Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Reverse (-)

23780324 .. 23784505

Gene Structure 4182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCATGGCTACCTTGGATGGTGCGGAAGCCGGTTTATTTTCTGGGGAGGCAATGGAACGGTGTCGACATAGTTAGTGTTTTCACCCTTGGTGCTATACATCTTCTTGCTCTTCTGGCGCCATTTCATTTCACATGGTCTGCGTTTTGGTTGGGCGTAGCACTCTACTATGTCACTGGTGTGGGGGTAACTTTATCTTTTCATAGAAATCTCGCCCACGGAAGCTTCAAGCTTCCCAAATGGCTCGAATACTTCTTCGCCTATTGCGCCGTTCATTCGCTTCAGGGAAGTCCACTAGAATGGGTTAGCTCACACAGGAGTCACCACCAGTTTGTGGACACGCCGAATGACCCTCATACCCCTCTTAAGGGTTTCTGGTTTAGTCACATTGGTTGGATCTTTGATTATCGTAAACGTTTTGGAAGTTATGATGGAAAACTATACAATGTTGGAGATTTGAAAAAACAGACATATTATAAGTTTCTTCACTACACGCACCCTTATCATTCTATTGCTTGTGGAGTTGTACTCTATCGCATAGGAGGAATGCCCTATTTAGTTTGGGCACTGGCTGTGAGAACGATATTTTTTCTCCATGTAACTTTTTCAATAAATTCGGTTTGCCACATATGGGGAAACCAAGTATGGGATACTGGTGATTTGTCCAAAAACAACTGGTTATGCGGATTGCTAGCTCATGGAGAAGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTCGACAAGGTTTTGAATGGTGGCAAATTGATATTACTTGGTATCTGATAAGGTTTCTTGAGATTGTTGGTTTGGCAACGGATGTTAAGCTCCCGACTGAGCTTCAGAAGAACCGAAAAGCTTTGTCAAACAAAATCAGTAGCATGGAGCAGGAGGGAAGGTTTGAAACAAAAGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

307

Amino Acids

35.88

Weight (kDa)

9.22

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	45 - 261	1.7e-16	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	2 cut(s)	25, 684
AclI	AACGTT	1 cut(s)	415
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	2 cut(s)	266, 830
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	528, 737
AfiI	CCNNNNNNNGG	5 cut(s)	334, 367, 368, 631, 646
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	229, 460, 609, 758, 908
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	8 cut(s)	225, 232, 309, 695, 743, 832, 844, 863
AluI	AGCT	8 cut(s)	225, 232, 309, 695, 743, 832, 844, 863
AlwI	GGATC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	2 cut(s)	121, 269
AsuHPI	GGTGA	3 cut(s)	76, 314, 668
AsuNHI	GCTAGC	1 cut(s)	691
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	118
BccI	CCATC	2 cut(s)	13, 425
BceAI	ACGGC	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	296, 692
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	695
BplI	GAGNNNNNCTC	2 cut(s)	513, 545
BpuEI	CTTGAG	1 cut(s)	821
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	14, 88, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bsc4I	CCNNNNNNNGG	5 cut(s)	334, 367, 368, 631, 646
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	5 cut(s)	181, 328, 573, 658, 680
Bse3DI	GCAATG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	14, 88, 217
BseGI	GGATG	2 cut(s)	24, 829
BseLI	CCNNNNNNNGG	5 cut(s)	334, 367, 368, 631, 646
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	753, 831
BseNI	ACTGG	5 cut(s)	181, 328, 573, 658, 680
BseSI	GKGCMC	1 cut(s)	568
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	5 cut(s)	334, 367, 368, 631, 646
BsmI	GAATGC	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	2 cut(s)	25, 684
BspCNI	CTCAG	2 cut(s)	752, 832
BspLI	GGNNCC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	695
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	5 cut(s)	181, 328, 573, 658, 680
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	14, 88, 217
BssMI	GATC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	14, 88
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	739, 840
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	24, 829
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 269
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 266
BstSLI	GKGCMC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	643
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	24, 829
BtsIMutI	CAGTG	2 cut(s)	174, 566
Cac8I	GCNNGC	1 cut(s)	693
CfoI	GCGC	2 cut(s)	121, 269
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	527, 736
CviAII	CATG	6 cut(s)	6, 135, 596, 698, 725, 886
CviQI	GTAC	2 cut(s)	527, 736
DdeI	CTNAG	2 cut(s)	739, 840
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	14, 88
Eco57I	CTGAAG	2 cut(s)	266, 830
EcoT14I	CCWWGG	2 cut(s)	14, 88
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	14, 88
FaeI	CATG	6 cut(s)	9, 138, 599, 701, 728, 889
FatI	CATG	6 cut(s)	5, 134, 595, 697, 724, 885
FauNDI	CATATG	1 cut(s)	629
FblI	GTMKAC	1 cut(s)	66
FokI	GGATG	2 cut(s)	31, 836
FspBI	CTAG	2 cut(s)	296, 692
GlaI	GCGC	2 cut(s)	120, 268
HaeII	RGCGCY	1 cut(s)	122
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	2 cut(s)	121, 269
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	6 cut(s)	9, 138, 599, 701, 728, 889
Hin6I	GCGC	2 cut(s)	119, 267
HinP1I	GCGC	2 cut(s)	119, 267
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	3 cut(s)	223, 230, 861
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	76, 314, 668
Hpy166II	GTNNAC	4 cut(s)	67, 293, 337, 413
Hpy188I	TCNGA	2 cut(s)	789, 849
Hpy188III	TCNNGA	2 cut(s)	800, 835
Hpy8I	GTNNAC	4 cut(s)	67, 293, 337, 413
HpyAV	CCTTC	2 cut(s)	698, 894
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 266
HpyF3I	CTNAG	2 cut(s)	739, 840
HpySE526I	ACGT	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	6 cut(s)	9, 138, 599, 701, 728, 889
HspAI	GCGC	2 cut(s)	119, 267
KasI	GGCGCC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	396
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	837, 889
MaeI	CTAG	2 cut(s)	296, 692
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	5 cut(s)	172, 187, 320, 383, 598
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	5 cut(s)	95, 104, 247, 476, 862
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	2 cut(s)	613, 768
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	2 cut(s)	374, 430
MnlI	CCTC	5 cut(s)	42, 363, 372, 536, 889
MseI	TTAA	2 cut(s)	366, 828
MslI	CAYNNNNRTG	2 cut(s)	179, 298
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	116, 266
NarI	GGCGCC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	1 cut(s)	396
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	6 cut(s)	9, 138, 599, 701, 728, 889
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	3 cut(s)	172, 320, 383
OliI	CACNNNNGTG	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	334
PleI	GAGTC	1 cut(s)	327
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	396
RsaI	GTAC	2 cut(s)	528, 737
RsaNI	GTAC	2 cut(s)	527, 736
RseI	CAYNNNNRTG	2 cut(s)	179, 298
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	366, 828
Sau3AI	GATC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	568
SfoI	GGCGCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	179, 298
SmlI	CTYRAG	2 cut(s)	365, 800
SmoI	CTYRAG	2 cut(s)	365, 800
Sse9I	AATT	2 cut(s)	613, 768
SsiI	CCGC	2 cut(s)	25, 684
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	296, 692
StyI	CCWWGG	2 cut(s)	14, 88
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	66, 246, 745
TasI	AATT	2 cut(s)	613, 768
TatI	WGTACW	2 cut(s)	526, 735
Tru1I	TTAA	2 cut(s)	366, 828
Tru9I	TTAA	2 cut(s)	366, 828
TscAI	CASTG	2 cut(s)	181, 573
TseFI	GTSAC	3 cut(s)	172, 320, 383
Tsp45I	GTSAC	3 cut(s)	172, 320, 383
TspDTI	ATGAA	3 cut(s)	116, 191, 263
TspGWI	ACGGA	2 cut(s)	234, 836
TspRI	CASTG	2 cut(s)	181, 573
Van91I	CCANNNNNTGG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	365
XapI	RAATTY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	2 cut(s)	296, 692
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.