Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001293

Physical Location & Seq

Genomic Coordinates Reverse (-)

42582837 .. 42583575

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG239100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGTTCTGCAAACTCGTGGCAGCTACGTGACCGTAGAAATGTCTTAAAGAGGTTGTACTCCCCTACTGGTTTAGGAAAGGGGAGGCATGCTATGACTAGTGAAACCGGATCTCTCATTGTTCCAGGAAGAGAGGGTGATCATCACCGATCGTATTGTCTACTCGCAATGTGGACTGTGGTAGGATTGTGTTTAGTAGCTTTACTAGTGATATATGTCACTCGCCGGGTTAGCAAATGTAGAAATCCAAAATGCAATGGTGTTCTTCCTCCAGATTCAACATTGGGTTTGCCTCTCATTAGTGAGAGCCTCAGTTTGATCATTCCAATATACTCCCTGGATCTTCACCCTTTCATTAAGAAGAGACTTCAAAAGTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

10.16

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001293)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g16500 FvH4_2g16500
malus_domestica	MD05G1133200.v1.1 MD05G1133300.v1.1 MD05G1133400.v1.1 MD10G1138400.v1.1
prunus_persica	Prupe.8G177200_v2.0.a1 Prupe.8G177300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0490971 RchiOBHm_Chr6g0280371 RchiOBHm_Chr6g0280421 RchiOBHm_Chr6g0280441 RchiOBHm_Chr6g0280471 RchiOBHm_Chr6g0280481 RchiOBHm_Chr6g0280521
rosa_laevigata	RLG00000013058 RLG00000013063 RLG00000013064 RLG00000022868
rosa_multiflora	Rmu_co8277759.1_g000001 Rmu_sc0002754.1_g000040 Rmu_sc0004211.1_g000027 Rmu_sc0005585.1_g000006 Rmu_sc0015818.1_g000001 Rmu_ssc0000386.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188020 Rroxscaffold_7G00188060
rosa_rugosa	Rorug06G0131600 Rorug06G0131700 Rorug06G0131800 Rorug06G0131800
rosa_samantha	Rh3AG295400 Rh3BG331700 Rh3CG328600 Rh3DG328800 Rh3DG328900 Rh3DG329200 Rh6AG243300 Rh6AG243600 Rh6AG243700 Rh6AG244200 Rh6BG245900 Rh6BG246100 Rh6BG246700 Rh6CG247500 Rh6CG247700 Rh6CG248100 Rh6DG238900 Rh6DG239100 Rh6DG239400 Rh6DG239500
rosa_wichuraiana	Rw3G026060 Rw6G021140 Rw6G021150 Rw6G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	118, 348
AfaI	GTAC	2 cut(s)	59, 377
AgsI	TTSAA	2 cut(s)	279, 371
AhlI	ACTAGT	2 cut(s)	98, 205
AjnI	CCWGG	2 cut(s)	124, 336
AluBI	AGCT	2 cut(s)	25, 200
AluI	AGCT	2 cut(s)	25, 200
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	118, 348
ApeKI	GCWGC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	137, 149, 338
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	126, 338
BclI	TGATCA	2 cut(s)	139, 318
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	358
BcuI	ACTAGT	2 cut(s)	98, 205
BfaI	CTAG	2 cut(s)	99, 206
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	126, 227, 338
BmrFI	CCNGG	3 cut(s)	126, 227, 338
BpmI	CTGGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	174, 262
BseBI	CCWGG	2 cut(s)	126, 338
BseDI	CCNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	174, 262
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	108, 226
BsmAI	GTCTC	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	110, 139, 149, 318, 340
BspCNI	CTCAG	1 cut(s)	324
BspPI	GGATC	2 cut(s)	118, 348
BsrDI	GCAATG	2 cut(s)	174, 262
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	5 cut(s)	110, 139, 149, 318, 340
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	126, 338
Bst4CI	ACNGT	2 cut(s)	35, 178
Bst6I	CTCTTC	2 cut(s)	124, 356
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	311
BstKTI	GATC	5 cut(s)	113, 142, 152, 321, 343
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	5 cut(s)	110, 139, 149, 318, 340
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNI	CCWGG	2 cut(s)	126, 338
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	124, 225, 336
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	110, 340
BstYI	RGATCY	2 cut(s)	110, 340
Cac8I	GCNNGC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	58, 376
CviAII	CATG	2 cut(s)	89, 381
CviJI	RGCY	3 cut(s)	25, 200, 309
CviKI_1	RGCY	3 cut(s)	25, 200, 309
CviQI	GTAC	2 cut(s)	58, 376
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	5 cut(s)	112, 141, 151, 320, 342
DpnII	GATC	5 cut(s)	110, 139, 149, 318, 340
Eam1104I	CTCTTC	2 cut(s)	124, 356
EarI	CTCTTC	2 cut(s)	124, 356
EcoRII	CCWGG	2 cut(s)	124, 336
FaeI	CATG	2 cut(s)	92, 384
FaiI	YATR	6 cut(s)	90, 95, 214, 216, 331, 382
FatI	CATG	2 cut(s)	88, 380
FbaI	TGATCA	2 cut(s)	139, 318
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	2 cut(s)	99, 206
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	255
HapII	CCGG	2 cut(s)	108, 226
Hin1II	CATG	2 cut(s)	92, 384
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	108, 226
HphI	GGTGA	3 cut(s)	137, 149, 338
Hpy166II	GTNNAC	2 cut(s)	161, 174
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	161, 174
HpyCH4III	ACNGT	2 cut(s)	35, 178
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	11, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	92, 384
Ksp22I	TGATCA	2 cut(s)	139, 318
Kzo9I	GATC	5 cut(s)	110, 139, 149, 318, 340
LpnPI	CCDG	8 cut(s)	54, 111, 121, 138, 239, 285, 323, 350
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	99, 206
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	29, 217
MalI	GATC	5 cut(s)	112, 141, 151, 320, 342
MboI	GATC	5 cut(s)	110, 139, 149, 318, 340
MboII	GAAGA	4 cut(s)	141, 257, 335, 373
MflI	RGATCY	2 cut(s)	110, 340
MnlI	CCTC	6 cut(s)	45, 78, 127, 279, 303, 320
MseI	TTAA	2 cut(s)	47, 357
MspI	CCGG	2 cut(s)	108, 226
MspR9I	CCNGG	3 cut(s)	126, 227, 338
MvaI	CCWGG	2 cut(s)	126, 338
MwoI	GCNNNNNNNGC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	5 cut(s)	110, 139, 149, 318, 340
NlaIII	CATG	2 cut(s)	92, 384
NmuCI	GTSAC	2 cut(s)	29, 217
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	24
Ple19I	CGATCG	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	124, 336
PspGI	CCWGG	2 cut(s)	124, 336
PsuI	RGATCY	2 cut(s)	110, 340
PvuI	CGATCG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	59, 377
RsaNI	GTAC	2 cut(s)	58, 376
SaqAI	TTAA	2 cut(s)	47, 357
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	5 cut(s)	110, 139, 149, 318, 340
ScrFI	CCNGG	3 cut(s)	126, 227, 338
SetI	ASST	4 cut(s)	27, 31, 56, 202
SpeI	ACTAGT	2 cut(s)	98, 205
SphI	GCATGC	1 cut(s)	92
SspMI	CTAG	2 cut(s)	99, 206
StyD4I	CCNGG	3 cut(s)	124, 225, 336
TaaI	ACNGT	2 cut(s)	35, 178
TaiI	ACGT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	47, 357
Tru9I	TTAA	2 cut(s)	47, 357
TseFI	GTSAC	2 cut(s)	29, 217
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	29, 217
TspDTI	ATGAA	1 cut(s)	343
XceI	RCATGY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	99, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.