Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

10097492 .. 10098290

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1094100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACCAGTATAATTTCAAGGCAGGTAGCTGCTGATGCTCCTCAGCAAGTTGCTGTAGGGAGAGAGAAAGATGCACCGGTTAAAGCTGCGCCAGATGATTGGGAAGACGCTGCTGACATCTATACCCCGAAACTGGAAACCTCAGATACTGGAGAGCAAGTCCGTGGAGTGGATGATTCTGACAAAGATGGACATGAACATGGAGTGAAGAAATATTCCAGAGATTTCCTTTTGAAGTTTTCTAACCAATTTGCTGAGCTTGCAGAAGATTTTGATATTATGTCTCTTATAGCAGAGATCTTGAATGCTAGTGTGAATGCTGCTCCTGCTACTGCTTCAGTTAAAAAAAAGGTTTCAACTGAAACTGAGGGTACATGTGAGGAGAACATTGGTGGTGGTGGGGATGCTCTTACAGTGTCAGACTTCAGGGACAAACCTGAACTGAGTAGAACTAAGAGTACTATTTCAAAGGGGAAGAAGAAAAGAAAAGAAATTCTTAAGAAAAGAAAAGAAATTCTTTCTAAGGCAGATGCTGCTGGCGTGATCTCTGCTCCTGCTACTGCTTATGTTGAAAAACAGGTTTCAAATCTTTTGTCCTCTTCTTCAGTTGCTCCAACTGAGGAGTCTGTACCAGTTGTGACCACCACTGAACCAGAAGAATTATTGACAGGCAAAAAGGAGCTGCAAGACTTGACCGTCGCGGGAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

238

Amino Acids

25.44

Weight (kDa)

4.89

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	13
AccII	CGCG	1 cut(s)	701
AciI	CCGC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	492, 513
AcuI	CTGAAG	3 cut(s)	321, 409, 588
AfaI	GTAC	3 cut(s)	373, 460, 630
AfiI	CCNNNNNNNGG	2 cut(s)	133, 169
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	7 cut(s)	18, 235, 304, 357, 468, 572, 585
AluBI	AGCT	4 cut(s)	29, 86, 259, 682
AluI	AGCT	4 cut(s)	29, 86, 259, 682
Alw26I	GTCTC	1 cut(s)	288
AlwNI	CAGNNNCTG	2 cut(s)	149, 533
ApeKI	GCWGC	6 cut(s)	29, 86, 110, 320, 533, 682
ApoI	RAATTY	2 cut(s)	492, 513
ArsI	GACNNNNNNTTYG	2 cut(s)	578, 610
AsiGI	ACCGGT	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	6 cut(s)	16, 73, 97, 307, 520, 669
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	6 cut(s)	30, 87, 111, 321, 534, 683
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	6 cut(s)	31, 88, 112, 322, 535, 684
BmcAI	AGTACT	1 cut(s)	460
BmsI	GCATC	4 cut(s)	25, 61, 394, 520
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 169
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	4 cut(s)	6, 138, 154, 632
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	178, 409
BseLI	CCNNNNNNNGG	2 cut(s)	133, 169
BseMII	CTCAG	6 cut(s)	56, 156, 246, 357, 434, 609
BseNI	ACTGG	4 cut(s)	6, 138, 154, 632
BseRI	GAGGAG	3 cut(s)	30, 395, 635
BseXI	GCAGC	6 cut(s)	16, 73, 97, 307, 520, 669
Bsh1236I	CGCG	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	133, 169
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	2 cut(s)	310, 322
Bsp143I	GATC	2 cut(s)	297, 543
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	701
BspCNI	CTCAG	6 cut(s)	55, 155, 247, 358, 435, 610
BspFNI	CGCG	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	4 cut(s)	6, 138, 154, 632
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	2 cut(s)	297, 543
Bst4CI	ACNGT	2 cut(s)	415, 697
Bst6I	CTCTTC	1 cut(s)	604
BstAFI	CTTAAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	261, 538
BstDEI	CTNAG	8 cut(s)	42, 142, 255, 366, 443, 453, 522, 618
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	178, 409
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	300, 546
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	297, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 260, 326, 533
BstNSI	RCATGY	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	6 cut(s)	16, 73, 97, 307, 520, 669
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	178, 409
BtsIMutI	CAGTG	2 cut(s)	420, 645
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	261, 538
CaiI	CAGNNNCTG	2 cut(s)	149, 533
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	76
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	372, 459, 629
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	3 cut(s)	194, 200, 375
CviJI	RGCY	4 cut(s)	29, 86, 259, 682
CviKI_1	RGCY	4 cut(s)	29, 86, 259, 682
CviQI	GTAC	3 cut(s)	372, 459, 629
DdeI	CTNAG	8 cut(s)	42, 142, 255, 366, 443, 453, 522, 618
DpnI	GATC	2 cut(s)	299, 545
DpnII	GATC	2 cut(s)	297, 543
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco57I	CTGAAG	3 cut(s)	321, 409, 588
FaeI	CATG	3 cut(s)	197, 203, 378
FaiI	YATR	8 cut(s)	11, 123, 195, 201, 281, 290, 376, 567
FalI	AAGNNNNNCTT	4 cut(s)	480, 512, 501, 533
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	193, 199, 374
FauI	CCCGC	1 cut(s)	694
Fnu4HI	GCNGC	6 cut(s)	30, 87, 111, 321, 534, 683
FokI	GGATG	2 cut(s)	185, 416
Fsp4HI	GCNGC	6 cut(s)	30, 87, 111, 321, 534, 683
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	6 cut(s)	30, 87, 111, 321, 534, 683
GsuI	CTGGAG	1 cut(s)	171
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	197, 203, 378
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	176, 623
HpaII	CCGG	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	145, 181, 421
Hpy188III	TCNNGA	2 cut(s)	219, 301
Hpy99I	CGWCG	1 cut(s)	701
HpyCH4III	ACNGT	2 cut(s)	415, 697
HpyCH4V	TGCA	3 cut(s)	74, 263, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 260, 326, 533
HpyF3I	CTNAG	8 cut(s)	42, 142, 255, 366, 443, 453, 522, 618
Hsp92II	CATG	3 cut(s)	197, 203, 378
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	297, 543
LmnI	GCTCC	5 cut(s)	43, 328, 556, 616, 679
Lsp1109I	GCAGC	6 cut(s)	16, 73, 97, 307, 520, 669
LweI	GCATC	4 cut(s)	25, 61, 394, 520
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	2 cut(s)	299, 545
MboI	GATC	2 cut(s)	297, 543
MboII	GAAGA	8 cut(s)	116, 220, 278, 487, 490, 591, 594, 668
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	5 cut(s)	12, 248, 492, 513, 659
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	638
MnlI	CCTC	7 cut(s)	51, 151, 361, 373, 607, 613, 700
MseI	TTAA	3 cut(s)	81, 342, 498
MslI	CAYNNNNRTG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	77
Mva1269I	GAATGC	2 cut(s)	310, 322
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	4 cut(s)	35, 260, 326, 533
NdeII	GATC	2 cut(s)	297, 543
NlaIII	CATG	3 cut(s)	197, 203, 378
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	378
PciI	ACATGT	1 cut(s)	374
PctI	GAATGC	2 cut(s)	310, 322
PfeI	GAWTC	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	31, 88, 112, 322, 535, 684
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PscI	ACATGT	1 cut(s)	374
PsrI	GAACNNNNNNTAC	2 cut(s)	442, 474
PstNI	CAGNNNCTG	2 cut(s)	149, 533
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	3 cut(s)	373, 460, 630
RsaNI	GTAC	3 cut(s)	372, 459, 629
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	81, 342, 498
SatI	GCNGC	6 cut(s)	30, 87, 111, 321, 534, 683
Sau3AI	GATC	2 cut(s)	297, 543
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	1 cut(s)	632
SetI	ASST	9 cut(s)	27, 31, 88, 143, 261, 354, 439, 582, 684
SfaNI	GCATC	4 cut(s)	25, 61, 394, 520
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	5 cut(s)	12, 248, 492, 513, 659
SsiI	CCGC	1 cut(s)	701
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	415, 697
TasI	AATT	5 cut(s)	12, 248, 492, 513, 659
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	81, 342, 498
Tru9I	TTAA	3 cut(s)	81, 342, 498
TscAI	CASTG	2 cut(s)	420, 652
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	6 cut(s)	29, 86, 110, 320, 533, 682
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	420, 652
Vha464I	CTTAAG	1 cut(s)	497
XapI	RAATTY	2 cut(s)	492, 513
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.