Rh5CG294700

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000945
Physical Location & Seq
Forward (+)
32456822 .. 32458574
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG294700.1

Sequence Viewer

Length: 705 bp
ATGGTTTCAGTTCCGTCTCAGAGCGGGGAACTTACAACCCGAGGATGTTCTAATGCCAAGAGAATTTTACAGGTCAACGTCAGAGATATTTTCAGTAACGCTGTTATCGCACACTACACAGTTCCAGGCTCACCAAAACTATTTCAGCATTATGCTTTGATCCTAGTGGCACGCTTTTGGTGTCTGCTTCGGTTCAGGGGCATAACATCGATGTTTTTTAACATAATGCCTGGCCCTCCTGGAGTCTCCTCTTCAACTGATGCTAATGCATCTCATGTACGTCTTTACAGGCTACAGCACGGAATGACAAATGCAATTATTCAGGATGTTAGTTTCAGTGACGACAGCAACTGGATCTTGGTGTTACAACTAGATCGGCAGTTTGTTGGCCACCTAATTCAAGTTCACAAATGCCTAATCAGCAGAGCCGTGTTCATCTGGTCCCCCAGTTACACTTCCTGTTTGACTATCTCCGGACTCACAGTGTTCCAACAAAGAAGGGTTGCTGCTATGAATAGCAATATCAGTGGCCAACTTCTTCAGAGGTCTGTGATATCTGAAAATGGCAGGCTTTCATGCACAAGCAGTTCAAACTCACCTGATACCATGACTGACAGAGGTGCTGGACTTGTAGAACAACACAATGGTAGTGAAGAAACGGGGTGGGGTCTTCTTCAGATGACAACAGGAAGCAGGGATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

234

Amino Acids

25.81

Weight (kDa)

9.19

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccIII TCCGGA 1 cut(s) 473
AciI CCGC 1 cut(s) 24
AclWI GGATC 3 cut(s) 154, 362, 692
AcoI YGGCCR 2 cut(s) 388, 529
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 524, 659
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 3 cut(s) 255, 401, 591
AjnI CCWGG 3 cut(s) 124, 229, 238
Alw26I GTCTC 2 cut(s) 21, 250
AlwI GGATC 3 cut(s) 154, 362, 692
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 473
AoxI GGCC 3 cut(s) 232, 388, 529
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 233, 441
AsuHPI GGTGA 2 cut(s) 123, 588
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 441
BalI TGGCCA 2 cut(s) 390, 531
BamHI GGATCC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 662
BbvI GCAGC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 3 cut(s) 126, 231, 240
BcoDI GTCTC 2 cut(s) 21, 250
BfaI CTAG 2 cut(s) 164, 371
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 3 cut(s) 126, 231, 240
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 233, 441
BmiI GGNNCC 2 cut(s) 443, 699
BmrFI CCNGG 3 cut(s) 126, 231, 240
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 250, 278
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 356, 447
BseAI TCCGGA 1 cut(s) 473
BseBI CCWGG 3 cut(s) 126, 231, 240
BseCI ATCGAT 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 50, 331
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 356, 447
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 3 cut(s) 234, 390, 531
BshVI ATCGAT 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 21, 250
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 3 cut(s) 234, 390, 531
BsoBI CYCGRG 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 473
Bsp143I GATC 4 cut(s) 159, 354, 373, 697
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 234, 390, 531
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 209
BspEI TCCGGA 1 cut(s) 473
BspLI GGNNCC 2 cut(s) 443, 699
BspPI GGATC 3 cut(s) 154, 362, 692
BsrBI CCGCTC 1 cut(s) 24
BsrI ACTGG 2 cut(s) 356, 447
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 4 cut(s) 159, 354, 373, 697
Bst2UI CCWGG 3 cut(s) 126, 231, 240
Bst4CI ACNGT 2 cut(s) 121, 484
Bst6I CTCTTC 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 172, 569
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 50, 331
BstKTI GATC 4 cut(s) 162, 357, 376, 700
BstMAI GTCTC 2 cut(s) 21, 250
BstMBI GATC 4 cut(s) 159, 354, 373, 697
BstMWI GCNNNNNNNGC 2 cut(s) 107, 420
BstNI CCWGG 3 cut(s) 126, 231, 240
BstSCI CCNGG 3 cut(s) 124, 229, 238
BstSFI CTRYAG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 662
BstX2I RGATCY 2 cut(s) 354, 697
BstYI RGATCY 2 cut(s) 354, 697
Bsu15I ATCGAT 1 cut(s) 209
BsuRI GGCC 3 cut(s) 234, 390, 531
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 2 cut(s) 50, 331
BtsIMutI CAGTG 3 cut(s) 343, 489, 532
Cac8I GCNNGC 2 cut(s) 172, 569
CaiI CAGNNNCTG 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 233, 441
ClaI ATCGAT 1 cut(s) 209
Csp6I GTAC 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 3 cut(s) 275, 576, 607
CviJI RGCY 7 cut(s) 129, 234, 292, 390, 428, 531, 571
CviKI_1 RGCY 7 cut(s) 129, 234, 292, 390, 428, 531, 571
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 161, 356, 375, 699
DpnII GATC 4 cut(s) 159, 354, 373, 697
EaeI YGGCCR 2 cut(s) 388, 529
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 524, 659
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 3 cut(s) 124, 229, 238
EcoRV GATATC 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 3 cut(s) 278, 579, 610
FaiI YATR 7 cut(s) 153, 203, 224, 276, 512, 577, 608
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 274, 575, 606
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 57, 338
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 2 cut(s) 164, 371
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 3 cut(s) 234, 390, 531
HapII CCGG 1 cut(s) 474
Hin1II CATG 3 cut(s) 278, 579, 610
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 243, 477
HpaII CCGG 1 cut(s) 474
HphI GGTGA 2 cut(s) 123, 588
Hpy166II GTNNAC 2 cut(s) 76, 406
Hpy188I TCNGA 5 cut(s) 21, 83, 543, 559, 678
Hpy188III TCNNGA 2 cut(s) 323, 474
Hpy8I GTNNAC 2 cut(s) 76, 406
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 2 cut(s) 121, 484
HpyCH4IV ACGT 2 cut(s) 78, 280
HpyCH4V TGCA 3 cut(s) 269, 314, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 420
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 78, 280
Hsp92II CATG 3 cut(s) 278, 579, 610
Kpn2I TCCGGA 1 cut(s) 473
Kzo9I GATC 4 cut(s) 159, 354, 373, 697
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 2 cut(s) 250, 278
MaeI CTAG 2 cut(s) 164, 371
MaeII ACGT 2 cut(s) 78, 280
MaeIII GTNAC 4 cut(s) 95, 338, 363, 449
MalI GATC 4 cut(s) 161, 356, 375, 699
MbiI CCGCTC 1 cut(s) 24
MboI GATC 4 cut(s) 159, 354, 373, 697
MboII GAAGA 5 cut(s) 243, 530, 662, 665, 665
MflI RGATCY 2 cut(s) 354, 697
MlsI TGGCCA 2 cut(s) 390, 531
MluCI AATT 3 cut(s) 63, 315, 396
MluNI TGGCCA 2 cut(s) 390, 531
MlyI GAGTC 2 cut(s) 252, 471
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 5 cut(s) 35, 246, 259, 537, 611
Mox20I TGGCCA 2 cut(s) 390, 531
Mph1103I ATGCAT 1 cut(s) 271
MroI TCCGGA 1 cut(s) 473
MscI TGGCCA 2 cut(s) 390, 531
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 390, 531
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 3 cut(s) 126, 231, 240
MvaI CCWGG 3 cut(s) 126, 231, 240
MwoI GCNNNNNNNGC 2 cut(s) 107, 420
NdeII GATC 4 cut(s) 159, 354, 373, 697
NlaIII CATG 3 cut(s) 278, 579, 610
NlaIV GGNNCC 2 cut(s) 443, 699
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 251, 471
PpsI GAGTC 2 cut(s) 251, 471
Psp6I CCWGG 3 cut(s) 124, 229, 238
PspGI CCWGG 3 cut(s) 124, 229, 238
PspN4I GGNNCC 2 cut(s) 443, 699
PspPI GGNCC 2 cut(s) 233, 441
PstNI CAGNNNCTG 1 cut(s) 351
PsuI RGATCY 2 cut(s) 354, 697
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 4 cut(s) 159, 354, 373, 697
Sau96I GGNCC 2 cut(s) 233, 441
SchI GAGTC 2 cut(s) 252, 471
ScrFI CCNGG 3 cut(s) 126, 231, 240
SetI ASST 7 cut(s) 75, 81, 283, 396, 548, 601, 622
SfaNI GCATC 2 cut(s) 250, 278
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 1 cut(s) 441
Sse9I AATT 3 cut(s) 63, 315, 396
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 164, 371
StyD4I CCNGG 3 cut(s) 124, 229, 238
TaaI ACNGT 2 cut(s) 121, 484
TaiI ACGT 2 cut(s) 81, 283
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 63, 315, 396
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 3 cut(s) 343, 489, 532
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 424, 527, 564
TspGWI ACGGA 2 cut(s) 315, 690
TspRI CASTG 3 cut(s) 343, 489, 532
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 63
XspI CTAG 2 cut(s) 164, 371
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.