Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

32834267 .. 32836688

Gene Structure 2422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCAGCTTCCTGGAGTTATGCATCAAAAAATGAACCTGGGTTTTACCCCCCAAACAGGTCCTCAGCTTCCTCAGTTGGGCAACTTGGGGATCAGCATAGCTGCACAATACCCCCAACAGCAAGGTGGAAAGTTCGCTGGCCCTCGTAAAACTCCTGCCAAGATTACACATCCAGATACACATGAAGAGTTAAGGCTTGATAAACGGGCAGATTCATATCCAGATGGTGGCTCATCAGCCGCCAGGACTTACCCCAATGTTTCTCAATCCCAGCTCATGCCCCAGCTGAGGAGTCTGTACTCTGTACCAGTTCTTTATCCTGTAGTCAGTCAACTGCAGAAAGAAACCAGGAAAGGAAGGGAGTATTCAACCACAGCATCAGTTCCGTCTCAGAGCGGGGAACTTACAACCCGAGGATGTGTTCTAATGCCAAGAGGTATGCCTGATAGATTTGGAGTTCCAGCTACTTATGATCAGTCAAGTGCGCAAAAGCGTAATACAAATTATAATCAGTCACCACCCGCACGTTCACAGGGGGCAGCTCTAACTCAAAAAGTTCCTTCAGAAAAGTCTGAAGAACGCCTTAGAGATATGTCCTCGAGAGTAATTAAAGAATTTTACAGGTATATTCTCATACTTTGTCAACGTCAGAGATATTTTCAGGAAAGCTGTTATCGCACACGACACAGTTCCAGGCTCACCAAAACTATTTCAGCATTATGCTTTGATCCTAATGGCACGCTTTTGGTGTCTGCTTCGGTTCAGGGGCATAACATCGATGTTTTTAACATAATGTCTGGCCCTCCTGGAGTCTCCTTTTCAACTGATGCTAATGCATCTCATGTACGTCTTTACAGGCTAAAGAGCGGAATGACAAATGCAGTAAGAATCGTGTTCTTTTTTGGTCCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

305

Amino Acids

33.77

Weight (kDa)

9.95

Isoelectric Point (pI)

62.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
Acc16I	TGCGCA	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccBSI	CCGCTC	2 cut(s)	396, 867
AciI	CCGC	4 cut(s)	240, 396, 522, 867
AclWI	GGATC	2 cut(s)	98, 722
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	2 cut(s)	546, 594
AfaI	GTAC	3 cut(s)	299, 306, 846
AfiI	CCNNNNNNNGG	4 cut(s)	56, 77, 227, 288
AgsI	TTSAA	2 cut(s)	369, 822
AjnI	CCWGG	6 cut(s)	10, 36, 242, 347, 692, 805
AluBI	AGCT	8 cut(s)	7, 67, 101, 274, 286, 464, 542, 669
AluI	AGCT	8 cut(s)	7, 67, 101, 274, 286, 464, 542, 669
Alw26I	GTCTC	2 cut(s)	393, 817
AlwI	GGATC	2 cut(s)	98, 722
Ama87I	CYCGRG	2 cut(s)	411, 598
AoxI	GGCC	2 cut(s)	139, 799
ApeKI	GCWGC	3 cut(s)	4, 101, 539
ApoI	RAATTY	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	4 cut(s)	59, 140, 800, 905
AsuHPI	GGTGA	2 cut(s)	507, 691
AvaI	CYCGRG	2 cut(s)	411, 598
AvaII	GGWCC	2 cut(s)	59, 905
BbvCI	CCTCAGC	2 cut(s)	63, 287
BbvI	GCAGC	3 cut(s)	16, 88, 551
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	6 cut(s)	12, 38, 244, 349, 694, 807
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	393, 817
BfmI	CTRYAG	2 cut(s)	321, 335
BisI	GCNGC	4 cut(s)	5, 102, 240, 540
BlsI	GCNGC	4 cut(s)	6, 103, 241, 541
Bme1390I	CCNGG	6 cut(s)	12, 38, 244, 349, 694, 807
Bme18I	GGWCC	2 cut(s)	59, 905
BmeT110I	CYCGRG	2 cut(s)	411, 598
BmgT120I	GGNCC	4 cut(s)	59, 140, 800, 905
BmrFI	CCNGG	6 cut(s)	12, 38, 244, 349, 694, 807
BmsI	GCATC	4 cut(s)	31, 386, 817, 845
BpmI	CTGGAG	2 cut(s)	33, 828
Bpu10I	CCTNAGC	2 cut(s)	63, 287
Bsa29I	ATCGAT	1 cut(s)	777
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	37, 412
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 77, 227, 288
Bse1I	ACTGG	2 cut(s)	308, 908
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	6 cut(s)	12, 38, 244, 349, 694, 807
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	37, 412
BseGI	GGATG	2 cut(s)	169, 422
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	4 cut(s)	56, 77, 227, 288
BseMII	CTCAG	4 cut(s)	77, 86, 278, 404
BseNI	ACTGG	2 cut(s)	308, 908
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	16, 88, 551
BseYI	CCCAGC	2 cut(s)	270, 282
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	141, 801
BshVI	ATCGAT	1 cut(s)	777
BsiHKCI	CYCGRG	2 cut(s)	411, 598
BslI	CCNNNNNNNGG	4 cut(s)	56, 77, 227, 288
BsmAI	GTCTC	2 cut(s)	393, 817
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	141, 801
BsoBI	CYCGRG	2 cut(s)	411, 598
Bsp143I	GATC	3 cut(s)	90, 472, 727
BspACI	CCGC	4 cut(s)	240, 396, 522, 867
BspANI	GGCC	2 cut(s)	141, 801
BspCNI	CTCAG	4 cut(s)	76, 85, 279, 403
BspDI	ATCGAT	1 cut(s)	777
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	98, 722
BsrBI	CCGCTC	2 cut(s)	396, 867
BsrI	ACTGG	2 cut(s)	308, 908
BssECI	CCNNGG	2 cut(s)	37, 412
BssMI	GATC	3 cut(s)	90, 472, 727
Bst2UI	CCWGG	6 cut(s)	12, 38, 244, 349, 694, 807
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	139, 740
BstDEI	CTNAG	5 cut(s)	63, 72, 287, 390, 584
BstF5I	GGATG	2 cut(s)	169, 422
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	93, 475, 730
BstMAI	GTCTC	2 cut(s)	393, 817
BstMBI	GATC	3 cut(s)	90, 472, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	675
BstNI	CCWGG	6 cut(s)	12, 38, 244, 349, 694, 807
BstSCI	CCNGG	6 cut(s)	10, 36, 242, 347, 692, 805
BstSFI	CTRYAG	2 cut(s)	321, 335
BstV1I	GCAGC	3 cut(s)	16, 88, 551
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	2 cut(s)	141, 801
BsuTUI	ATCGAT	1 cut(s)	777
BtsCI	GGATG	2 cut(s)	169, 422
BtsIMutI	CAGTG	1 cut(s)	915
Cac8I	GCNNGC	2 cut(s)	139, 740
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	4 cut(s)	59, 140, 800, 905
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	3 cut(s)	298, 305, 845
CviAII	CATG	3 cut(s)	182, 277, 842
CviQI	GTAC	3 cut(s)	298, 305, 845
DdeI	CTNAG	5 cut(s)	63, 72, 287, 390, 584
DpnI	GATC	3 cut(s)	92, 474, 729
DpnII	GATC	3 cut(s)	90, 472, 727
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	59, 905
Eco57I	CTGAAG	2 cut(s)	546, 594
Eco88I	CYCGRG	2 cut(s)	411, 598
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	6 cut(s)	10, 36, 242, 347, 692, 805
EcoT22I	ATGCAT	2 cut(s)	24, 838
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	3 cut(s)	185, 280, 845
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	3 cut(s)	181, 276, 841
FauI	CCCGC	2 cut(s)	389, 529
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	5, 102, 240, 540
FokI	GGATG	2 cut(s)	156, 429
Fsp4HI	GCNGC	4 cut(s)	5, 102, 240, 540
FspI	TGCGCA	1 cut(s)	486
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	4 cut(s)	5, 102, 240, 540
GsaI	CCCAGC	2 cut(s)	274, 286
GsuI	CTGGAG	2 cut(s)	33, 828
HaeIII	GGCC	2 cut(s)	141, 801
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	185, 280, 845
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	2 cut(s)	332, 644
HindII	GTYRAC	2 cut(s)	332, 644
HinfI	GANTC	4 cut(s)	212, 292, 810, 888
HphI	GGTGA	2 cut(s)	507, 691
Hpy166II	GTNNAC	3 cut(s)	332, 530, 644
Hpy188I	TCNGA	4 cut(s)	393, 565, 574, 651
Hpy188III	TCNNGA	4 cut(s)	173, 221, 600, 662
Hpy8I	GTNNAC	3 cut(s)	332, 530, 644
HpyAV	CCTTC	2 cut(s)	351, 570
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	3 cut(s)	526, 646, 847
HpyCH4V	TGCA	6 cut(s)	4, 22, 104, 337, 836, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	675
HpyF3I	CTNAG	5 cut(s)	63, 72, 287, 390, 584
HpySE526I	ACGT	3 cut(s)	526, 646, 847
Hsp92II	CATG	3 cut(s)	185, 280, 845
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	90, 472, 727
Lsp1109I	GCAGC	3 cut(s)	16, 88, 551
LweI	GCATC	4 cut(s)	31, 386, 817, 845
MaeII	ACGT	3 cut(s)	526, 646, 847
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	3 cut(s)	92, 474, 729
MbiI	CCGCTC	2 cut(s)	396, 867
MboI	GATC	3 cut(s)	90, 472, 727
MboII	GAAGA	2 cut(s)	197, 587
MluCI	AATT	3 cut(s)	502, 606, 614
MlyI	GAGTC	2 cut(s)	301, 819
MnlI	CCTC	8 cut(s)	72, 81, 153, 282, 407, 428, 607, 813
Mph1103I	ATGCAT	2 cut(s)	24, 838
MseI	TTAA	3 cut(s)	191, 609, 786
MspA1I	CMGCKG	1 cut(s)	286
MspR9I	CCNGG	6 cut(s)	12, 38, 244, 349, 694, 807
MvaI	CCWGG	6 cut(s)	12, 38, 244, 349, 694, 807
MwoI	GCNNNNNNNGC	1 cut(s)	675
NdeII	GATC	3 cut(s)	90, 472, 727
NlaIII	CATG	3 cut(s)	185, 280, 845
NmuCI	GTSAC	1 cut(s)	513
NsbI	TGCGCA	1 cut(s)	486
NsiI	ATGCAT	2 cut(s)	24, 838
PaeR7I	CTCGAG	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	212, 888
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	2 cut(s)	10, 805
PkrI	GCNGC	4 cut(s)	6, 103, 241, 541
PleI	GAGTC	2 cut(s)	300, 818
PpsI	GAGTC	2 cut(s)	300, 818
PpuMI	RGGWCCY	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	6 cut(s)	10, 36, 242, 347, 692, 805
PspFI	CCCAGC	2 cut(s)	270, 282
PspGI	CCWGG	6 cut(s)	10, 36, 242, 347, 692, 805
PspPI	GGNCC	4 cut(s)	59, 140, 800, 905
PspPPI	RGGWCCY	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	299, 306, 846
RsaNI	GTAC	3 cut(s)	298, 305, 845
SaqAI	TTAA	3 cut(s)	191, 609, 786
SatI	GCNGC	4 cut(s)	5, 102, 240, 540
Sau3AI	GATC	3 cut(s)	90, 472, 727
Sau96I	GGNCC	4 cut(s)	59, 140, 800, 905
SchI	GAGTC	2 cut(s)	301, 819
ScrFI	CCNGG	6 cut(s)	12, 38, 244, 349, 694, 807
SfaNI	GCATC	4 cut(s)	31, 386, 817, 845
SfcI	CTRYAG	2 cut(s)	321, 335
Sfr274I	CTCGAG	1 cut(s)	598
SinI	GGWCC	2 cut(s)	59, 905
SlaI	CTCGAG	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	3 cut(s)	502, 606, 614
SsiI	CCGC	4 cut(s)	240, 396, 522, 867
StyD4I	CCNGG	6 cut(s)	10, 36, 242, 347, 692, 805
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	3 cut(s)	529, 649, 850
TaqI	TCGA	2 cut(s)	599, 777
TasI	AATT	3 cut(s)	502, 606, 614
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	212, 888
Tru1I	TTAA	3 cut(s)	191, 609, 786
Tru9I	TTAA	3 cut(s)	191, 609, 786
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	3 cut(s)	4, 101, 539
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	3 cut(s)	47, 198, 204
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	915
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	59, 905
XapI	RAATTY	1 cut(s)	614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	598
Zsp2I	ATGCAT	2 cut(s)	24, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.