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	62, 373, 661
BssECI	CCNNGG	2 cut(s)	111, 354
BssMI	GATC	4 cut(s)	147, 259, 558, 737
BssT1I	CCWWGG	2 cut(s)	111, 354
Bst2UI	CCWGG	2 cut(s)	105, 651
Bst6I	CTCTTC	2 cut(s)	185, 480
BstAFI	CTTAAG	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	119, 516
BstDEI	CTNAG	5 cut(s)	264, 420, 523, 585, 593
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	175, 328, 375
BstKTI	GATC	4 cut(s)	150, 262, 561, 740
BstMAI	GTCTC	2 cut(s)	128, 187
BstMBI	GATC	4 cut(s)	147, 259, 558, 737
BstNI	CCWGG	2 cut(s)	105, 651
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	103, 649
BstSFI	CTRYAG	1 cut(s)	709
BstV1I	GCAGC	2 cut(s)	505, 695
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	175, 328, 375
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	119, 516
CciI	TCATGA	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	1 cut(s)	451
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	3 cut(s)	316, 385, 654
CviAII	CATG	4 cut(s)	112, 319, 403, 515
CviJI	RGCY	7 cut(s)	32, 65, 117, 159, 211, 257, 708
CviKI_1	RGCY	7 cut(s)	32, 65, 117, 159, 211, 257, 708
CviQI	GTAC	3 cut(s)	316, 385, 654
DdeI	CTNAG	5 cut(s)	264, 420, 523, 585, 593
DpnI	GATC	4 cut(s)	149, 261, 560, 739
DpnII	GATC	4 cut(s)	147, 259, 558, 737
Eam1104I	CTCTTC	2 cut(s)	185, 480
EarI	CTCTTC	2 cut(s)	185, 480
Eco130I	CCWWGG	2 cut(s)	111, 354
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	103, 649
EcoT14I	CCWWGG	2 cut(s)	111, 354
ErhI	CCWWGG	2 cut(s)	111, 354
FaeI	CATG	4 cut(s)	115, 322, 406, 518
FatI	CATG	4 cut(s)	111, 318, 402, 514
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	147, 558
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	519, 709
FokI	GGATG	3 cut(s)	162, 335, 362
Fsp4HI	GCNGC	2 cut(s)	519, 709
FspBI	CTAG	3 cut(s)	167, 225, 489
GluI	GCNGC	2 cut(s)	519, 709
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	220
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	115, 322, 406, 518
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	239, 466
Hpy188III	TCNNGA	3 cut(s)	220, 263, 403
Hpy8I	GTNNAC	2 cut(s)	239, 466
HpyAV	CCTTC	3 cut(s)	287, 614, 670
HpyCH4V	TGCA	5 cut(s)	87, 326, 365, 548, 711
HpyF3I	CTNAG	5 cut(s)	264, 420, 523, 585, 593
Hsp92II	CATG	4 cut(s)	115, 322, 406, 518
Kpn2I	TCCGGA	1 cut(s)	219
Ksp22I	TGATCA	2 cut(s)	147, 558
Kzo9I	GATC	4 cut(s)	147, 259, 558, 737
LmnI	GCTCC	2 cut(s)	393, 447
Lsp1109I	GCAGC	2 cut(s)	505, 695
LweI	GCATC	4 cut(s)	313, 381, 506, 559
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	3 cut(s)	167, 225, 489
MalI	GATC	4 cut(s)	149, 261, 560, 739
MboI	GATC	4 cut(s)	147, 259, 558, 737
MboII	GAAGA	2 cut(s)	202, 467
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	4 cut(s)	538, 602, 697, 728
MnlI	CCTC	7 cut(s)	66, 111, 132, 437, 448, 532, 751
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	4 cut(s)	140, 186, 687, 766
MslI	CAYNNNNRTG	2 cut(s)	401, 414
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	139
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	2 cut(s)	105, 651
MvaI	CCWGG	2 cut(s)	105, 651
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	4 cut(s)	147, 259, 558, 737
NlaIII	CATG	4 cut(s)	115, 322, 406, 518
NlaIV	GGNNCC	2 cut(s)	77, 109
NspI	RCATGY	1 cut(s)	518
OliI	CACNNNNGTG	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	410
PkrI	GCNGC	2 cut(s)	520, 710
Psp6I	CCWGG	2 cut(s)	103, 649
PspGI	CCWGG	2 cut(s)	103, 649
PspN4I	GGNNCC	2 cut(s)	77, 109
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	317, 386, 655
RsaNI	GTAC	3 cut(s)	316, 385, 654
RseI	CAYNNNNRTG	2 cut(s)	401, 414
SaqAI	TTAA	4 cut(s)	140, 186, 687, 766
SatI	GCNGC	2 cut(s)	519, 709
Sau3AI	GATC	4 cut(s)	147, 259, 558, 737
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	105, 651
SduI	GDGCHC	1 cut(s)	398
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	4 cut(s)	313, 381, 506, 559
SfcI	CTRYAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	401, 414
SmlI	CTYRAG	2 cut(s)	139, 428
SmoI	CTYRAG	2 cut(s)	139, 428
SpeI	ACTAGT	1 cut(s)	224
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	4 cut(s)	538, 602, 697, 728
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	3 cut(s)	167, 225, 489
StyD4I	CCNGG	2 cut(s)	103, 649
StyI	CCWWGG	2 cut(s)	111, 354
TasI	AATT	4 cut(s)	538, 602, 697, 728
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	4 cut(s)	140, 186, 687, 766
Tru9I	TTAA	4 cut(s)	140, 186, 687, 766
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	2 cut(s)	518, 708
TspDTI	ATGAA	5 cut(s)	164, 172, 391, 419, 467
TspRI	CASTG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	538, 602
XceI	RCATGY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	3 cut(s)	167, 225, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.