Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42578867 .. 42580825

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACCAAAGCCGATGAAACCACACCATTCTCCATGAACGGCAACGGAAGCTCGTCAATGTTGAAGCCGAGCAGTGAAGGCCGCGCCGGGGCGAGTAGAGAAGAAATAAGGACTTGTGAGAGAACTGGGGGGGGGGGCGCCGCTGCTAGAGGAGGAGCCAGCCATCCGGCCTGGGCACTGCGAAGATCTGATATATATGGGCTCATATTTAGGACCAGTATAGCTGGTAGACCAGTTGTTATATCAGCCGATCCTGAAATCAACAATTACCTGATTCAGCAAGAAGGGAAGCTACTTGAGGTATGGTACTTGGACACATTTTCCGAGATTTTCAAGCAAGATGGTGATTCACGAACGAATGCAGCCAGAACGGTTCACAAGTACTTGAGACACATTTTCTTGGAGCACTTTGGTGCTGAGATCCTTAAGAAAAAGTTGCTCACCCAAATAGAAGCATTCGTCGACAAAACTTTATGTTCCTGGTCAAGTCAGAAATCTGTTGAAGTTAAATATGCTGCCTCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

175

Amino Acids

19.29

Weight (kDa)

8.89

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	229, 462
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	82, 141
AclWI	GGATC	2 cut(s)	245, 415
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	308, 383
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	64, 334, 503
AjnI	CCWGG	2 cut(s)	170, 479
AleI	CACNNNNGTG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	51, 224, 292
AluI	AGCT	3 cut(s)	51, 224, 292
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	2 cut(s)	245, 415
AoxI	GGCC	2 cut(s)	79, 168
ApeKI	GCWGC	3 cut(s)	143, 362, 515
AspLEI	GCGC	2 cut(s)	86, 140
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	356, 433
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	130, 374, 502
BccI	CCATC	2 cut(s)	171, 335
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	172, 481
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	425
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	5 cut(s)	82, 141, 144, 363, 516
BlsI	GCNGC	5 cut(s)	83, 142, 145, 364, 517
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	88, 172, 481
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	139, 157
BmrFI	CCNGG	3 cut(s)	88, 172, 481
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	317, 406
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	87, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	3 cut(s)	130, 216, 233
BseBI	CCWGG	2 cut(s)	172, 481
BseDI	CCNNGG	2 cut(s)	87, 171
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	3 cut(s)	130, 216, 233
BseRI	GAGGAG	2 cut(s)	165, 168
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	130, 374, 502
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	81, 170
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	87, 167
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	382
BsmI	GAATGC	2 cut(s)	364, 455
BsnI	GGCC	2 cut(s)	81, 170
Bsp1286I	GDGCHC	3 cut(s)	178, 204, 408
Bsp143I	GATC	3 cut(s)	185, 250, 420
BspACI	CCGC	2 cut(s)	82, 141
BspANI	GGCC	2 cut(s)	81, 170
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	139, 157
BspPI	GGATC	2 cut(s)	245, 415
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	130, 216, 233
BssECI	CCNNGG	2 cut(s)	87, 171
BssMI	GATC	3 cut(s)	185, 250, 420
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	172, 481
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	417, 520
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	86, 140
BstKTI	GATC	3 cut(s)	188, 253, 423
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	3 cut(s)	185, 250, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 78
BstNI	CCWGG	2 cut(s)	172, 481
BstSCI	CCNGG	3 cut(s)	86, 170, 479
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	130, 374, 502
BstX2I	RGATCY	2 cut(s)	185, 420
BstYI	RGATCY	2 cut(s)	185, 420
BsuRI	GGCC	2 cut(s)	81, 170
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	79, 176
BtsIMutI	CAGTG	3 cut(s)	79, 176, 528
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	2 cut(s)	86, 140
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	307, 382
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	2 cut(s)	307, 382
DdeI	CTNAG	2 cut(s)	417, 520
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	3 cut(s)	187, 252, 422
DpnII	GATC	3 cut(s)	185, 250, 420
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	170, 479
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaeI	CATG	1 cut(s)	37
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	2 cut(s)	229, 462
Fnu4HI	GCNGC	5 cut(s)	82, 141, 144, 363, 516
FokI	GGATG	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	5 cut(s)	82, 141, 144, 363, 516
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	85, 139
GluI	GCNGC	5 cut(s)	82, 141, 144, 363, 516
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	81, 170
HapII	CCGG	2 cut(s)	87, 167
HhaI	GCGC	2 cut(s)	86, 140
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	84, 138
HinP1I	GCGC	2 cut(s)	84, 138
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	2 cut(s)	274, 347
HpaII	CCGG	2 cut(s)	87, 167
HphI	GGTGA	2 cut(s)	356, 433
Hpy166II	GTNNAC	3 cut(s)	230, 376, 463
Hpy188I	TCNGA	3 cut(s)	190, 325, 492
Hpy188III	TCNNGA	2 cut(s)	254, 351
Hpy8I	GTNNAC	3 cut(s)	230, 376, 463
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	71, 278
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 78
HpyF3I	CTNAG	2 cut(s)	417, 520
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	84, 138
KasI	GGCGCC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	185, 250, 420
LmnI	GCTCC	2 cut(s)	155, 403
Lsp1109I	GCAGC	3 cut(s)	130, 374, 502
MaeI	CTAG	1 cut(s)	147
MalI	GATC	3 cut(s)	187, 252, 422
MboI	GATC	3 cut(s)	185, 250, 420
MboII	GAAGA	2 cut(s)	113, 195
MflI	RGATCY	2 cut(s)	185, 420
MhlI	GDGCHC	3 cut(s)	178, 204, 408
MluCI	AATT	1 cut(s)	265
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	143, 146, 292
MseI	TTAA	2 cut(s)	426, 507
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	87, 167
MspR9I	CCNGG	3 cut(s)	88, 172, 481
Mva1269I	GAATGC	2 cut(s)	364, 455
MvaI	CCWGG	2 cut(s)	172, 481
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	48, 78
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	3 cut(s)	185, 250, 420
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	139, 157
NmeAIII	GCCGAG	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	411
PctI	GAATGC	2 cut(s)	364, 455
PfeI	GAWTC	2 cut(s)	274, 347
PkrI	GCNGC	5 cut(s)	83, 142, 145, 364, 517
PluTI	GGCGCC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	170, 479
PspGI	CCWGG	2 cut(s)	170, 479
PspN4I	GGNNCC	2 cut(s)	139, 157
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	185, 420
RsaI	GTAC	2 cut(s)	308, 383
RsaNI	GTAC	2 cut(s)	307, 382
RseI	CAYNNNNRTG	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	426, 507
SatI	GCNGC	5 cut(s)	82, 141, 144, 363, 516
Sau3AI	GATC	3 cut(s)	185, 250, 420
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	383
ScrFI	CCNGG	3 cut(s)	88, 172, 481
SduI	GDGCHC	3 cut(s)	178, 204, 408
SetI	ASST	5 cut(s)	53, 226, 273, 294, 303
SfoI	GGCGCC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	3 cut(s)	296, 385, 425
SmoI	CTYRAG	3 cut(s)	296, 385, 425
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	82, 141
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	86, 170, 479
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	84, 143
TfiI	GAWTC	2 cut(s)	274, 347
Tru1I	TTAA	2 cut(s)	426, 507
Tru9I	TTAA	2 cut(s)	426, 507
TscAI	CASTG	3 cut(s)	79, 183, 528
TseI	GCWGC	3 cut(s)	143, 362, 515
TspDTI	ATGAA	2 cut(s)	30, 50
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	79, 183, 528
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	213
XmiI	GTMKAC	2 cut(s)	229, 462
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.