Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Forward (+)

18610177 .. 18612356

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0131700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTCGAGAAGGCATTTTGGACGGGCTGCAACAGTTCCATAGAGGAACTTCTGCAGTTCATGGATCAGCGAAAATGGGATCAGTTGGACTATGATTGTTTGGTGAATATCTTTGGAAAAGTTGGAAGAGGTGGTATGGAGTCACTGCTCATGGATGTTCCTTTTGTCTGCAAGTCGTGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAAAGTCTCATTTTTCCCATCATTTTCACTAGTCTTTATAATACTGATGTTGAAACTGAAGACTGGACTTTTGATCCCTTTTTAAAAAGATTTGTTTTTGAATATCGAATCAACAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTCAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGTGCTTCACAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTTGCCTAAAGCTTTTGTCTTTGCCTGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGTATTTGCTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCCCAAATAGGCCTTCACTGCAAGAATTTCTATTATTTAGATATTCCTGACTGTCTGGTTCGCAAAGATGCTGCATTGGCAATTGCAAAGTTGCCTAATCTTAAGCACATAATTATGATGAATGCAAAGATCGAACGGGTTAATTTTGTTAGATTACTGAAGGGCTGCAAAAAACTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAAAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGATTTTTTGATCGCCATTCCAAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTATGATGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

310

Amino Acids

35.93

Weight (kDa)

8.44

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AarI	CACCTGC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	486
AclWI	GGATC	5 cut(s)	72, 87, 191, 278, 499
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	288, 764
AfiI	CCNNNNNNNGG	2 cut(s)	571, 883
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	263, 311, 847
AhlI	ACTAGT	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	4 cut(s)	582, 614, 883, 915
AluBI	AGCT	4 cut(s)	330, 440, 460, 558
AluI	AGCT	4 cut(s)	330, 440, 460, 558
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	5 cut(s)	72, 87, 191, 278, 499
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	5 cut(s)	27, 437, 558, 656, 750
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsuHPI	GGTGA	2 cut(s)	115, 815
AvaI	CYCGRG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	14, 449, 545, 643, 737
BccI	CCATC	3 cut(s)	236, 344, 917
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	2 cut(s)	240, 861
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	791
BisI	GCNGC	5 cut(s)	28, 438, 559, 657, 751
BlsI	GCNGC	5 cut(s)	29, 439, 560, 658, 752
BmeT110I	CYCGRG	1 cut(s)	5
BmsI	GCATC	3 cut(s)	643, 763, 787
BpiI	GAAGAC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	853, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 883
Bse1I	ACTGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	853, 882
BseGI	GGATG	3 cut(s)	160, 383, 778
BseLI	CCNNNNNNNGG	2 cut(s)	571, 883
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	5 cut(s)	14, 449, 545, 643, 737
BshFI	GGCC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	571, 883
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	344, 712
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	5
Bsp143I	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BspANI	GGCC	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	907
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	5 cut(s)	72, 87, 191, 278, 499
BspTI	CTTAAG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	853, 882
BssMI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BssT1I	CCWWGG	2 cut(s)	853, 882
Bst4CI	ACNGT	2 cut(s)	35, 638
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	190, 474
BstF5I	GGATG	3 cut(s)	160, 383, 778
BstKTI	GATC	7 cut(s)	67, 82, 199, 286, 507, 717, 874
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 662
BstNSI	RCATGY	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	14, 449, 545, 643, 737
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	160, 383, 778
BtsI	GCAGTG	3 cut(s)	143, 339, 601
BtsIMutI	CAGTG	5 cut(s)	143, 339, 422, 601, 844
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	190, 474
CciI	TCATGA	1 cut(s)	907
CviAII	CATG	5 cut(s)	61, 151, 431, 566, 908
CviJI	RGCY	9 cut(s)	27, 192, 330, 397, 440, 460, 558, 597, 750
CviKI_1	RGCY	9 cut(s)	27, 192, 330, 397, 440, 460, 558, 597, 750
DpnI	GATC	7 cut(s)	66, 81, 198, 285, 506, 716, 873
DpnII	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	853, 882
Eco147I	AGGCCT	1 cut(s)	597
Eco57I	CTGAAG	2 cut(s)	288, 764
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	853, 882
ErhI	CCWWGG	2 cut(s)	853, 882
FaeI	CATG	5 cut(s)	64, 154, 434, 569, 911
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	5 cut(s)	60, 150, 430, 565, 907
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	28, 438, 559, 657, 751
FokI	GGATG	3 cut(s)	167, 390, 785
Fsp4HI	GCNGC	5 cut(s)	28, 438, 559, 657, 751
FspBI	CTAG	2 cut(s)	240, 861
GluI	GCNGC	5 cut(s)	28, 438, 559, 657, 751
HaeIII	GGCC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	64, 154, 434, 569, 911
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	140, 318
HphI	GGTGA	2 cut(s)	115, 815
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188III	TCNNGA	5 cut(s)	7, 498, 632, 861, 908
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	4, 608, 739
HpyCH4III	ACNGT	2 cut(s)	35, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 662
Hsp92II	CATG	5 cut(s)	64, 154, 434, 569, 911
Kzo9I	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
LpnPI	CCDG	9 cut(s)	259, 379, 414, 486, 522, 626, 645, 786, 790
Lsp1109I	GCAGC	5 cut(s)	14, 449, 545, 643, 737
LweI	GCATC	3 cut(s)	643, 763, 787
MaeI	CTAG	2 cut(s)	240, 861
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	7 cut(s)	66, 81, 198, 285, 506, 716, 873
MboI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
MboII	GAAGA	2 cut(s)	138, 281
MfeI	CAATTG	1 cut(s)	666
MluCI	AATT	5 cut(s)	610, 666, 696, 727, 781
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	66, 103
MnlI	CCTC	3 cut(s)	37, 122, 880
MseI	TTAA	3 cut(s)	293, 687, 726
MslI	CAYNNNNRTG	2 cut(s)	698, 837
MspCI	CTTAAG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	344, 712
MwoI	GCNNNNNNNGC	2 cut(s)	603, 662
NdeII	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
NlaIII	CATG	5 cut(s)	64, 154, 434, 569, 911
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	1 cut(s)	907
PaqCI	CACCTGC	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	2 cut(s)	344, 712
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	29, 439, 560, 658, 752
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	57
RseI	CAYNNNNRTG	2 cut(s)	698, 837
SaqAI	TTAA	3 cut(s)	293, 687, 726
SatI	GCNGC	5 cut(s)	28, 438, 559, 657, 751
Sau3AI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
SchI	GAGTC	1 cut(s)	149
SetI	ASST	8 cut(s)	133, 332, 403, 442, 462, 560, 805, 859
SfaNI	GCATC	3 cut(s)	643, 763, 787
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	2 cut(s)	698, 837
SmlI	CTYRAG	2 cut(s)	5, 686
SmoI	CTYRAG	2 cut(s)	5, 686
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	5 cut(s)	610, 666, 696, 727, 781
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	240, 861
StuI	AGGCCT	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	853, 882
TaaI	ACNGT	2 cut(s)	35, 638
TaqI	TCGA	4 cut(s)	6, 316, 717, 795
TasI	AATT	5 cut(s)	610, 666, 696, 727, 781
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	3 cut(s)	293, 687, 726
Tru9I	TTAA	3 cut(s)	293, 687, 726
TscAI	CASTG	5 cut(s)	150, 346, 429, 608, 844
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	5 cut(s)	27, 437, 558, 656, 750
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	49, 337, 719, 896
TspRI	CASTG	5 cut(s)	150, 346, 429, 608, 844
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	686
XapI	RAATTY	1 cut(s)	610
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	240, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.