Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

10098539 .. 10099968

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1094300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTTGACAAGGCTCTTATGGAGCCTACTTTCTGTGAGATGATTGCTAACTTCTGTTGTTCTTATGCCTTAGTGTTGCCTGATTTCAGTGAAGAAAATGAAAAGATAACTTTTAAAAGATTGCTTTTGAACAAGTGCCAGGAGGAATTTGAGAGGGGAGGAAGAGAGCAAGAGGAGACCAATAAGGCCGATGAGGAGGGTCGGGTGAAACAGTCTGAAGAAGAAAGAGAGGAGAAAAGAATCAAAGCGCGAAGACGAAGGTTGGGTAATATTAGCTTGATTGGGGAGCTATACAAAAAGAGAATGTTGACCGAGAGAGTAATGCACGAATGCATTAAAAAGTTGTTTGGTCAGCAACAGACTCCAGTTGAGCAAAATATTGAAGCTTTGTGCAAACTAATGAGCACCATTGGGGAGATGATTGATCATCCGAATGCCAAGGAGTACATGGATGCATATTTTGAAAGGATGAAAAGCTTGTCGAATAACATGAAATTATCTTCTAGTGTTAGGTTCATGTTGAATGATGCAATTGATTTGAGAAAGAATAAATGGCAGCAGAGGAGGAAAGTTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

194

Amino Acids

22.92

Weight (kDa)

8.16

Isoelectric Point (pI)

72.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	2 - 184	3.4e-35	MIF4G domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	130, 383, 464, 523, 575
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	4 cut(s)	276, 289, 386, 477
AluI	AGCT	4 cut(s)	276, 289, 386, 477
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	442, 517
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	427, 457, 474
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	4 cut(s)	188, 209, 245, 577
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	407
BsmAI	GTCTC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	335, 439
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	188
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	1 cut(s)	424
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	427, 457, 474
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	427, 457, 474
BtsIMutI	CAGTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	448, 490, 517
CviJI	RGCY	7 cut(s)	14, 25, 188, 276, 289, 386, 477
CviKI_1	RGCY	7 cut(s)	14, 25, 188, 276, 289, 386, 477
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	438
EcoT22I	ATGCAT	2 cut(s)	335, 457
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	3 cut(s)	451, 493, 520
FaiI	YATR	7 cut(s)	20, 66, 292, 449, 457, 491, 518
FatI	CATG	3 cut(s)	447, 489, 516
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	414, 464, 481
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	451, 493, 520
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	2 cut(s)	384, 475
HinfI	GANTC	2 cut(s)	240, 361
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	217, 432
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	252, 569
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	325, 333, 393, 455, 530
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	451, 493, 520
HspAI	GCGC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	22, 286
LpnPI	CCDG	4 cut(s)	93, 125, 152, 378
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	2 cut(s)	442, 517
MaeI	CTAG	1 cut(s)	504
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	6 cut(s)	104, 174, 230, 233, 264, 492
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	3 cut(s)	146, 494, 531
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	9 cut(s)	136, 147, 152, 166, 187, 190, 223, 555, 558
Mph1103I	ATGCAT	2 cut(s)	335, 457
MseI	TTAA	2 cut(s)	114, 336
MslI	CAYNNNNRTG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	2 cut(s)	335, 439
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	250
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	451, 493, 520
NlaIV	GGNNCC	1 cut(s)	24
NsiI	ATGCAT	2 cut(s)	335, 457
PctI	GAATGC	2 cut(s)	335, 439
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	24
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	114, 336
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	6 cut(s)	263, 278, 291, 388, 479, 515
SfaNI	GCATC	2 cut(s)	442, 517
SmiMI	CAYNNNNRTG	1 cut(s)	432
Sse9I	AATT	3 cut(s)	146, 494, 531
SspI	AATATT	2 cut(s)	271, 379
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	482
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	146, 494, 531
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	114, 336
Tru9I	TTAA	2 cut(s)	114, 336
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	114, 485, 505, 506
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	504
Zsp2I	ATGCAT	2 cut(s)	335, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.