Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

25537287 .. 25539578

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTGGACTGAGGTGGGATTGTGTTTGGTGGCATTTCTGGTGATATACATCACCCACTGGATTATCAAATGGAGGAACCCAAAGTGCAATGGAGTTCTTCCTCCAGGTTCAATGGGTTTGCCTCTCATCGGTGAGACCCTCAGTTTGATCATTCCAAGCTACTCCCTAGATCTTCACCCTTTCATTAAGAAAAGACTTGAAAGATATGGACCTATATTTCGGACTAGTTTGGCGGGTAGGCCAGTTGTGATATCAGCTGATCCTGAATTCAATAACTTCCTTTTTCAGCAAGAAGGGAGGTCTGTTGAAATGTGGTACTTGGATACATTTTCAAAGATCTTCGTGCATGAAGGTGAATCAAAGACAAACGCAGTGGGCATCGTTCACAAGTACGTAAGGAGCATTTTCTTGAATCACTTTGGTGCTGAGAGGCTCAAGGAAAAGTTGCTCCCTGAAATACAAGAATTCGTCGGCAAAAGTCTATGTTCTTGGTCAAGTCAGGAATCTGTTGAAGTGAAACATGCTGGCTCAGTTATGGTTCTTAATTTTAGTGCAAAGCAGATGATTAGTTATGATGCTGAAAAATCTACTGATGACCTGAGTGAGAAATATACTAAAATCATAGATGGTCTTATGTCGTTTCCCTTGAATATCCCTGGGACTGCATACTATAATTGTACTAAGCACCAAAAGAAGGTAACGAGCATGTTGAGGGATATGCTCAGGGAGAGACACGATTCACCTGAGACCCAACATGGAGATTTCCTTGATCAAATTGCGAATGACATGGATAAGGAGAAGTTTTTATCAGAGGATTTTAGTGTTCAGTTGGTGTTCGGGGGCTTATTCGCTACCTTTGAATCTATTTCAGCAGTGTTGGCTTTAGCCTTCAGTTTACTTGCAGAGCATCCTTCAGTCTTACAAGAGTTGACTGCTGAGCATGAAGCTATTCTCAAAAACAGAGAAGATCCAAATACTTCACTCACATGGGATGAATATAAATCGATGACTTTTACTCTTCAGGTTATCAACGAAACTCTTCGGTTGGGTAATGTTGCACCCGGCTTGTTGCGTAGAGCTTTGAGAGACATCCCAATAAAAGGATTTACAATCCCAGAAGGTTGGACGATTATGGTTGTCACGTCTGCACTTCAGTTAAATCCCAACACATTCGAGGATCCCATTAAGTTCAATCCATGGCGTTGGAAGGACATTGATTCGCACTCTATACCCAAGAATTTCATGCCTTTTGGTGGAGGAATGAGACAATGTGCCGGGGCAGAGTATAGTAGGGTTTTCTTGTCTACATTTTTCCATGTCTTGGTCACCAAATATAGGTGGACAACAATCAAAGGAGCACGGATTGCTCGAAATCCCATTTTAGGGTTTGGTGATGGCATTCACATTAAGTTCTCAGAGAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

477

Amino Acids

54.22

Weight (kDa)

7.7

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	34 - 454	8.1e-56	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1321
AccI	GTMKAC	1 cut(s)	1304
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	4 cut(s)	254, 962, 1172, 1185
AcsI	RAATTY	3 cut(s)	266, 464, 1237
AcuI	CTGAAG	4 cut(s)	874, 897, 1004, 1136
AfaI	GTAC	3 cut(s)	317, 392, 679
AfiI	CCNNNNNNNGG	8 cut(s)	128, 694, 1100, 1253, 1321, 1335, 1382, 1383
AhlI	ACTAGT	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	1143
AjnI	CCWGG	2 cut(s)	103, 655
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	159, 257, 947, 1079
AluI	AGCT	4 cut(s)	159, 257, 947, 1079
Alw21I	GWGCWC	1 cut(s)	1360
Alw26I	GTCTC	5 cut(s)	128, 724, 740, 1080, 1258
AlwI	GGATC	4 cut(s)	254, 962, 1172, 1185
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	3 cut(s)	266, 464, 1237
ArsI	GACNNNNNNTTYG	4 cut(s)	127, 159, 201, 233
Asp700I	GAANNNNTTC	2 cut(s)	948, 1038
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	2 cut(s)	1062, 1276
AsuHPI	GGTGA	8 cut(s)	43, 52, 143, 167, 365, 732, 1318, 1403
AvaII	GGWCC	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	1177
Bbv12I	GWGCWC	1 cut(s)	1360
BccI	CCATC	2 cut(s)	620, 1388
BciT130I	CCWGG	2 cut(s)	105, 657
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	2 cut(s)	147, 769
BcnI	CCSGG	2 cut(s)	1062, 1276
BcoDI	GTCTC	5 cut(s)	128, 724, 740, 1080, 1258
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	167, 225
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	2 cut(s)	169, 336
BlpI	GCTNAGC	1 cut(s)	936
Bme1390I	CCNGG	4 cut(s)	105, 657, 1062, 1276
Bme18I	GGWCC	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	1143
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	77, 1179
BmrFI	CCNGG	4 cut(s)	105, 657, 1062, 1276
BmsI	GCATC	3 cut(s)	387, 565, 916
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	722
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	1062, 1276
Bsa29I	ATCGAT	1 cut(s)	1004
BsaAI	YACGTR	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	47
BsaI	GGTCTC	2 cut(s)	128, 740
BsaJI	CCNNGG	4 cut(s)	655, 656, 1196, 1275
Bsc4I	CCNNNNNNNGG	8 cut(s)	128, 694, 1100, 1253, 1321, 1335, 1382, 1383
Bse1I	ACTGG	2 cut(s)	62, 242
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	105, 657
BseCI	ATCGAT	1 cut(s)	1004
BseDI	CCNNGG	4 cut(s)	655, 656, 1196, 1275
BseGI	GGATG	3 cut(s)	907, 997, 1089
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	8 cut(s)	128, 694, 1100, 1253, 1321, 1335, 1382, 1383
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	8 cut(s)	154, 417, 543, 590, 735, 736, 927, 1428
BseNI	ACTGG	2 cut(s)	62, 242
BsgI	GTGCAG	1 cut(s)	1131
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	1004
BsiHKAI	GWGCWC	1 cut(s)	1360
BsiSI	CCGG	2 cut(s)	1062, 1275
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	8 cut(s)	128, 694, 1100, 1253, 1321, 1335, 1382, 1383
BsmAI	GTCTC	5 cut(s)	128, 724, 740, 1080, 1258
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	1398
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	2 cut(s)	128, 740
Bsp1286I	GDGCHC	1 cut(s)	1360
Bsp143I	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	1 cut(s)	1196
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	8 cut(s)	153, 418, 542, 591, 735, 736, 928, 1427
BspDI	ATCGAT	1 cut(s)	1004
BspLI	GGNNCC	2 cut(s)	77, 1179
BspPI	GGATC	4 cut(s)	254, 962, 1172, 1185
BspTNI	GGTCTC	2 cut(s)	128, 740
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	62, 242
BssECI	CCNNGG	4 cut(s)	655, 656, 1196, 1275
BssMI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
BssT1I	CCWWGG	1 cut(s)	1196
Bst2UI	CCWGG	2 cut(s)	105, 657
Bst6I	CTCTTC	2 cut(s)	1023, 1044
BstAPI	GCANNNNNTGC	1 cut(s)	1364
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	526
BstDSI	CCRYGG	1 cut(s)	1196
BstEII	GGTNACC	1 cut(s)	1324
BstF5I	GGATG	3 cut(s)	907, 997, 1089
BstKTI	GATC	7 cut(s)	150, 172, 262, 339, 772, 970, 1180
BstMAI	GTCTC	5 cut(s)	128, 724, 740, 1080, 1258
BstMBI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	878, 1364
BstNI	CCWGG	2 cut(s)	105, 657
BstNSI	RCATGY	2 cut(s)	524, 709
BstPI	GGTNACC	1 cut(s)	1324
BstSCI	CCNGG	4 cut(s)	103, 655, 1060, 1274
BstSNI	TACGTA	1 cut(s)	394
BstX2I	RGATCY	4 cut(s)	169, 336, 967, 1177
BstXI	CCANNNNNNTGG	2 cut(s)	1122, 1203
BstYI	RGATCY	4 cut(s)	169, 336, 967, 1177
Bsu15I	ATCGAT	1 cut(s)	1004
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	1 cut(s)	1004
BtgI	CCRYGG	1 cut(s)	1196
BtrI	CACGTC	1 cut(s)	1143
BtsCI	GGATG	3 cut(s)	907, 997, 1089
BtsI	GCAGTG	2 cut(s)	378, 879
BtsIMutI	CAGTG	3 cut(s)	55, 378, 879
Cac8I	GCNNGC	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	1004
Csp6I	GTAC	3 cut(s)	316, 391, 678
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviQI	GTAC	3 cut(s)	316, 391, 678
DpnI	GATC	7 cut(s)	149, 171, 261, 338, 771, 969, 1179
DpnII	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Eam1104I	CTCTTC	2 cut(s)	1023, 1044
EarI	CTCTTC	2 cut(s)	1023, 1044
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	1196
Eco31I	GGTCTC	2 cut(s)	128, 740
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	4 cut(s)	874, 897, 1004, 1136
Eco91I	GGTNACC	1 cut(s)	1324
EcoO65I	GGTNACC	1 cut(s)	1324
EcoRI	GAATTC	2 cut(s)	266, 464
EcoRII	CCWGG	2 cut(s)	103, 655
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	1196
ErhI	CCWWGG	1 cut(s)	1196
FaqI	GGGAC	1 cut(s)	673
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	147, 769
FblI	GTMKAC	1 cut(s)	1304
FokI	GGATG	3 cut(s)	894, 1004, 1076
FspBI	CTAG	2 cut(s)	167, 225
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	1062, 1275
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HinfI	GANTC	6 cut(s)	356, 412, 503, 737, 860, 1217
HpaII	CCGG	2 cut(s)	1062, 1275
HphI	GGTGA	8 cut(s)	43, 52, 143, 167, 365, 732, 1318, 1403
Hpy166II	GTNNAC	6 cut(s)	6, 385, 896, 930, 1305, 1341
Hpy188I	TCNGA	3 cut(s)	222, 811, 1417
Hpy188III	TCNNGA	3 cut(s)	263, 409, 500
Hpy8I	GTNNAC	6 cut(s)	6, 385, 896, 930, 1305, 1341
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	7 cut(s)	287, 344, 688, 898, 921, 1112, 1201
HpyCH4IV	ACGT	2 cut(s)	393, 1142
HpyCH4V	TGCA	7 cut(s)	87, 346, 554, 665, 902, 1058, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	878, 1364
HpySE526I	ACGT	2 cut(s)	393, 1142
Ksp22I	TGATCA	2 cut(s)	147, 769
Kzo9I	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
LmnI	GCTCC	3 cut(s)	399, 453, 1355
LweI	GCATC	3 cut(s)	387, 565, 916
MaeI	CTAG	2 cut(s)	167, 225
MaeII	ACGT	2 cut(s)	393, 1142
MaeIII	GTNAC	3 cut(s)	697, 1138, 1324
MalI	GATC	7 cut(s)	149, 171, 261, 338, 771, 969, 1179
MboI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
MboII	GAAGA	6 cut(s)	89, 164, 331, 977, 1010, 1031
MflI	RGATCY	4 cut(s)	169, 336, 967, 1177
MhlI	GDGCHC	1 cut(s)	1360
MluCI	AATT	6 cut(s)	266, 464, 544, 673, 774, 1237
MmeI	TCCRAC	2 cut(s)	1103, 1184
MroXI	GAANNNNTTC	2 cut(s)	948, 1038
MseI	TTAA	5 cut(s)	186, 543, 1157, 1185, 1407
MslI	CAYNNNNRTG	3 cut(s)	351, 420, 985
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	2 cut(s)	1062, 1275
MspR9I	CCNGG	4 cut(s)	105, 657, 1062, 1276
Mva1269I	GAATGC	1 cut(s)	1398
MvaI	CCWGG	2 cut(s)	105, 657
MwoI	GCNNNNNNNGC	2 cut(s)	878, 1364
NciI	CCSGG	2 cut(s)	1062, 1276
NcoI	CCATGG	1 cut(s)	1196
NdeII	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
NlaIV	GGNNCC	2 cut(s)	77, 1179
NmuCI	GTSAC	2 cut(s)	1138, 1324
NspI	RCATGY	2 cut(s)	524, 709
OliI	CACNNNNGTG	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	1 cut(s)	1366
PctI	GAATGC	1 cut(s)	1398
PdmI	GAANNNNTTC	2 cut(s)	948, 1038
PfeI	GAWTC	6 cut(s)	356, 412, 503, 737, 860, 1217
PflMI	CCANNNNNTGG	1 cut(s)	1321
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	103, 655
PspEI	GGTNACC	1 cut(s)	1324
PspGI	CCWGG	2 cut(s)	103, 655
PspN4I	GGNNCC	2 cut(s)	77, 1179
PspPI	GGNCC	1 cut(s)	209
PsuI	RGATCY	4 cut(s)	169, 336, 967, 1177
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	317, 392, 679
RsaNI	GTAC	3 cut(s)	316, 391, 678
RseI	CAYNNNNRTG	3 cut(s)	351, 420, 985
SaqAI	TTAA	5 cut(s)	186, 543, 1157, 1185, 1407
Sau3AI	GATC	7 cut(s)	147, 169, 259, 336, 769, 967, 1177
Sau96I	GGNCC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	105, 657, 1062, 1276
SduI	GDGCHC	1 cut(s)	1360
SfaNI	GCATC	3 cut(s)	387, 565, 916
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	3 cut(s)	351, 420, 985
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SnaBI	TACGTA	1 cut(s)	394
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	6 cut(s)	266, 464, 544, 673, 774, 1237
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	167, 225
StyD4I	CCNGG	4 cut(s)	103, 655, 1060, 1274
StyI	CCWWGG	1 cut(s)	1196
TaiI	ACGT	2 cut(s)	396, 1145
TaqI	TCGA	3 cut(s)	1004, 1173, 1369
TasI	AATT	6 cut(s)	266, 464, 544, 673, 774, 1237
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	6 cut(s)	356, 412, 503, 737, 860, 1217
Tru1I	TTAA	5 cut(s)	186, 543, 1157, 1185, 1407
Tru9I	TTAA	5 cut(s)	186, 543, 1157, 1185, 1407
TscAI	CASTG	3 cut(s)	62, 378, 879
TseFI	GTSAC	2 cut(s)	1138, 1324
Tsp45I	GTSAC	2 cut(s)	1138, 1324
TspDTI	ATGAA	5 cut(s)	172, 363, 957, 1008, 1231
TspGWI	ACGGA	1 cut(s)	1375
TspRI	CASTG	3 cut(s)	62, 378, 879
Van91I	CCANNNNNTGG	1 cut(s)	1321
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	3 cut(s)	266, 464, 1237
XceI	RCATGY	2 cut(s)	524, 709
XmiI	GTMKAC	1 cut(s)	1304
XmnI	GAANNNNTTC	2 cut(s)	948, 1038
XspI	CTAG	2 cut(s)	167, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.