Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

57350761 .. 57352123

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG374400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACGATGGGTGATAACAAGAACCCGATGCTTCAACACAACCAAGTATTTGATGTCTCAGTCAATATGCCGCCACAGGGAGGCTCCAAGTGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACTGTTTGGACTGCCAGTGCTCACATAATTACTGCTGTAATTGGGTCTGGAGTTCTATCCTTGGCTTGGGCCATAGCTCAGCTTGGATGGGTGGCTGGCCCTGCTGTCATGTTCTTGTTCTCTTTGGTGACTTACTACACTTCAACTCTGCTCTCTGCTTGCTACCGCTCCAATGATCCTGACACTGGAAAAAGGAACTACACTTACATGGATGCTGTTCAATCTAACCTAGGTAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

122

Amino Acids

13.3

Weight (kDa)

7.78

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	40 - 121	2.4e-28	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	294
AciI	CCGC	2 cut(s)	71, 292
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	77, 80, 192, 311
AgsI	TTSAA	3 cut(s)	35, 270, 347
AluBI	AGCT	2 cut(s)	203, 208
AluI	AGCT	2 cut(s)	203, 208
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	61, 116
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	106, 195, 223
ApoI	RAATTY	1 cut(s)	362
AspA2I	CCTAGG	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	195, 224
AsuHPI	GGTGA	2 cut(s)	23, 265
AvrII	CCTAGG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	2 cut(s)	98, 207
BceAI	ACGGC	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	61, 116
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	71
BlnI	CCTAGG	1 cut(s)	355
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	195, 224
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	2 cut(s)	18, 328
BpmI	CTGGAG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	186, 355
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 80, 192, 311
Bse1I	ACTGG	3 cut(s)	127, 141, 316
BseDI	CCNNGG	2 cut(s)	186, 355
BseGI	GGATG	2 cut(s)	218, 343
BseLI	CCNNNNNNNGG	4 cut(s)	77, 80, 192, 311
BseMII	CTCAG	2 cut(s)	72, 218
BseNI	ACTGG	3 cut(s)	127, 141, 316
BshFI	GGCC	3 cut(s)	108, 197, 225
BsiHKAI	GWGCWC	1 cut(s)	148
BslI	CCNNNNNNNGG	4 cut(s)	77, 80, 192, 311
BsmAI	GTCTC	2 cut(s)	61, 116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	108, 197, 225
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	301
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	71, 292
BspANI	GGCC	3 cut(s)	108, 197, 225
BspCNI	CTCAG	2 cut(s)	71, 217
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	127, 141, 316
BssECI	CCNNGG	2 cut(s)	186, 355
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	2 cut(s)	186, 355
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	223, 286
BstDEI	CTNAG	2 cut(s)	58, 204
BstF5I	GGATG	2 cut(s)	218, 343
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	61, 116
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 227
BsuRI	GGCC	3 cut(s)	108, 197, 225
BtsCI	GGATG	2 cut(s)	218, 343
BtsIMutI	CAGTG	2 cut(s)	148, 309
Cac8I	GCNNGC	2 cut(s)	223, 286
Cfr13I	GGNCC	2 cut(s)	195, 224
CviAII	CATG	2 cut(s)	235, 334
CviJI	RGCY	8 cut(s)	84, 108, 191, 197, 203, 208, 221, 225
CviKI_1	RGCY	8 cut(s)	84, 108, 191, 197, 203, 208, 221, 225
DdeI	CTNAG	2 cut(s)	58, 204
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	186, 355
EcoT14I	CCWWGG	2 cut(s)	186, 355
ErhI	CCWWGG	2 cut(s)	186, 355
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	2 cut(s)	238, 337
FaiI	YATR	5 cut(s)	68, 152, 200, 236, 335
FatI	CATG	2 cut(s)	234, 333
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	2 cut(s)	225, 350
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	1 cut(s)	71
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	108, 197, 225
Hin1II	CATG	2 cut(s)	238, 337
HphI	GGTGA	2 cut(s)	23, 265
Hpy188III	TCNNGA	2 cut(s)	174, 305
HpyCH4III	ACNGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 227
HpyF3I	CTNAG	2 cut(s)	58, 204
Hsp92II	CATG	2 cut(s)	238, 337
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	89, 299
LpnPI	CCDG	8 cut(s)	62, 108, 154, 159, 207, 240, 297, 318
LweI	GCATC	2 cut(s)	18, 328
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	303
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	153, 165, 362
MnlI	CCTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	90, 227
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	238, 337
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	195, 224
PsrI	GAACNNNNNNTAC	2 cut(s)	314, 346
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	195, 224
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	205, 210, 357, 361
SfaNI	GCATC	2 cut(s)	18, 328
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	153, 165, 362
SsiI	CCGC	2 cut(s)	71, 292
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	186, 355
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	3 cut(s)	153, 165, 362
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TscAI	CASTG	2 cut(s)	148, 316
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspRI	CASTG	2 cut(s)	148, 316
XapI	RAATTY	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.