Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

10096804 .. 10097427

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1094000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCTATGCAATTACCAATTGGTAGTACTCAAGTACAGCAGCCAGTGTTTGTTCCAGGTCTCCAGCCCCATCCAATGCAGCCCCAGGGAATTATGCATCAGGGCCAGAACATGACTTTTACCCCCCAAATGGGTCCTCAAATACCTCAGATAGGCAACTTGGGGATCAGCATGGCGTCGCAATACCCCCAACAACAGGGTAGGAAGTTTGGCGGCCCTCGTAAAACTCCTGTCAAGATTACACATCCAGATACACATGAAGAGTTGAGGCTTGATAAAAGGACAGATTCTGGTGGAATGGATGCCTCCTTAAGCAGAAGTGATAGTAAGGGTGGCAGTGAAGTTTTTTTTTCAAAATCTAGCAAATTAGAGCAGCATTCTGCTTTTGTTCAAACTACCAAACTTTCAGGTATAACTTCAAGAACTGAAACTGAAGGTACATGTGAGGAGAATATTGGTGGTGGTGGGGGAAATATTGAGAATATTGGTAGGGGTGGGGATTCTCTTACAGTGTCAGACTTCAGGGACAAACCTGAACTGAGTAGAACTAAGAGTACTATTTCAAAGGGGAAGAAGAAAAGAAAAGAAAAGAAATTCTTTCTAAGGCAGATGCTGCTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

208

Amino Acids

22.65

Weight (kDa)

9.81

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	2 cut(s)	453, 505
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	4 cut(s)	28, 36, 439, 556
AfiI	CCNNNNNNNGG	4 cut(s)	130, 131, 152, 196
AflII	CTTAAG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	354, 392, 420, 564
AjnI	CCWGG	2 cut(s)	55, 84
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	2 cut(s)	290, 613
AoxI	GGCC	2 cut(s)	103, 214
ApeKI	GCWGC	4 cut(s)	40, 79, 373, 613
ApoI	RAATTY	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	103, 134, 215
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	52, 91, 385, 600
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	57, 86
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	5 cut(s)	41, 80, 214, 374, 614
BlsI	GCNGC	5 cut(s)	42, 81, 215, 375, 615
BmcAI	AGTACT	2 cut(s)	28, 556
Bme1390I	CCNGG	2 cut(s)	57, 86
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	3 cut(s)	103, 134, 215
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	57, 86
BmsI	GCATC	3 cut(s)	106, 292, 600
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	84, 85
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 131, 152, 196
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	57, 86
BseDI	CCNNGG	2 cut(s)	84, 85
BseGI	GGATG	3 cut(s)	70, 244, 307
BseLI	CCNNNNNNNGG	4 cut(s)	130, 131, 152, 196
BseMII	CTCAG	2 cut(s)	161, 530
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	4 cut(s)	52, 91, 385, 600
BshFI	GGCC	2 cut(s)	105, 216
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	4 cut(s)	130, 131, 152, 196
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	105, 216
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	105, 216
BspCNI	CTCAG	2 cut(s)	160, 531
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	310
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	84, 85
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	57, 86
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	147, 539, 549, 602
BstENI	CCTNNNNNAGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	70, 244, 307
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNI	CCWGG	2 cut(s)	57, 86
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	55, 84
BstV1I	GCAGC	4 cut(s)	52, 91, 385, 600
BsuRI	GGCC	2 cut(s)	105, 216
BtsCI	GGATG	3 cut(s)	70, 244, 307
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	3 cut(s)	51, 343, 516
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	2 cut(s)	290, 613
Cfr13I	GGNCC	3 cut(s)	103, 134, 215
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	4 cut(s)	27, 35, 438, 555
CviAII	CATG	4 cut(s)	112, 172, 257, 441
CviJI	RGCY	6 cut(s)	43, 67, 82, 105, 216, 271
CviKI_1	RGCY	6 cut(s)	43, 67, 82, 105, 216, 271
CviQI	GTAC	4 cut(s)	27, 35, 438, 555
DdeI	CTNAG	4 cut(s)	147, 539, 549, 602
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	453, 505
EcoNI	CCTNNNNNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	55, 84
EcoT22I	ATGCAT	1 cut(s)	99
FaeI	CATG	4 cut(s)	115, 175, 260, 444
FaiI	YATR	7 cut(s)	8, 95, 113, 173, 258, 413, 442
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	4 cut(s)	111, 171, 256, 440
Fnu4HI	GCNGC	5 cut(s)	41, 80, 214, 374, 614
FokI	GGATG	3 cut(s)	57, 231, 314
Fsp4HI	GCNGC	5 cut(s)	41, 80, 214, 374, 614
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	5 cut(s)	41, 80, 214, 374, 614
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	105, 216
HgaI	GACGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	115, 175, 260, 444
HinfI	GANTC	2 cut(s)	287, 500
Hpy188I	TCNGA	2 cut(s)	150, 517
Hpy188III	TCNNGA	3 cut(s)	235, 248, 420
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4V	TGCA	3 cut(s)	10, 79, 97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	4 cut(s)	147, 539, 549, 602
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	4 cut(s)	115, 175, 260, 444
Kzo9I	GATC	1 cut(s)	165
Lsp1109I	GCAGC	4 cut(s)	52, 91, 385, 600
LweI	GCATC	3 cut(s)	106, 292, 600
MaeI	CTAG	1 cut(s)	360
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	272, 583, 586
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	5 cut(s)	11, 18, 90, 365, 593
MnlI	CCTC	6 cut(s)	147, 156, 228, 261, 316, 439
Mph1103I	ATGCAT	1 cut(s)	99
MseI	TTAA	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	57, 86
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	57, 86
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	115, 175, 260, 444
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	1 cut(s)	444
PasI	CCCWGGG	1 cut(s)	85
PciI	ACATGT	1 cut(s)	440
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	287, 500
PkrI	GCNGC	5 cut(s)	42, 81, 215, 375, 615
PpuMI	RGGWCCY	1 cut(s)	134
PscI	ACATGT	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	55, 84
PspGI	CCWGG	2 cut(s)	55, 84
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	3 cut(s)	103, 134, 215
PspPPI	RGGWCCY	1 cut(s)	134
PsrI	GAACNNNNNNTAC	2 cut(s)	538, 570
PstNI	CAGNNNCTG	2 cut(s)	290, 613
RsaI	GTAC	4 cut(s)	28, 36, 439, 556
RsaNI	GTAC	4 cut(s)	27, 35, 438, 555
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	5 cut(s)	41, 80, 214, 374, 614
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	103, 134, 215
ScaI	AGTACT	2 cut(s)	28, 556
ScrFI	CCNGG	2 cut(s)	57, 86
SetI	ASST	5 cut(s)	61, 148, 412, 439, 535
SfaNI	GCATC	3 cut(s)	106, 292, 600
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	30, 310
SmoI	CTYRAG	2 cut(s)	30, 310
Sse9I	AATT	5 cut(s)	11, 18, 90, 365, 593
SsiI	CCGC	1 cut(s)	213
SspI	AATATT	3 cut(s)	454, 475, 484
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	55, 84
TaaI	ACNGT	1 cut(s)	511
TasI	AATT	5 cut(s)	11, 18, 90, 365, 593
TatI	WGTACW	3 cut(s)	26, 34, 554
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	287, 500
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	3 cut(s)	51, 343, 516
TseI	GCWGC	4 cut(s)	40, 79, 373, 613
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	3 cut(s)	51, 343, 516
Vha464I	CTTAAG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	150
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	2 cut(s)	28, 556
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.