Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

7065126 .. 7066548

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAATTATCTTCTAGGGTTAGGTTCATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAGCAGAGGAGCAAAGTTGAAGGACCAAAAAATATTGAGGAAGTGCACAGAGATGCTGCACAAAATGTTCCTTCAGAAAATGTGTTGACTGAAGACCGTCTTAGAGATATGTCTTTGGCAGCTATTAGAGAATTTTACAGTGCTCGAGACGAGAAAGAGGCTGCTTTATGCATTAAAGACTTGAACTCACCAAGCTTCCATCCGTCGATGATATCTCTTTGGGTCACAGACTCTTTTGAGAGGAAGGACGCTGAAAGAGATCTCTTGGCAAAGCTTCTAGTCAACCTTACAAAGACCCATGATGGAACTTTGAGTCAATCTCAGCTCATCAAAGGGTTTGAAACTGTTCTGTCGACCTTAGAGGATACGGTGATTGATGCCCCGAGAGCACCAGAGTTTCTTGGCCTTATCTTTGCCAAGGTCATTTTAGAGAATGTCGTTTCCTTTAATCAGATCAGGCAATTAATACACGAAGATGGAGAGGAGCTTGCAGGCAACATTCTTGGGGACGTCTTGGAGATTATCAAGTCGGAGAAGGGAGATAACGGTTTCAACGAGGTCCGTACGTCCTCCAACTTGCTGTTGGAGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

221

Amino Acids

24.94

Weight (kDa)

5.17

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	123, 177
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	34, 86, 250, 407, 619
AluBI	AGCT	5 cut(s)	188, 261, 340, 391, 553
AluI	AGCT	5 cut(s)	188, 261, 340, 391, 553
Alw21I	GWGCWC	3 cut(s)	114, 211, 457
Alw26I	GTCTC	2 cut(s)	207, 647
Alw44I	GTGCAC	1 cut(s)	110
Ama87I	CYCGRG	2 cut(s)	210, 448
AoxI	GGCC	1 cut(s)	469
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	67, 122, 185, 227
ApoI	RAATTY	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	2 cut(s)	89, 625
AsuHPI	GGTGA	2 cut(s)	246, 448
AvaI	CYCGRG	2 cut(s)	210, 448
AvaII	GGWCC	2 cut(s)	89, 625
BaeGI	GKGCMC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	3 cut(s)	114, 211, 457
BbvI	GCAGC	4 cut(s)	79, 109, 197, 214
BccI	CCATC	3 cut(s)	273, 362, 536
BciVI	GTATCC	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	207, 647
BfaI	CTAG	2 cut(s)	15, 344
BfuI	GTATCC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	4 cut(s)	68, 123, 186, 228
BlsI	GCNGC	4 cut(s)	69, 124, 187, 229
Bme18I	GGWCC	2 cut(s)	89, 625
BmeT110I	CYCGRG	2 cut(s)	210, 448
BmgT120I	GGNCC	2 cut(s)	89, 625
BmsI	GCATC	3 cut(s)	28, 109, 433
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	43, 265
BseMII	CTCAG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	88, 563
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	79, 109, 197, 214
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	471
BsiHKAI	GWGCWC	3 cut(s)	114, 211, 457
BsiHKCI	CYCGRG	2 cut(s)	210, 448
BsiWI	CGTACG	1 cut(s)	629
BslFI	GGGAC	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	207, 647
BsmBI	CGTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	471
BsoBI	CYCGRG	2 cut(s)	210, 448
Bsp1286I	GDGCHC	3 cut(s)	114, 211, 457
Bsp143I	GATC	2 cut(s)	325, 519
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	400
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	325, 519
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	5 cut(s)	164, 206, 412, 436, 614
BstACI	GRCGYC	1 cut(s)	576
BstC8I	GCNNGC	2 cut(s)	555, 559
BstDEI	CTNAG	3 cut(s)	167, 387, 424
BstF5I	GGATG	2 cut(s)	43, 265
BstKTI	GATC	2 cut(s)	328, 522
BstMAI	GTCTC	2 cut(s)	207, 647
BstMBI	GATC	2 cut(s)	325, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	79, 109, 197, 214
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	43, 265
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	555, 559
Cfr13I	GGNCC	2 cut(s)	89, 625
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	2 cut(s)	28, 365
CviJI	RGCY	7 cut(s)	188, 227, 261, 340, 391, 471, 553
CviKI_1	RGCY	7 cut(s)	188, 227, 261, 340, 391, 471, 553
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	167, 387, 424
DpnI	GATC	2 cut(s)	327, 521
DpnII	GATC	2 cut(s)	325, 519
Eco130I	CCWWGG	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	89, 625
Eco57I	CTGAAG	2 cut(s)	123, 177
Eco88I	CYCGRG	2 cut(s)	210, 448
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	2 cut(s)	31, 368
FaiI	YATR	4 cut(s)	29, 176, 235, 366
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	2 cut(s)	27, 364
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	4 cut(s)	68, 123, 186, 228
FokI	GGATG	2 cut(s)	50, 252
Fsp4HI	GCNGC	4 cut(s)	68, 123, 186, 228
FspBI	CTAG	2 cut(s)	15, 344
GluI	GCNGC	4 cut(s)	68, 123, 186, 228
HaeIII	GGCC	1 cut(s)	471
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	2 cut(s)	31, 368
HincII	GTYRAC	3 cut(s)	153, 349, 420
HindII	GTYRAC	3 cut(s)	153, 349, 420
HindIII	AAGCTT	2 cut(s)	259, 338
HinfI	GANTC	2 cut(s)	296, 379
HphI	GGTGA	2 cut(s)	246, 448
Hpy166II	GTNNAC	4 cut(s)	112, 153, 349, 420
Hpy188I	TCNGA	3 cut(s)	142, 519, 598
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	4 cut(s)	112, 153, 349, 420
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	5 cut(s)	28, 80, 147, 304, 595
HpyCH4III	ACNGT	5 cut(s)	164, 206, 412, 436, 614
HpyCH4IV	ACGT	2 cut(s)	576, 632
HpyCH4V	TGCA	5 cut(s)	41, 112, 125, 237, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	167, 387, 424
HpySE526I	ACGT	2 cut(s)	576, 632
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	2 cut(s)	31, 368
Kzo9I	GATC	2 cut(s)	325, 519
LmnI	GCTCC	2 cut(s)	75, 550
LpnPI	CCDG	3 cut(s)	471, 508, 543
Lsp1109I	GCAGC	4 cut(s)	79, 109, 197, 214
LweI	GCATC	3 cut(s)	28, 109, 433
MaeI	CTAG	2 cut(s)	15, 344
MaeII	ACGT	2 cut(s)	576, 632
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	327, 521
MboI	GATC	2 cut(s)	325, 519
MboII	GAAGA	3 cut(s)	3, 170, 551
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	3 cut(s)	114, 211, 457
MluCI	AATT	4 cut(s)	5, 42, 197, 527
MlyI	GAGTC	2 cut(s)	290, 388
MmeI	TCCRAC	3 cut(s)	576, 630, 663
MnlI	CCTC	8 cut(s)	66, 97, 217, 300, 421, 541, 616, 646
Mph1103I	ATGCAT	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	3 cut(s)	240, 513, 530
MslI	CAYNNNNRTG	2 cut(s)	117, 540
MunI	CAATTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	2 cut(s)	325, 519
NlaIII	CATG	2 cut(s)	31, 368
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	411
Pfl23II	CGTACG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	69, 124, 187, 229
PleI	GAGTC	2 cut(s)	290, 387
PpsI	GAGTC	2 cut(s)	290, 387
PshBI	ATTAAT	1 cut(s)	530
PspLI	CGTACG	1 cut(s)	629
PspPI	GGNCC	2 cut(s)	89, 625
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	2 cut(s)	117, 540
SalI	GTCGAC	1 cut(s)	418
SaqAI	TTAA	3 cut(s)	240, 513, 530
SatI	GCNGC	4 cut(s)	68, 123, 186, 228
Sau3AI	GATC	2 cut(s)	325, 519
Sau96I	GGNCC	2 cut(s)	89, 625
SchI	GAGTC	2 cut(s)	290, 388
SduI	GDGCHC	3 cut(s)	114, 211, 457
SfaNI	GCATC	3 cut(s)	28, 109, 433
Sfr274I	CTCGAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	89, 625
SlaI	CTCGAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	117, 540
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	5, 42, 197, 527
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	15, 344
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	5 cut(s)	164, 206, 412, 436, 614
TaiI	ACGT	2 cut(s)	579, 635
TaqI	TCGA	3 cut(s)	211, 272, 419
TasI	AATT	4 cut(s)	5, 42, 197, 527
Tru1I	TTAA	3 cut(s)	240, 513, 530
Tru9I	TTAA	3 cut(s)	240, 513, 530
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	4 cut(s)	67, 122, 185, 227
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	16, 17
TspGWI	ACGGA	2 cut(s)	258, 617
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	89, 625
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	15, 344
ZraI	GACGTC	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.