Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

10098292 .. 10098537

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1094200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGCAAAGAAATAATTCTGATGCCAACAGGTGGCAGAGAGATACGAATTTTCAACCTAAGGGCTTGATGGCTTCTCCTCATGCTCCATTACAGGTGATGCACAAAGCTGACAGGAAGTATGAAATGGGTAAAGTGAGTGATGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

50

Amino Acids

5.74

Weight (kDa)

8.18

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	53
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	57
BccI	CCATC	1 cut(s)	61
BmsI	GCATC	2 cut(s)	10, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	57
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	3 cut(s)	63, 71, 107
CviKI_1	RGCY	3 cut(s)	63, 71, 107
DdeI	CTNAG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	83
FaiI	YATR	2 cut(s)	81, 120
FatI	CATG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	4, 100
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	13, 77, 97
LweI	GCATC	2 cut(s)	10, 87
MluCI	AATT	2 cut(s)	13, 46
MnlI	CCTC	1 cut(s)	87
MroXI	GAANNNNTTC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	30
SetI	ASST	4 cut(s)	32, 58, 96, 109
SfaNI	GCATC	2 cut(s)	10, 87
SgeI	CNNG	5 cut(s)	40, 76, 92, 104, 124
Sse9I	AATT	2 cut(s)	13, 46
TasI	AATT	2 cut(s)	13, 46
TspDTI	ATGAA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.