Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

10087759 .. 10096761

Gene Structure 9003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1093900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCCTTCAATCAATCAAGGTCGGATAAGAACGAGACGCAGTACCGGAAAACAGGGCGAACCGTAAGCTCTAATCAGCAGCACAGGGGATACTCACCATCTTACCCTAAGGGCACCAGCGCCGGTTGGCCCGGCCCTACTATCTTCTCCAACCGCAGTTTTAAGAAGAATAATAACAATGCACAAGGAGGACAATCCAGGGCAAGTGCAACCACTGTAAATACTCAGGATTCCGGTATTGCTTTTGCACAACGTGGCGGTGTACAAAACCGAGCCCATGTACAGCCCCAATTGCATGGAGGTTCTGATGCACCTGTTGCACGCACAGCTTCCCGGACAGCTGAAGCATCAGCCTCTCAGAGAAGCTCCCGAACTGTTCCAAAAGCTCCCACTTCTCAATCTGCCTCCGTGATTTCTGACACAAGAACACCCACTACACCAGCGAAGCCCCCAGGAGATGCGTCCAAGGGCTTGGCCTTTCAGTTTGGGTCTATAAACCGTGGCTTCATGAATTGGATGCAGATTCCTGCTCGAACCAGCTCAGCTCCCCCAAATTTGGATGAGCAGAAACGTGATCAGGCACGCCATGATTCTTTTAGAGCTGCGCCTTCAGTGCCAGTCCCTACTGTTCCTAAACAGCAGTTACCAAGGAAAGACTCAGCGTCCATTGATCAACCTAATGCTGCTGAGGTTCATATGGTACCCAGGGTTAAAAAGGATGTGCAAGTCTCACATGCACCCCCTCCTAGTCAAACTCAGAAACCTTCTGCTCATCCAATGGCTGGGATGTCCATGCCAATGCCATTTCATCAGCCACAGGTTCCGGTGCAATTCGGTGGCCCCAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

284

Amino Acids

30.41

Weight (kDa)

11.1

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	700
AccB1I	GGYRCC	2 cut(s)	113, 700
AccB7I	CCANNNNNTGG	1 cut(s)	782
AciI	CCGC	2 cut(s)	154, 258
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	363, 594
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	44, 264, 282, 702
AfiI	CCNNNNNNNGG	2 cut(s)	556, 782
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	661
AjnI	CCWGG	3 cut(s)	197, 451, 704
AluBI	AGCT	8 cut(s)	69, 329, 341, 366, 386, 540, 545, 602
AluI	AGCT	8 cut(s)	69, 329, 341, 366, 386, 540, 545, 602
Alw26I	GTCTC	2 cut(s)	29, 733
AoxI	GGCC	4 cut(s)	128, 133, 474, 838
ApeKI	GCWGC	3 cut(s)	79, 602, 683
ApoI	RAATTY	1 cut(s)	553
Asp718I	GGTACC	1 cut(s)	700
AspLEI	GCGC	2 cut(s)	122, 607
AspS9I	GGNCC	3 cut(s)	129, 134, 839
AsuC2I	CCSGG	2 cut(s)	132, 334
AsuHPI	GGTGA	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	113, 700
BanII	GRGCYC	1 cut(s)	277
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	91, 589, 670
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	3 cut(s)	199, 453, 706
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	2 cut(s)	574, 670
BcnI	CCSGG	2 cut(s)	132, 334
BcoDI	GTCTC	2 cut(s)	29, 733
BfaI	CTAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	80, 603, 684
BlpI	GCTNAGC	1 cut(s)	541
BlsI	GCNGC	3 cut(s)	81, 604, 685
Bme1390I	CCNGG	5 cut(s)	132, 199, 334, 453, 706
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmgT120I	GGNCC	3 cut(s)	129, 134, 839
BmiI	GGNNCC	4 cut(s)	115, 702, 822, 841
BmrFI	CCNGG	5 cut(s)	132, 199, 334, 453, 706
BmsI	GCATC	4 cut(s)	298, 356, 448, 507
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	541
BpuMI	CCSGG	2 cut(s)	132, 334
BsaJI	CCNNGG	7 cut(s)	198, 451, 465, 499, 647, 704, 705
BsaWI	WCCGGW	3 cut(s)	45, 233, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 782
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	617, 847
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	3 cut(s)	199, 453, 706
BseDI	CCNNGG	7 cut(s)	198, 451, 465, 499, 647, 704, 705
BseGI	GGATG	5 cut(s)	522, 565, 724, 772, 792
BseLI	CCNNNNNNNGG	2 cut(s)	556, 782
BseMII	CTCAG	6 cut(s)	239, 371, 555, 672, 678, 770
BseNI	ACTGG	2 cut(s)	617, 847
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	3 cut(s)	91, 589, 670
BseYI	CCCAGC	1 cut(s)	782
BshFI	GGCC	4 cut(s)	130, 135, 476, 840
BshNI	GGYRCC	2 cut(s)	113, 700
BsiSI	CCGG	6 cut(s)	46, 123, 132, 234, 334, 824
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	2 cut(s)	556, 782
BsmAI	GTCTC	2 cut(s)	29, 733
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	130, 135, 476, 840
Bsp1286I	GDGCHC	2 cut(s)	116, 277
Bsp1407I	TGTACA	2 cut(s)	262, 280
Bsp143I	GATC	2 cut(s)	574, 670
Bsp1720I	GCTNAGC	1 cut(s)	541
BspACI	CCGC	2 cut(s)	154, 258
BspANI	GGCC	4 cut(s)	130, 135, 476, 840
BspCNI	CTCAG	6 cut(s)	238, 370, 554, 671, 679, 769
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	4 cut(s)	115, 702, 822, 841
BspT107I	GGYRCC	2 cut(s)	113, 700
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	2 cut(s)	262, 280
BsrI	ACTGG	2 cut(s)	617, 847
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	7 cut(s)	198, 451, 465, 499, 647, 704, 705
BssMI	GATC	2 cut(s)	574, 670
BssT1I	CCWWGG	2 cut(s)	465, 647
Bst2UI	CCWGG	3 cut(s)	199, 453, 706
Bst4CI	ACNGT	5 cut(s)	64, 217, 376, 500, 628
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	2 cut(s)	262, 280
BstC8I	GCNNGC	2 cut(s)	322, 583
BstDEI	CTNAG	7 cut(s)	108, 225, 357, 541, 658, 687, 756
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	5 cut(s)	522, 565, 724, 772, 792
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 607
BstKTI	GATC	2 cut(s)	577, 673
BstMAI	GTCTC	2 cut(s)	29, 733
BstMBI	GATC	2 cut(s)	574, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 317, 326, 613
BstNI	CCWGG	3 cut(s)	199, 453, 706
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	5 cut(s)	130, 197, 332, 451, 704
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	91, 589, 670
BstXI	CCANNNNNNTGG	2 cut(s)	296, 472
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	130, 135, 476, 840
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	5 cut(s)	522, 565, 724, 772, 792
BtsIMutI	CAGTG	2 cut(s)	213, 618
Cac8I	GCNNGC	2 cut(s)	322, 583
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	2 cut(s)	122, 607
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	129, 134, 839
CseI	GACGC	3 cut(s)	46, 450, 651
Csp6I	GTAC	4 cut(s)	43, 263, 281, 701
CviAII	CATG	6 cut(s)	278, 296, 508, 587, 734, 793
CviQI	GTAC	4 cut(s)	43, 263, 281, 701
DdeI	CTNAG	7 cut(s)	108, 225, 357, 541, 658, 687, 756
DpnI	GATC	2 cut(s)	576, 672
DpnII	GATC	2 cut(s)	574, 670
DraIII	CACNNNGTG	1 cut(s)	254
DriI	GACNNNNNGTC	1 cut(s)	661
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	465, 647
Eco24I	GRGCYC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	363, 594
Eco81I	CCTNAGG	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	197, 451, 704
EcoT14I	CCWWGG	2 cut(s)	465, 647
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	465, 647
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	6 cut(s)	281, 299, 511, 590, 737, 796
FaiI	YATR	9 cut(s)	279, 297, 494, 509, 588, 696, 698, 735, 794
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	6 cut(s)	277, 295, 507, 586, 733, 792
FauNDI	CATATG	1 cut(s)	696
FbaI	TGATCA	2 cut(s)	574, 670
Fnu4HI	GCNGC	3 cut(s)	80, 603, 684
FokI	GGATG	5 cut(s)	529, 572, 731, 759, 799
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	80, 603, 684
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	2 cut(s)	121, 606
GluI	GCNGC	3 cut(s)	80, 603, 684
GsaI	CCCAGC	1 cut(s)	786
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	130, 135, 476, 840
HapII	CCGG	6 cut(s)	46, 123, 132, 234, 334, 824
HgaI	GACGC	3 cut(s)	46, 450, 651
HhaI	GCGC	2 cut(s)	122, 607
Hin1II	CATG	6 cut(s)	281, 299, 511, 590, 737, 796
Hin6I	GCGC	2 cut(s)	120, 605
HinP1I	GCGC	2 cut(s)	120, 605
HinfI	GANTC	4 cut(s)	230, 523, 590, 656
HpaII	CCGG	6 cut(s)	46, 123, 132, 234, 334, 824
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	25, 307, 360, 418, 759
Hpy188III	TCNNGA	3 cut(s)	227, 369, 508
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	16, 618, 774
HpyCH4III	ACNGT	5 cut(s)	64, 217, 376, 500, 628
HpyCH4IV	ACGT	2 cut(s)	253, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 317, 326, 613
HpyF3I	CTNAG	7 cut(s)	108, 225, 357, 541, 658, 687, 756
HpySE526I	ACGT	2 cut(s)	253, 571
Hsp92II	CATG	6 cut(s)	281, 299, 511, 590, 737, 796
HspAI	GCGC	2 cut(s)	120, 605
KpnI	GGTACC	1 cut(s)	704
Ksp22I	TGATCA	2 cut(s)	574, 670
Kzo9I	GATC	2 cut(s)	574, 670
LmnI	GCTCC	3 cut(s)	371, 391, 550
Lsp1109I	GCAGC	3 cut(s)	91, 589, 670
LweI	GCATC	4 cut(s)	298, 356, 448, 507
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	253, 571
MaeIII	GTNAC	1 cut(s)	642
MalI	GATC	2 cut(s)	576, 672
MboI	GATC	2 cut(s)	574, 670
MboII	GAAGA	2 cut(s)	136, 178
MfeI	CAATTG	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	116, 277
MluCI	AATT	4 cut(s)	290, 511, 553, 830
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	6 cut(s)	182, 293, 364, 415, 682, 753
MseI	TTAA	2 cut(s)	162, 711
MslI	CAYNNNNRTG	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	6 cut(s)	46, 123, 132, 234, 334, 824
MspR9I	CCNGG	5 cut(s)	132, 199, 334, 453, 706
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	3 cut(s)	199, 453, 706
MwoI	GCNNNNNNNGC	4 cut(s)	292, 317, 326, 613
NciI	CCSGG	2 cut(s)	132, 334
NdeI	CATATG	1 cut(s)	696
NdeII	GATC	2 cut(s)	574, 670
NlaIII	CATG	6 cut(s)	281, 299, 511, 590, 737, 796
NlaIV	GGNNCC	4 cut(s)	115, 702, 822, 841
NspI	RCATGY	1 cut(s)	737
PagI	TCATGA	1 cut(s)	507
PasI	CCCWGGG	1 cut(s)	705
PfeI	GAWTC	3 cut(s)	230, 523, 590
PflMI	CCANNNNNTGG	1 cut(s)	782
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	81, 604, 685
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	197, 451, 704
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	3 cut(s)	197, 451, 704
PspN4I	GGNNCC	4 cut(s)	115, 702, 822, 841
PspPI	GGNCC	3 cut(s)	129, 134, 839
PsrI	GAACNNNNNNTAC	2 cut(s)	418, 450
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	4 cut(s)	44, 264, 282, 702
RsaNI	GTAC	4 cut(s)	43, 263, 281, 701
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	2 cut(s)	162, 711
SatI	GCNGC	3 cut(s)	80, 603, 684
Sau3AI	GATC	2 cut(s)	574, 670
Sau96I	GGNCC	3 cut(s)	129, 134, 839
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	5 cut(s)	132, 199, 334, 453, 706
SduI	GDGCHC	2 cut(s)	116, 277
SfaNI	GCATC	4 cut(s)	298, 356, 448, 507
SmiMI	CAYNNNNRTG	1 cut(s)	797
Sse9I	AATT	4 cut(s)	290, 511, 553, 830
SsiI	CCGC	2 cut(s)	154, 258
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	5 cut(s)	130, 197, 332, 451, 704
StyI	CCWWGG	2 cut(s)	465, 647
TaaI	ACNGT	5 cut(s)	64, 217, 376, 500, 628
TaiI	ACGT	2 cut(s)	256, 574
TaqI	TCGA	1 cut(s)	532
TasI	AATT	4 cut(s)	290, 511, 553, 830
TatI	WGTACW	2 cut(s)	262, 280
TfiI	GAWTC	3 cut(s)	230, 523, 590
Tru1I	TTAA	2 cut(s)	162, 711
Tru9I	TTAA	2 cut(s)	162, 711
TscAI	CASTG	2 cut(s)	220, 618
TseI	GCWGC	3 cut(s)	79, 602, 683
TspDTI	ATGAA	4 cut(s)	496, 524, 683, 797
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	220, 618
Van91I	CCANNNNNTGG	1 cut(s)	782
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	737
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.