Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

7019246 .. 7020157

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTGAATGATGCAATTGATTTGAGAAAGAATAAATGGCAGCAGAGGAGGAAAGTTGAAGGACGAATAAAGATTGAGGAAGTACACAGAGATGCTGCACAAGAACGACAAGCACAGTCTAGTAGGCTGGTCCGTGATCCTGGAATCAATCCATCAGCTAGAAGGGGCCCTCCTATGGAATTCAGTCCAAGAGGATCAACTAAGTTATCTTCACCTAATGCCCACATGAAATTAACTCCTCAAAACTTTGAAAAACTATTCGAGCAAAGGCACCAAGCTGACAGGAAGAATGAAGTGGGTAAAGTGAGTGAGGAAGAGCAGGCCAAGCAAAGGCAGTTAAAGGCTATACTGAACAAGTTAACTCCTCAAAATTTTGAAAAACTATTCGAGCAAGTGAAAGCTGTCAATATAGAGAATGTGACGACTCTAACTGGTGTCATTTCACAGATCTTTGACAAGGCTCTTATGGAGCCTACTTTCTGTGAGATGTATGCTAACTTCTGTTTTTATCTTGCCGGAGAGTTGCCTGGTTTCAGTGAAGACAAAGAAAAGATAACTTTTAAGAGATTGCTTTTGTGCAAGTGCCAGGAGGAATTTGAGAGGGGAGAAAGAGAGCAAGAGGAGGCATATAAGGCCAATGAAGAGGGTCAGGTGAAACAGTCTGAAGAAGAAGAGGAGGAGAAAAGAATCAAAGCGCGACGACGAACATTGGGTAACATTAGATTAATTGGGGAACTATACAAAAAGAAAATGTTGACAGAGAGAATTATGCACGGATGCATTAAAAAGTTGCTAGGTCAGCAACAGACTCCAGATGAGGAAGATATTGAAGCTTTGTGCATACTAATGAGCACAATTGGGGAGATGATTGATCGATCCGAAAGCCAAGGAGCACATGGATGCATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

304

Amino Acids

35.16

Weight (kDa)

7.57

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	111 - 293	2.1e-39	MIF4G domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	1 cut(s)	697
AclWI	GGATC	3 cut(s)	131, 202, 870
AcsI	RAATTY	3 cut(s)	179, 370, 593
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	175, 330
AgsI	TTSAA	5 cut(s)	7, 59, 251, 377, 830
AjnI	CCWGG	3 cut(s)	139, 526, 585
AluBI	AGCT	4 cut(s)	158, 278, 401, 833
AluI	AGCT	4 cut(s)	158, 278, 401, 833
Alw21I	GWGCWC	2 cut(s)	854, 895
AlwI	GGATC	3 cut(s)	131, 202, 870
AoxI	GGCC	3 cut(s)	166, 321, 633
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	40, 95
ApoI	RAATTY	3 cut(s)	179, 370, 593
AseI	ATTAAT	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	3 cut(s)	130, 166, 167
AsuHPI	GGTGA	2 cut(s)	204, 664
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	170
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	2 cut(s)	854, 895
BbvI	GCAGC	2 cut(s)	52, 82
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	141, 528, 587
BfaI	CTAG	3 cut(s)	120, 159, 794
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	2 cut(s)	41, 96
BlsI	GCNGC	2 cut(s)	42, 97
Bme1390I	CCNGG	3 cut(s)	141, 528, 587
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	130, 166, 167
BmiI	GGNNCC	4 cut(s)	167, 168, 272, 471
BmrFI	CCNGG	3 cut(s)	141, 528, 587
BmsI	GCATC	3 cut(s)	82, 767, 890
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	795
Bsa29I	ATCGAT	1 cut(s)	874
BsaJI	CCNNGG	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 330
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	3 cut(s)	141, 528, 587
BseCI	ATCGAT	1 cut(s)	874
BseDI	CCNNGG	1 cut(s)	886
BseGI	GGATG	2 cut(s)	782, 905
BseLI	CCNNNNNNNGG	2 cut(s)	175, 330
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	6 cut(s)	61, 228, 354, 635, 689, 692
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	52, 82
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	168, 323, 635
BshNI	GGYRCC	1 cut(s)	270
BshVI	ATCGAT	1 cut(s)	874
BsiHKAI	GWGCWC	2 cut(s)	854, 895
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	175, 330
BsnI	GGCC	3 cut(s)	168, 323, 635
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	3 cut(s)	170, 854, 895
Bsp143I	GATC	5 cut(s)	136, 194, 447, 871, 875
BspANI	GGCC	3 cut(s)	168, 323, 635
BspDI	ATCGAT	1 cut(s)	874
BspFNI	CGCG	1 cut(s)	697
BspLI	GGNNCC	4 cut(s)	167, 168, 272, 471
BspPI	GGATC	3 cut(s)	131, 202, 870
BspQI	GCTCTTC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	886
BssMI	GATC	5 cut(s)	136, 194, 447, 871, 875
BssT1I	CCWWGG	1 cut(s)	886
Bst2UI	CCWGG	3 cut(s)	141, 528, 587
Bst4CI	ACNGT	2 cut(s)	117, 660
Bst6I	CTCTTC	3 cut(s)	309, 636, 666
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	782, 905
BstFNI	CGCG	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	5 cut(s)	139, 197, 450, 874, 878
BstMBI	GATC	5 cut(s)	136, 194, 447, 871, 875
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 632, 799
BstNI	CCWGG	3 cut(s)	141, 528, 587
BstSCI	CCNGG	3 cut(s)	139, 526, 585
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	697
BstV1I	GCAGC	2 cut(s)	52, 82
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
Bsu15I	ATCGAT	1 cut(s)	874
BsuRI	GGCC	3 cut(s)	168, 323, 635
BsuTUI	ATCGAT	1 cut(s)	874
BtsCI	GGATG	2 cut(s)	782, 905
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	697
Cfr13I	GGNCC	3 cut(s)	130, 166, 167
ClaI	ATCGAT	1 cut(s)	874
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	226, 896
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	5 cut(s)	138, 196, 449, 873, 877
DpnII	GATC	5 cut(s)	136, 194, 447, 871, 875
Eam1104I	CTCTTC	3 cut(s)	309, 636, 666
EarI	CTCTTC	3 cut(s)	309, 636, 666
Eco130I	CCWWGG	1 cut(s)	886
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	684
EcoO109I	RGGNCCY	2 cut(s)	166, 167
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	139, 526, 585
EcoT14I	CCWWGG	1 cut(s)	886
EcoT22I	ATGCAT	2 cut(s)	782, 905
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	2 cut(s)	229, 899
FatI	CATG	2 cut(s)	225, 895
Fnu4HI	GCNGC	2 cut(s)	41, 96
FokI	GGATG	1 cut(s)	789
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	41, 96
FspBI	CTAG	3 cut(s)	120, 159, 794
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	2 cut(s)	41, 96
GsuI	CTGGAG	1 cut(s)	795
HaeIII	GGCC	3 cut(s)	168, 323, 635
HapII	CCGG	1 cut(s)	516
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	2 cut(s)	229, 899
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	2 cut(s)	360, 756
HindII	GTYRAC	2 cut(s)	360, 756
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	4 cut(s)	144, 424, 687, 808
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	204, 664
Hpy166II	GTNNAC	3 cut(s)	85, 360, 756
Hpy188I	TCNGA	2 cut(s)	664, 880
Hpy188III	TCNNGA	1 cut(s)	812
Hpy8I	GTNNAC	3 cut(s)	85, 360, 756
Hpy99I	CGWCG	2 cut(s)	702, 705
HpyAV	CCTTC	2 cut(s)	53, 156
HpyCH4III	ACNGT	2 cut(s)	117, 660
HpyCH4V	TGCA	7 cut(s)	14, 98, 579, 772, 780, 840, 903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 632, 799
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	229, 899
HspAI	GCGC	1 cut(s)	695
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	136, 194, 447, 871, 875
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	469, 890
Lsp1109I	GCAGC	2 cut(s)	52, 82
LweI	GCATC	3 cut(s)	82, 767, 890
MaeI	CTAG	3 cut(s)	120, 159, 794
MaeIII	GTNAC	2 cut(s)	418, 713
MalI	GATC	5 cut(s)	138, 196, 449, 873, 877
MboI	GATC	5 cut(s)	136, 194, 447, 871, 875
MboII	GAAGA	9 cut(s)	201, 298, 326, 551, 653, 677, 680, 683, 833
MfeI	CAATTG	2 cut(s)	15, 855
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	3 cut(s)	170, 854, 895
MluCI	AATT	8 cut(s)	15, 179, 230, 370, 593, 726, 765, 855
MlyI	GAGTC	2 cut(s)	418, 802
Mph1103I	ATGCAT	2 cut(s)	782, 905
MseI	TTAA	6 cut(s)	233, 338, 359, 561, 725, 783
MslI	CAYNNNNRTG	3 cut(s)	90, 845, 898
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	3 cut(s)	141, 528, 587
MunI	CAATTG	2 cut(s)	15, 855
MvaI	CCWGG	3 cut(s)	141, 528, 587
MvnI	CGCG	1 cut(s)	697
MwoI	GCNNNNNNNGC	3 cut(s)	325, 632, 799
NdeII	GATC	5 cut(s)	136, 194, 447, 871, 875
NlaIII	CATG	2 cut(s)	229, 899
NlaIV	GGNNCC	4 cut(s)	167, 168, 272, 471
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	2 cut(s)	782, 905
PciSI	GCTCTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	144, 687
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	42, 97
PleI	GAGTC	2 cut(s)	418, 802
PpsI	GAGTC	2 cut(s)	418, 802
PshBI	ATTAAT	1 cut(s)	725
Psp6I	CCWGG	3 cut(s)	139, 526, 585
PspGI	CCWGG	3 cut(s)	139, 526, 585
PspN4I	GGNNCC	4 cut(s)	167, 168, 272, 471
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	130, 166, 167
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	3 cut(s)	90, 845, 898
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	6 cut(s)	233, 338, 359, 561, 725, 783
SatI	GCNGC	2 cut(s)	41, 96
Sau3AI	GATC	5 cut(s)	136, 194, 447, 871, 875
Sau96I	GGNCC	3 cut(s)	130, 166, 167
SchI	GAGTC	2 cut(s)	418, 802
ScrFI	CCNGG	3 cut(s)	141, 528, 587
SduI	GDGCHC	3 cut(s)	170, 854, 895
SetI	ASST	7 cut(s)	160, 217, 280, 403, 654, 799, 835
SfaNI	GCATC	3 cut(s)	82, 767, 890
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	3 cut(s)	90, 845, 898
Sse9I	AATT	8 cut(s)	15, 179, 230, 370, 593, 726, 765, 855
SspMI	CTAG	3 cut(s)	120, 159, 794
StyD4I	CCNGG	3 cut(s)	139, 526, 585
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	2 cut(s)	117, 660
TaqI	TCGA	3 cut(s)	261, 387, 874
TasI	AATT	8 cut(s)	15, 179, 230, 370, 593, 726, 765, 855
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	144, 687
Tru1I	TTAA	6 cut(s)	233, 338, 359, 561, 725, 783
Tru9I	TTAA	6 cut(s)	233, 338, 359, 561, 725, 783
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	40, 95
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	242, 306, 654
TspGWI	ACGGA	2 cut(s)	122, 789
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	3 cut(s)	179, 370, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XspI	CTAG	3 cut(s)	120, 159, 794
Zsp2I	ATGCAT	2 cut(s)	782, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.