Rh3DG328800

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
36180873 .. 36183114
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG328800.1

Sequence Viewer

Length: 1368 bp
ATGAAATGGAGGAACCCAAAGTGCAATGGGGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACCCTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATAAAGAAAAGACTTGAAAGATATGGACCTATATTTCGAACAAGTTTGGCAGGTAGGCCAGTTGTGGTATCAGCTGATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTGAGTTGTGGTACTTGGATACATTTTCAAAGATCTTCGTGATGGAAGGTGAATCAAAAGTAAACGCAGCTGGCATTGTTCACAAATACGTAAGGAGCACTTTATTGAATCACTTTGGTGCTGAGAGGCTTAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCAACAAAAGTTTATGTTCTTGGTCAAGTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTTAATTTTAGTGCAAAGCAGATGATTAGTTATAATGCTGAAAAAGCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACCAAGCACCAAAAGAAGGTAGAGACCATGTTGAGGGATATGCTCAAGGAGAGACATGATTTGCCTAAGACCCAACATGGGGATTTCCTTGATCAAATTGCAAATGACATGGACAAGGAGAAGTTTTTATCAGAGGATTTTATCGTTCACTTGTTATTTGCGGGCTTATTTGCTACCTTTGAATCTATTTCAGCAGTGTTGGCATTAGCCTTCAGTTTACTTGCAGAGCATCCTTCAGTCTTACAAGAGTTGACTGCTGAGCATGAAGCTATTCTCAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACTCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTACGTAGAGCTTTGAGAGACATCCCAGTAAAGGGATATACAATCCCAGAAGGTTGGACGATTATGATTGTCACGTCTGCGCTTCAGTTAAATCCCAACACATTCGAGGATCCCCTTAAGTTCAATCCATGGCGTTGGAAGGACATTGACTCACACTCTATATCCAAGAATTTCATGCCTTTTGGTGGAGGAATGAGACAATGTGCTGGGGCAGAGTATAGTAGAGTTTTCTTGTCTACATTTTTCCATGTCTTGGTCACCAAATATAGGTGGACAACAATCAAAGGAGCACGGATTGCTCGAAATCCCATGTTAGGGTTTGGTGATGGCATTCACATTAAGTTCTCAGAAAAGAAAAAGTGA

Protein Analysis

455

Amino Acids

51.8

Weight (kDa)

8.62

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 433 1e-57 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 1258
AccI GTMKAC 1 cut(s) 1241
AciI CCGC 1 cut(s) 776
AclWI GGATC 4 cut(s) 191, 899, 1109, 1122
AcsI RAATTY 3 cut(s) 203, 401, 1174
AcuI CTGAAG 4 cut(s) 811, 834, 941, 1073
AfaI GTAC 2 cut(s) 254, 616
AflII CTTAAG 2 cut(s) 371, 1121
AgsI TTSAA 9 cut(s) 48, 137, 208, 270, 349, 449, 586, 797, 1129
AjiI CACGTC 1 cut(s) 1080
AjnI CCWGG 2 cut(s) 40, 592
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 6 cut(s) 96, 194, 311, 524, 884, 1016
AluI AGCT 6 cut(s) 96, 194, 311, 524, 884, 1016
Alw21I GWGCWC 2 cut(s) 341, 1297
Alw26I GTCTC 5 cut(s) 65, 632, 661, 1017, 1195
AlwI GGATC 4 cut(s) 191, 899, 1109, 1122
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 3 cut(s) 203, 401, 1174
ArsI GACNNNNNNTTYG 4 cut(s) 64, 96, 138, 170
Asp700I GAANNNNTTC 2 cut(s) 885, 975
AspLEI GCGC 1 cut(s) 1087
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 999
AsuHPI GGTGA 5 cut(s) 80, 104, 302, 1255, 1340
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 146
BamHI GGATCC 1 cut(s) 1114
Bbv12I GWGCWC 2 cut(s) 341, 1297
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 277, 557, 1325
BciT130I CCWGG 2 cut(s) 42, 594
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 2 cut(s) 84, 706
BcnI CCSGG 1 cut(s) 999
BcoDI GTCTC 5 cut(s) 65, 632, 661, 1017, 1195
BfaI CTAG 1 cut(s) 104
BfrI CTTAAG 2 cut(s) 371, 1121
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 2 cut(s) 106, 273
BisI GCNGC 1 cut(s) 309
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 3 cut(s) 42, 594, 999
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 1080
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 14, 1116
BmrFI CCNGG 3 cut(s) 42, 594, 999
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 1 cut(s) 853
BmuI ACTGGG 1 cut(s) 1025
BpmI CTGGAG 1 cut(s) 24
Bpu1102I GCTNAGC 1 cut(s) 873
Bpu14I TTCGAA 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 999
Bsa29I ATCGAT 1 cut(s) 941
BsaAI YACGTR 2 cut(s) 331, 1010
BsaI GGTCTC 2 cut(s) 65, 632
BsaJI CCNNGG 3 cut(s) 592, 593, 1133
Bse1I ACTGG 2 cut(s) 179, 1031
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 42, 594
BseCI ATCGAT 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 592, 593, 1133
BseGI GGATG 3 cut(s) 844, 934, 1026
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 6 cut(s) 91, 354, 480, 527, 864, 1365
BseNI ACTGG 2 cut(s) 179, 1031
BseXI GCAGC 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 1211
BshFI GGCC 1 cut(s) 178
BshVI ATCGAT 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 341, 1297
BsiSI CCGG 1 cut(s) 999
BslFI GGGAC 1 cut(s) 610
BsmAI GTCTC 5 cut(s) 65, 632, 661, 1017, 1195
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 1335
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 2 cut(s) 65, 632
Bsp119I TTCGAA 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 341, 1297
Bsp143I GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
Bsp1720I GCTNAGC 1 cut(s) 873
Bsp19I CCATGG 1 cut(s) 1133
BspACI CCGC 1 cut(s) 776
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 6 cut(s) 90, 355, 479, 528, 865, 1364
BspDI ATCGAT 1 cut(s) 941
BspLI GGNNCC 2 cut(s) 14, 1116
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 4 cut(s) 191, 899, 1109, 1122
BspT104I TTCGAA 1 cut(s) 157
BspTI CTTAAG 2 cut(s) 371, 1121
BspTNI GGTCTC 2 cut(s) 65, 632
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 2 cut(s) 179, 1031
BssECI CCNNGG 3 cut(s) 592, 593, 1133
BssMI GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
BssT1I CCWWGG 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 42, 594
Bst6I CTCTTC 2 cut(s) 960, 981
BstAFI CTTAAG 2 cut(s) 371, 1121
BstAPI GCANNNNNTGC 1 cut(s) 1301
BstBAI YACGTR 2 cut(s) 331, 1010
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 313, 463, 778
BstDEI CTNAG 7 cut(s) 77, 363, 466, 536, 681, 873, 1351
BstDSI CCRYGG 1 cut(s) 1133
BstEII GGTNACC 1 cut(s) 1261
BstF5I GGATG 3 cut(s) 844, 934, 1026
BstHHI GCGC 1 cut(s) 1087
BstKTI GATC 7 cut(s) 87, 109, 199, 276, 709, 907, 1117
BstMAI GTCTC 5 cut(s) 65, 632, 661, 1017, 1195
BstMBI GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
BstMWI GCNNNNNNNGC 3 cut(s) 521, 815, 1301
BstNI CCWGG 2 cut(s) 42, 594
BstNSI RCATGY 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 1261
BstSCI CCNGG 3 cut(s) 40, 592, 997
BstSNI TACGTA 2 cut(s) 331, 1010
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 4 cut(s) 106, 273, 904, 1114
BstXI CCANNNNNNTGG 2 cut(s) 1059, 1140
BstYI RGATCY 4 cut(s) 106, 273, 904, 1114
Bsu15I ATCGAT 1 cut(s) 941
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 941
BtgI CCRYGG 1 cut(s) 1133
BtrI CACGTC 1 cut(s) 1080
BtsCI GGATG 3 cut(s) 844, 934, 1026
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 1 cut(s) 816
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 3 cut(s) 313, 463, 778
CfoI GCGC 1 cut(s) 1087
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 941
Csp6I GTAC 2 cut(s) 253, 615
CviQI GTAC 2 cut(s) 253, 615
DdeI CTNAG 7 cut(s) 77, 363, 466, 536, 681, 873, 1351
DpnI GATC 7 cut(s) 86, 108, 198, 275, 708, 906, 1116
DpnII GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
Eam1104I CTCTTC 2 cut(s) 960, 981
EarI CTCTTC 2 cut(s) 960, 981
Eco105I TACGTA 2 cut(s) 331, 1010
Eco130I CCWWGG 1 cut(s) 1133
Eco31I GGTCTC 2 cut(s) 65, 632
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 4 cut(s) 811, 834, 941, 1073
Eco91I GGTNACC 1 cut(s) 1261
EcoO65I GGTNACC 1 cut(s) 1261
EcoRI GAATTC 2 cut(s) 203, 401
EcoRII CCWGG 2 cut(s) 40, 592
EcoT14I CCWWGG 1 cut(s) 1133
ErhI CCWWGG 1 cut(s) 1133
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 1 cut(s) 610
FauI CCCGC 1 cut(s) 769
FbaI TGATCA 2 cut(s) 84, 706
FblI GTMKAC 1 cut(s) 1241
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 3 cut(s) 831, 941, 1013
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 1086
GluI GCNGC 1 cut(s) 309
GsaI CCCAGC 1 cut(s) 1215
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 999
HhaI GCGC 1 cut(s) 1087
Hin6I GCGC 1 cut(s) 1085
HinP1I GCGC 1 cut(s) 1085
HincII GTYRAC 2 cut(s) 409, 867
HindII GTYRAC 2 cut(s) 409, 867
HinfI GANTC 5 cut(s) 293, 349, 440, 797, 1154
HpaII CCGG 1 cut(s) 999
HphI GGTGA 5 cut(s) 80, 104, 302, 1255, 1340
Hpy166II GTNNAC 8 cut(s) 304, 322, 409, 763, 833, 867, 1242, 1278
Hpy188I TCNGA 2 cut(s) 748, 1354
Hpy188III TCNNGA 3 cut(s) 200, 280, 437
Hpy8I GTNNAC 8 cut(s) 304, 322, 409, 763, 833, 867, 1242, 1278
HpyAV CCTTC 7 cut(s) 224, 281, 625, 835, 858, 1049, 1138
HpyCH4IV ACGT 3 cut(s) 330, 1009, 1079
HpyCH4V TGCA 6 cut(s) 24, 491, 602, 716, 839, 995
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 815, 1301
HpyF3I CTNAG 7 cut(s) 77, 363, 466, 536, 681, 873, 1351
HpySE526I ACGT 3 cut(s) 330, 1009, 1079
HspAI GCGC 1 cut(s) 1085
Ksp22I TGATCA 2 cut(s) 84, 706
Kzo9I GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
LmnI GCTCC 3 cut(s) 336, 390, 1292
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 853
MaeI CTAG 1 cut(s) 104
MaeII ACGT 3 cut(s) 330, 1009, 1079
MaeIII GTNAC 3 cut(s) 1005, 1075, 1261
MalI GATC 7 cut(s) 86, 108, 198, 275, 708, 906, 1116
MboI GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
MboII GAAGA 6 cut(s) 26, 101, 268, 914, 947, 968
MflI RGATCY 4 cut(s) 106, 273, 904, 1114
MhlI GDGCHC 2 cut(s) 341, 1297
MluCI AATT 6 cut(s) 203, 401, 481, 610, 711, 1174
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 2 cut(s) 1040, 1121
MroXI GAANNNNTTC 2 cut(s) 885, 975
MseI TTAA 5 cut(s) 372, 480, 1094, 1122, 1344
MslI CAYNNNNRTG 2 cut(s) 357, 922
MspA1I CMGCKG 2 cut(s) 194, 311
MspCI CTTAAG 2 cut(s) 371, 1121
MspI CCGG 1 cut(s) 999
MspR9I CCNGG 3 cut(s) 42, 594, 999
Mva1269I GAATGC 1 cut(s) 1335
MvaI CCWGG 2 cut(s) 42, 594
MwoI GCNNNNNNNGC 3 cut(s) 521, 815, 1301
NciI CCSGG 1 cut(s) 999
NcoI CCATGG 1 cut(s) 1133
NdeII GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
NlaIV GGNNCC 2 cut(s) 14, 1116
NmuCI GTSAC 2 cut(s) 1075, 1261
NspI RCATGY 1 cut(s) 461
NspV TTCGAA 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 357
PasI CCCWGGG 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 1303
PctI GAATGC 1 cut(s) 1335
PdmI GAANNNNTTC 2 cut(s) 885, 975
PfeI GAWTC 4 cut(s) 293, 349, 440, 797
PflMI CCANNNNNTGG 1 cut(s) 1258
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 1148
PpsI GAGTC 1 cut(s) 1148
Ppu21I YACGTR 2 cut(s) 331, 1010
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 40, 592
PspEI GGTNACC 1 cut(s) 1261
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 2 cut(s) 40, 592
PspN4I GGNNCC 2 cut(s) 14, 1116
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 4 cut(s) 106, 273, 904, 1114
PvuII CAGCTG 2 cut(s) 194, 311
RsaI GTAC 2 cut(s) 254, 616
RsaNI GTAC 2 cut(s) 253, 615
RseI CAYNNNNRTG 2 cut(s) 357, 922
SaqAI TTAA 5 cut(s) 372, 480, 1094, 1122, 1344
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 7 cut(s) 84, 106, 196, 273, 706, 904, 1114
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 3 cut(s) 42, 594, 999
SduI GDGCHC 2 cut(s) 341, 1297
SfaNI GCATC 1 cut(s) 853
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 357, 922
SmlI CTYRAG 3 cut(s) 371, 659, 1121
SmoI CTYRAG 3 cut(s) 371, 659, 1121
SnaBI TACGTA 2 cut(s) 331, 1010
Sse9I AATT 6 cut(s) 203, 401, 481, 610, 711, 1174
SsiI CCGC 1 cut(s) 776
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 40, 592, 997
StyI CCWWGG 1 cut(s) 1133
TaiI ACGT 3 cut(s) 333, 1012, 1082
TaqI TCGA 4 cut(s) 157, 941, 1110, 1306
TasI AATT 6 cut(s) 203, 401, 481, 610, 711, 1174
TfiI GAWTC 4 cut(s) 293, 349, 440, 797
Tru1I TTAA 5 cut(s) 372, 480, 1094, 1122, 1344
Tru9I TTAA 5 cut(s) 372, 480, 1094, 1122, 1344
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 2 cut(s) 1075, 1261
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 1075, 1261
TspDTI ATGAA 5 cut(s) 17, 109, 894, 945, 1168
TspGWI ACGGA 1 cut(s) 1312
TspRI CASTG 1 cut(s) 816
Van91I CCANNNNNTGG 1 cut(s) 1258
Vha464I CTTAAG 2 cut(s) 371, 1121
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 203, 401, 1174
XceI RCATGY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 1241
XmnI GAANNNNTTC 2 cut(s) 885, 975
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.