Rmu_sc0015248.1_g000010

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015248.1
OG0000945
Physical Location & Seq
Reverse (-)
39129 .. 41291
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015248.1_g000010.1.cds

Sequence Viewer

Length: 753 bp
atgttaggacggccactattgtttctgactcgaatgctgaaacagtttgagaaggtgccatctccttctgaattacttgatgttgggattgctgtcaatacttttgctgttgttcatcataaatctacctctgtgaaaagtctggaatctgttgacaaagcagcagagcagtctgtggcaaaggaaaccactaaaggcaatgttattgcaacttctgaaactgcacaaggaggcaaagatcaacatatcaggtgcaatacagaattagatgggaggatgcctctcctagcagaagtgttccgtctcagagcggggaacttacaacccgacgatgttctaatgccaagaggtatgcctgatagatttggagttccagctacttatgatcagtcaagtgcacaaaagcgtagtacagattataaccagtcaccacccacacgttcacagggggcagctctaactcaaaagttccttcagaaaagtctgaagaacgccttagggatatgtcccttgggcataacatcgatgtttattaacataatgcctggccctcctggagtctcctcttcaactgatgctaatgcatctcatgtacgtctttacaggctacagcacggaatgacaaatgcaattattcaggacgttagtttcagtgacgacagcaactggatcttggttagttcctcgacggggaccagccatctgcttgctataaatccttggggaggaactgttgatattccaattttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

250

Amino Acids

27.08

Weight (kDa)

8.55

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 311
AciI CCGC 1 cut(s) 311
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 458, 506
AfaI GTAC 2 cut(s) 412, 594
AfiI CCNNNNNNNGG 2 cut(s) 690, 725
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 1 cut(s) 570
AjnI CCWGG 2 cut(s) 544, 553
AluBI AGCT 2 cut(s) 377, 455
AluI AGCT 2 cut(s) 377, 455
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 308, 565
Alw44I GTGCAC 1 cut(s) 396
AlwI GGATC 1 cut(s) 677
AlwNI CAGNNNCTG 1 cut(s) 666
AoxI GGCC 2 cut(s) 11, 547
ApaLI GTGCAC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 161, 452
AspS9I GGNCC 2 cut(s) 548, 693
AsuHPI GGTGA 1 cut(s) 420
AvaII GGWCC 1 cut(s) 693
AxyI CCTNAGG 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 173, 464
BccI CCATC 3 cut(s) 67, 263, 708
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 546, 555
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 308, 565
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 608
BisI GCNGC 2 cut(s) 162, 453
BlsI GCNGC 2 cut(s) 163, 454
Bme1390I CCNGG 2 cut(s) 546, 555
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 2 cut(s) 548, 693
BmiI GGNNCC 2 cut(s) 57, 694
BmrFI CCNGG 2 cut(s) 546, 555
BmsI GCATC 3 cut(s) 267, 565, 593
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 1 cut(s) 576
Bsa29I ATCGAT 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 510, 719
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 2 cut(s) 690, 725
Bse1I ACTGG 2 cut(s) 424, 671
Bse21I CCTNAGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 546, 555
BseCI ATCGAT 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 510, 719
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 690, 725
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 2 cut(s) 424, 671
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 2 cut(s) 173, 464
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 13, 549
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 400
BslFI GGGAC 2 cut(s) 492, 706
BslI CCNNNNNNNGG 2 cut(s) 690, 725
BsmAI GTCTC 2 cut(s) 308, 565
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 492, 706
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 13, 549
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 238, 385, 669
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 13, 549
BspCNI CTCAG 1 cut(s) 318
BspDI ATCGAT 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 57, 694
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 2 cut(s) 424, 671
BssECI CCNNGG 2 cut(s) 510, 719
BssMI GATC 3 cut(s) 238, 385, 669
BssT1I CCWWGG 2 cut(s) 510, 719
Bst2UI CCWGG 2 cut(s) 546, 555
Bst4CI ACNGT 2 cut(s) 45, 733
Bst6I CTCTTC 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 2 cut(s) 305, 496
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 3 cut(s) 241, 388, 672
BstMAI GTCTC 2 cut(s) 308, 565
BstMBI GATC 3 cut(s) 238, 385, 669
BstNI CCWGG 2 cut(s) 546, 555
BstSCI CCNGG 2 cut(s) 544, 553
BstSFI CTRYAG 1 cut(s) 608
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 173, 464
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 496
BsuRI GGCC 2 cut(s) 13, 549
BsuTUI ATCGAT 1 cut(s) 524
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 708
CaiI CAGNNNCTG 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 548, 693
ClaI ATCGAT 1 cut(s) 524
Csp6I GTAC 2 cut(s) 411, 593
CviAII CATG 1 cut(s) 590
CviJI RGCY 6 cut(s) 13, 377, 455, 549, 607, 699
CviKI_1 RGCY 6 cut(s) 13, 377, 455, 549, 607, 699
CviQI GTAC 2 cut(s) 411, 593
DdeI CTNAG 2 cut(s) 305, 496
DpnI GATC 3 cut(s) 240, 387, 671
DpnII GATC 3 cut(s) 238, 385, 669
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 510, 719
Eco47I GGWCC 1 cut(s) 693
Eco57I CTGAAG 2 cut(s) 458, 506
Eco81I CCTNAGG 1 cut(s) 496
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoRII CCWGG 2 cut(s) 544, 553
EcoT14I CCWWGG 2 cut(s) 510, 719
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 510, 719
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 1 cut(s) 593
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 2 cut(s) 492, 706
FatI CATG 1 cut(s) 589
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 162, 453
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 162, 453
FspBI CTAG 1 cut(s) 287
GluI GCNGC 2 cut(s) 162, 453
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 2 cut(s) 13, 549
Hin1II CATG 1 cut(s) 593
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 28, 146, 558
HphI GGTGA 1 cut(s) 420
Hpy166II GTNNAC 3 cut(s) 154, 398, 443
Hpy188I TCNGA 7 cut(s) 27, 70, 217, 308, 477, 486, 752
Hpy188III TCNNGA 2 cut(s) 143, 638
Hpy8I GTNNAC 3 cut(s) 154, 398, 443
Hpy99I CGWCG 2 cut(s) 332, 691
HpyAV CCTTC 3 cut(s) 46, 75, 482
HpyCH4III ACNGT 2 cut(s) 45, 733
HpyCH4IV ACGT 3 cut(s) 439, 595, 642
HpyCH4V TGCA 6 cut(s) 209, 224, 255, 398, 584, 629
HpyF3I CTNAG 2 cut(s) 305, 496
HpySE526I ACGT 3 cut(s) 439, 595, 642
Hsp92II CATG 1 cut(s) 593
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 238, 385, 669
Lsp1109I GCAGC 2 cut(s) 173, 464
LweI GCATC 3 cut(s) 267, 565, 593
MaeI CTAG 1 cut(s) 287
MaeII ACGT 3 cut(s) 439, 595, 642
MaeIII GTNAC 2 cut(s) 426, 653
MalI GATC 3 cut(s) 240, 387, 671
MbiI CCGCTC 1 cut(s) 311
MboI GATC 3 cut(s) 238, 385, 669
MboII GAAGA 2 cut(s) 499, 558
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 4 cut(s) 71, 263, 630, 744
MlyI GAGTC 2 cut(s) 22, 567
MnlI CCTC 9 cut(s) 139, 224, 267, 291, 341, 561, 574, 694, 719
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 1 cut(s) 534
MspR9I CCNGG 2 cut(s) 546, 555
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 546, 555
NdeII GATC 3 cut(s) 238, 385, 669
NlaIII CATG 1 cut(s) 593
NlaIV GGNNCC 2 cut(s) 57, 694
NmuCI GTSAC 2 cut(s) 426, 653
NsiI ATGCAT 1 cut(s) 586
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 2 cut(s) 163, 454
PleI GAGTC 2 cut(s) 22, 566
PpsI GAGTC 2 cut(s) 22, 566
PsiI TTATAA 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 544, 553
PspGI CCWGG 2 cut(s) 544, 553
PspN4I GGNNCC 2 cut(s) 57, 694
PspPI GGNCC 2 cut(s) 548, 693
PstNI CAGNNNCTG 1 cut(s) 666
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 2 cut(s) 412, 594
RsaNI GTAC 2 cut(s) 411, 593
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 162, 453
Sau3AI GATC 3 cut(s) 238, 385, 669
Sau96I GGNCC 2 cut(s) 548, 693
SchI GAGTC 2 cut(s) 22, 567
ScrFI CCNGG 2 cut(s) 546, 555
SduI GDGCHC 1 cut(s) 400
SetI ASST 9 cut(s) 57, 131, 254, 352, 379, 442, 457, 598, 645
SfaNI GCATC 3 cut(s) 267, 565, 593
SfcI CTRYAG 1 cut(s) 608
SinI GGWCC 1 cut(s) 693
Sse9I AATT 4 cut(s) 71, 263, 630, 744
SsiI CCGC 1 cut(s) 311
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 544, 553
StyI CCWWGG 2 cut(s) 510, 719
TaaI ACNGT 2 cut(s) 45, 733
TaiI ACGT 3 cut(s) 442, 598, 645
TaqI TCGA 3 cut(s) 31, 524, 686
TasI AATT 4 cut(s) 71, 263, 630, 744
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 2 cut(s) 426, 653
TseI GCWGC 2 cut(s) 161, 452
Tsp45I GTSAC 2 cut(s) 426, 653
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 2 cut(s) 290, 630
TspRI CASTG 1 cut(s) 658
VneI GTGCAC 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 693
XagI CCTNNNNNAGG 1 cut(s) 723
XspI CTAG 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.