Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

36830299 .. 36834076

Gene Structure 3778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTGATGATTCCATTACTTTGGGTCCCCAGGGTGGTCTTGCCAGAGGAATGTCTGTCAGAGGACCACCTTCAATGTCAGCTGCTCTCCCTGAGATATCTCCTAATCCTGGAGACTCCAGGAGGATGACAGCTGGTTTGAATGGTTTTAGTTCCCTCTCAGAGCGGGGAACTTACAACCCTAGGGAGGATCTAATGCCGAGATTTGTGCTGCCCGATAGATTTGGAGGTCCAGCTGCTTATGATCAGTCAAGTGCCCCAGAGCGTAATATAAATTTTGGTGGTAGGGACCCAAGGAGTTCAGATCGTAGTTTCGAAAGATCTCTGACTACACCATCCACACGTACACAGGGGGCAGCTTTAACTCAAAATGTTCCTTCAGAAAAGTCGGAAGAACGTCTTAGAGATATGTCGTTGGGAGCAATTAAGGAATTTTACAGTGCCCGAGACGAGAAGGAAGTTGTTCTATGCATCAAAGACTTGAACTCACCAAGCTTCCATCCAACAATGATATCTCTTTGGGTCACAGACTCTTTTGAGAGGAAGGACGGAGAGAGAGATCTCTTCGCAAAGCTTCTAGTTAATCTTACCAAGTCCCAGGATGGAACTTTGAGTCAGTCCCAGCTCATCAAAGGGTTTGAAAATGTTCTCTCCACCTTGGAGGATGCCGTGAATGATGCCCCTAGAGCACCAGAGTTTCTTGCCCGGATATTTGCCAAAGGCATTTTAGAAAATGTAGTTTCGTTGAATCAAATTGGGCAATTAATACGTGAAGGTGGAGAGGAGCCAGGACGACTTCTGGAAGTTGGGCTTGCAGGCAATGTTCTCGGCAATATCTTGGAGATTATCAAATCAGAGAAAGGAGAGAGTGTTCTCAATGAGATTCGTACATCCTCCAACTTGCGGTTGGAGAATTTCCGGCCTCCAGATCCTCTCAAATCAAGGACACTAGAGAAATTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

321

Amino Acids

35.21

Weight (kDa)

5.31

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	141 - 246	3.2e-16	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	2 cut(s)	166, 904
AclWI	GGATC	2 cut(s)	198, 923
AcsI	RAATTY	4 cut(s)	274, 431, 913, 956
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	346, 889
AfiI	CCNNNNNNNGG	4 cut(s)	35, 110, 187, 903
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	5 cut(s)	75, 142, 484, 641, 748
AjnI	CCWGG	5 cut(s)	30, 109, 119, 597, 787
AloI	GAACNNNNNNTCC	2 cut(s)	855, 887
AluBI	AGCT	7 cut(s)	83, 134, 236, 359, 495, 574, 625
AluI	AGCT	7 cut(s)	83, 134, 236, 359, 495, 574, 625
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	2 cut(s)	108, 441
AlwI	GGATC	2 cut(s)	198, 923
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	4 cut(s)	83, 211, 236, 356
ApoI	RAATTY	4 cut(s)	274, 431, 913, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AseI	ATTAAT	1 cut(s)	764
Asp700I	GAANNNNTTC	2 cut(s)	462, 645
AspA2I	CCTAGG	1 cut(s)	182
AspS9I	GGNCC	4 cut(s)	26, 65, 230, 289
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	17, 480
AsuII	TTCGAA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	4 cut(s)	26, 65, 230, 289
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	259, 445
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	4 cut(s)	70, 198, 223, 368
BccI	CCATC	3 cut(s)	343, 507, 596
BceAI	ACGGC	1 cut(s)	653
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 808, 842
BciT130I	CCWGG	5 cut(s)	32, 111, 121, 599, 789
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	108, 441
BfaI	CTAG	4 cut(s)	183, 578, 684, 950
BglII	AGATCT	2 cut(s)	320, 559
BisI	GCNGC	4 cut(s)	84, 212, 237, 357
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	4 cut(s)	85, 213, 238, 358
Bme1390I	CCNGG	6 cut(s)	32, 111, 121, 599, 706, 789
Bme18I	GGWCC	4 cut(s)	26, 65, 230, 289
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	4 cut(s)	26, 65, 230, 289
BmiI	GGNNCC	5 cut(s)	27, 28, 290, 291, 786
BmrFI	CCNGG	6 cut(s)	32, 111, 121, 599, 706, 789
BmsI	GCATC	3 cut(s)	480, 655, 667
BpmI	CTGGAG	3 cut(s)	103, 132, 909
Bpu14I	TTCGAA	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	706
BsaAI	YACGTR	2 cut(s)	344, 770
BsaJI	CCNNGG	6 cut(s)	30, 31, 182, 293, 597, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 110, 187, 903
Bse3DI	GCAATG	1 cut(s)	826
BseBI	CCWGG	5 cut(s)	32, 111, 121, 599, 789
BseDI	CCNNGG	6 cut(s)	30, 31, 182, 293, 597, 657
BseGI	GGATG	6 cut(s)	132, 335, 499, 607, 670, 890
BseLI	CCNNNNNNNGG	4 cut(s)	35, 110, 187, 903
BseMI	GCAATG	1 cut(s)	826
BseMII	CTCAG	2 cut(s)	84, 174
BseRI	GAGGAG	1 cut(s)	797
BseSI	GKGCMC	2 cut(s)	259, 445
BseXI	GCAGC	4 cut(s)	70, 198, 223, 368
BseYI	CCCAGC	1 cut(s)	621
BshFI	GGCC	1 cut(s)	922
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	706, 919
BslFI	GGGAC	4 cut(s)	12, 302, 580, 604
BslI	CCNNNNNNNGG	4 cut(s)	35, 110, 187, 903
BsmAI	GTCTC	2 cut(s)	108, 441
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	4 cut(s)	12, 302, 580, 604
BsnI	GGCC	1 cut(s)	922
BsoBI	CYCGRG	1 cut(s)	444
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	259, 445, 691
Bsp143I	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
BspACI	CCGC	2 cut(s)	166, 904
BspANI	GGCC	1 cut(s)	922
BspCNI	CTCAG	2 cut(s)	85, 173
BspLI	GGNNCC	5 cut(s)	27, 28, 290, 291, 786
BspPI	GGATC	2 cut(s)	198, 923
BspT104I	TTCGAA	1 cut(s)	315
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	826
BssECI	CCNNGG	6 cut(s)	30, 31, 182, 293, 597, 657
BssMI	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
BssT1I	CCWWGG	3 cut(s)	182, 293, 657
Bst2UI	CCWGG	5 cut(s)	32, 111, 121, 599, 789
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	569
BstBAI	YACGTR	2 cut(s)	344, 770
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	813, 817
BstDEI	CTNAG	3 cut(s)	93, 160, 401
BstF5I	GGATG	6 cut(s)	132, 335, 499, 607, 670, 890
BstKTI	GATC	6 cut(s)	193, 247, 307, 323, 562, 931
BstMAI	GTCTC	2 cut(s)	108, 441
BstMBI	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	5 cut(s)	32, 111, 121, 599, 789
BstSCI	CCNGG	6 cut(s)	30, 109, 119, 597, 704, 787
BstSLI	GKGCMC	2 cut(s)	259, 445
BstV1I	GCAGC	4 cut(s)	70, 198, 223, 368
BstX2I	RGATCY	4 cut(s)	190, 320, 559, 928
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	4 cut(s)	190, 320, 559, 928
BsuRI	GGCC	1 cut(s)	922
BtsCI	GGATG	6 cut(s)	132, 335, 499, 607, 670, 890
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	813, 817
Cfr13I	GGNCC	4 cut(s)	26, 65, 230, 289
Csp6I	GTAC	2 cut(s)	345, 888
CviQI	GTAC	2 cut(s)	345, 888
DdeI	CTNAG	3 cut(s)	93, 160, 401
DpnI	GATC	6 cut(s)	192, 246, 306, 322, 561, 930
DpnII	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	3 cut(s)	182, 293, 657
Eco32I	GATATC	2 cut(s)	99, 513
Eco47I	GGWCC	4 cut(s)	26, 65, 230, 289
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	444
EcoO109I	RGGNCCY	2 cut(s)	26, 289
EcoRII	CCWGG	5 cut(s)	30, 109, 119, 597, 787
EcoRV	GATATC	2 cut(s)	99, 513
EcoT14I	CCWWGG	3 cut(s)	182, 293, 657
EcoT22I	ATGCAT	1 cut(s)	473
ErhI	CCWWGG	3 cut(s)	182, 293, 657
Esp3I	CGTCTC	1 cut(s)	441
FaiI	YATR	4 cut(s)	243, 272, 410, 469
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 795, 827
FaqI	GGGAC	4 cut(s)	12, 302, 580, 604
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	84, 212, 237, 357
FokI	GGATG	6 cut(s)	139, 322, 486, 614, 677, 877
Fsp4HI	GCNGC	4 cut(s)	84, 212, 237, 357
FspBI	CTAG	4 cut(s)	183, 578, 684, 950
GluI	GCNGC	4 cut(s)	84, 212, 237, 357
GsaI	CCCAGC	1 cut(s)	625
GsuI	CTGGAG	3 cut(s)	103, 132, 909
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	2 cut(s)	706, 919
HindIII	AAGCTT	2 cut(s)	493, 572
HinfI	GANTC	6 cut(s)	11, 116, 530, 613, 748, 883
HpaII	CCGG	2 cut(s)	706, 919
HphI	GGTGA	2 cut(s)	17, 480
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	7 cut(s)	62, 163, 304, 327, 382, 391, 856
Hpy188III	TCNNGA	2 cut(s)	800, 926
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	81, 387, 448, 538, 767
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	3 cut(s)	343, 397, 769
HpyCH4V	TGCA	2 cut(s)	471, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	93, 160, 401
HpySE526I	ACGT	3 cut(s)	343, 397, 769
KflI	GGGWCCC	2 cut(s)	26, 289
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
LmnI	GCTCC	2 cut(s)	419, 784
Lsp1109I	GCAGC	4 cut(s)	70, 198, 223, 368
LweI	GCATC	3 cut(s)	480, 655, 667
MaeI	CTAG	4 cut(s)	183, 578, 684, 950
MaeII	ACGT	3 cut(s)	343, 397, 769
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	6 cut(s)	192, 246, 306, 322, 561, 930
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
MboII	GAAGA	2 cut(s)	404, 556
MflI	RGATCY	4 cut(s)	190, 320, 559, 928
MhlI	GDGCHC	3 cut(s)	259, 445, 691
MluCI	AATT	7 cut(s)	274, 423, 431, 753, 761, 913, 956
MlyI	GAGTC	3 cut(s)	110, 524, 622
MmeI	TCCRAC	4 cut(s)	369, 527, 888, 921
Mph1103I	ATGCAT	1 cut(s)	473
MroXI	GAANNNNTTC	2 cut(s)	462, 645
MseI	TTAA	4 cut(s)	362, 426, 582, 764
MspA1I	CMGCKG	3 cut(s)	83, 134, 236
MspI	CCGG	2 cut(s)	706, 919
MspR9I	CCNGG	6 cut(s)	32, 111, 121, 599, 706, 789
MvaI	CCWGG	5 cut(s)	32, 111, 121, 599, 789
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	706
NdeII	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
NlaIV	GGNNCC	5 cut(s)	27, 28, 290, 291, 786
NmeAIII	GCCGAG	2 cut(s)	225, 807
NmuCI	GTSAC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	315
PasI	CCCWGGG	1 cut(s)	31
PdmI	GAANNNNTTC	2 cut(s)	462, 645
PfeI	GAWTC	3 cut(s)	11, 748, 883
PfoI	TCCNGGA	2 cut(s)	109, 119
PkrI	GCNGC	4 cut(s)	85, 213, 238, 358
PleI	GAGTC	3 cut(s)	110, 524, 621
PpsI	GAGTC	3 cut(s)	110, 524, 621
Ppu21I	YACGTR	2 cut(s)	344, 770
PpuMI	RGGWCCY	2 cut(s)	26, 289
PshBI	ATTAAT	1 cut(s)	764
Psp5II	RGGWCCY	2 cut(s)	26, 289
Psp6I	CCWGG	5 cut(s)	30, 109, 119, 597, 787
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	5 cut(s)	30, 109, 119, 597, 787
PspN4I	GGNNCC	5 cut(s)	27, 28, 290, 291, 786
PspPI	GGNCC	4 cut(s)	26, 65, 230, 289
PspPPI	RGGWCCY	2 cut(s)	26, 289
PsuI	RGATCY	4 cut(s)	190, 320, 559, 928
PvuII	CAGCTG	3 cut(s)	83, 134, 236
RsaI	GTAC	2 cut(s)	346, 889
RsaNI	GTAC	2 cut(s)	345, 888
SaqAI	TTAA	4 cut(s)	362, 426, 582, 764
SatI	GCNGC	4 cut(s)	84, 212, 237, 357
Sau3AI	GATC	6 cut(s)	190, 244, 304, 320, 559, 928
Sau96I	GGNCC	4 cut(s)	26, 65, 230, 289
SchI	GAGTC	3 cut(s)	110, 524, 622
ScrFI	CCNGG	6 cut(s)	32, 111, 121, 599, 706, 789
SduI	GDGCHC	3 cut(s)	259, 445, 691
SfaNI	GCATC	3 cut(s)	480, 655, 667
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	4 cut(s)	26, 65, 230, 289
Sse9I	AATT	7 cut(s)	274, 423, 431, 753, 761, 913, 956
SsiI	CCGC	2 cut(s)	166, 904
SspMI	CTAG	4 cut(s)	183, 578, 684, 950
StyD4I	CCNGG	6 cut(s)	30, 109, 119, 597, 704, 787
StyI	CCWWGG	3 cut(s)	182, 293, 657
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	3 cut(s)	346, 400, 772
TaqI	TCGA	1 cut(s)	315
TasI	AATT	7 cut(s)	274, 423, 431, 753, 761, 913, 956
TfiI	GAWTC	3 cut(s)	11, 748, 883
Tru1I	TTAA	4 cut(s)	362, 426, 582, 764
Tru9I	TTAA	4 cut(s)	362, 426, 582, 764
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	83, 211, 236, 356
Tsp45I	GTSAC	1 cut(s)	523
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	4 cut(s)	26, 65, 230, 289
VspI	ATTAAT	1 cut(s)	764
XapI	RAATTY	4 cut(s)	274, 431, 913, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XmaJI	CCTAGG	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	462, 645
XspI	CTAG	4 cut(s)	183, 578, 684, 950
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.