pycom12419g00310

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012419
OG0000945
Physical Location & Seq
Reverse (-)
687129 .. 688226
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12419g00310.4

Sequence Viewer

Length: 660 bp
ATGGGTGAAAACATTGCCACAAGGAACCAGCTGCAGCTTCACCACAGCCCAGCTTTTGATGTCTCACTCGATGTGCAAGGAGGCTCCAAAATCGTCGATGAAGATGGCCGCCCCAAAAGAACCGGAACTCTCTGGACGGCAAGTTCACACATAATTACTGCTGTGATTGGGTCTGGAGTTCTGTCCTTGACTTGGGCCATAGCTCAGCTTGGATGGATTGCTGGTCCTGTTGTGATGGTCATGTTCTCCTTCATCACGTACTACGCTTCAACTCTTCTTGTTTCCTGCTATCGTGATCCCGTCACTGGAAAGAGAAGCCGCACTTACTCGGATGCTGTTCGATCCCACCTTGGTGAATTTTGCCTAATACTTTTTATTTTTTTTGACATAAGAAATAAGGATTTTTTTTTTTTTTTTCCAAAGGTATATAACCCAAATTTTTTTTTTTTTTTTTGTGTTAATTTGAATTTCTCAGGTAAAGTTCAGGTCAAAATGTGTGGATTTATTCAGCAATTGAACCTTTTTGGTACTACTATTGGCTATACTGTAACAGCAGCTATAAGCATGGTGGCAATAAAAAGGTCTACTTGCTTCCACAATAGTGGTGGAAAAGATCCATGCCTTACCAGCAGCAATCCTTATATGCTGGAATTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

220

Amino Acids

24.46

Weight (kDa)

8.75

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 584
AciI CCGC 2 cut(s) 109, 319
AclWI GGATC 3 cut(s) 290, 336, 608
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 3 cut(s) 356, 436, 466
AfaI GTAC 2 cut(s) 260, 529
AfiI CCNNNNNNNGG 2 cut(s) 192, 305
AgsI TTSAA 3 cut(s) 270, 466, 517
AleI CACNNNNGTG 2 cut(s) 351, 600
AloI GAACNNNNNNTCC 2 cut(s) 127, 159
AluBI AGCT 6 cut(s) 31, 37, 53, 203, 208, 557
AluI AGCT 6 cut(s) 31, 37, 53, 203, 208, 557
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 3 cut(s) 290, 336, 608
AoxI GGCC 2 cut(s) 106, 195
ApeKI GCWGC 4 cut(s) 31, 34, 554, 630
ApoI RAATTY 3 cut(s) 356, 436, 466
AspS9I GGNCC 2 cut(s) 195, 224
AsuHPI GGTGA 3 cut(s) 17, 32, 365
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 4 cut(s) 18, 46, 566, 642
BccI CCATC 3 cut(s) 98, 207, 229
BceAI ACGGC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 658
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 6 cut(s) 32, 35, 109, 319, 555, 631
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 6 cut(s) 33, 36, 110, 320, 556, 632
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 195, 224
BmiI GGNNCC 2 cut(s) 26, 85
BmsI GCATC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 305
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 218, 337
BseLI CCNNNNNNNGG 2 cut(s) 192, 305
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 218, 486
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 4 cut(s) 18, 46, 566, 642
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 108, 197
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 192, 305
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 2 cut(s) 108, 197
Bsp143I GATC 3 cut(s) 295, 341, 613
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 2 cut(s) 109, 319
BspANI GGCC 2 cut(s) 108, 197
BspCNI CTCAG 2 cut(s) 217, 485
BspLI GGNNCC 2 cut(s) 26, 85
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 3 cut(s) 290, 336, 608
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 3 cut(s) 295, 341, 613
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 204, 472
BstF5I GGATG 2 cut(s) 218, 337
BstKTI GATC 3 cut(s) 298, 344, 616
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 295, 341, 613
BstMWI GCNNNNNNNGC 1 cut(s) 627
BstSFI CTRYAG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 18, 46, 566, 642
BstX2I RGATCY 1 cut(s) 613
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 613
BsuRI GGCC 2 cut(s) 108, 197
BtsCI GGATG 2 cut(s) 218, 337
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 195, 224
Csp6I GTAC 2 cut(s) 259, 528
CspCI CAANNNNNGTGG 4 cut(s) 478, 513, 586, 621
CviAII CATG 3 cut(s) 241, 565, 618
CviQI GTAC 2 cut(s) 259, 528
DdeI CTNAG 2 cut(s) 204, 472
DpnI GATC 3 cut(s) 297, 343, 615
DpnII GATC 3 cut(s) 295, 341, 613
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 3 cut(s) 244, 568, 621
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 571, 603
FatI CATG 3 cut(s) 240, 564, 617
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 6 cut(s) 32, 35, 109, 319, 555, 631
FokI GGATG 2 cut(s) 225, 344
Fsp4HI GCNGC 6 cut(s) 32, 35, 109, 319, 555, 631
FspBI CTAG 1 cut(s) 658
GluI GCNGC 6 cut(s) 32, 35, 109, 319, 555, 631
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 108, 197
HapII CCGG 1 cut(s) 123
Hin1II CATG 3 cut(s) 244, 568, 621
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 17, 32, 365
Hpy166II GTNNAC 2 cut(s) 146, 585
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 3 cut(s) 133, 174, 293
Hpy8I GTNNAC 2 cut(s) 146, 585
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 34, 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 627
HpyF3I CTNAG 2 cut(s) 204, 472
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 3 cut(s) 244, 568, 621
Kzo9I GATC 3 cut(s) 295, 341, 613
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 4 cut(s) 18, 46, 566, 642
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 658
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 301, 547
MalI GATC 3 cut(s) 297, 343, 615
MboI GATC 3 cut(s) 295, 341, 613
MboII GAAGA 2 cut(s) 113, 266
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 1 cut(s) 613
MluCI AATT 7 cut(s) 153, 356, 436, 460, 466, 512, 650
MnlI CCTC 1 cut(s) 74
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 2 cut(s) 351, 600
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 627
NdeII GATC 3 cut(s) 295, 341, 613
NlaIII CATG 3 cut(s) 244, 568, 621
NlaIV GGNNCC 2 cut(s) 26, 85
NmuCI GTSAC 1 cut(s) 301
OliI CACNNNNGTG 2 cut(s) 351, 600
PkrI GCNGC 6 cut(s) 33, 36, 110, 320, 556, 632
Ppu21I YACGTR 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 26, 85
PspPI GGNCC 2 cut(s) 195, 224
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 260, 529
RsaNI GTAC 2 cut(s) 259, 528
RseI CAYNNNNRTG 2 cut(s) 351, 600
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 6 cut(s) 32, 35, 109, 319, 555, 631
Sau3AI GATC 3 cut(s) 295, 341, 613
Sau96I GGNCC 2 cut(s) 195, 224
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 351, 600
Sse9I AATT 7 cut(s) 153, 356, 436, 460, 466, 512, 650
SsiI CCGC 2 cut(s) 109, 319
SspMI CTAG 1 cut(s) 658
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 1 cut(s) 260
TaqI TCGA 3 cut(s) 69, 96, 340
TasI AATT 7 cut(s) 153, 356, 436, 460, 466, 512, 650
TauI GCSGC 2 cut(s) 111, 321
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 4 cut(s) 31, 34, 554, 630
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 114, 241
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 3 cut(s) 356, 436, 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.