Rh1DG379400

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
60123003 .. 60125488
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG379400.1

Sequence Viewer

Length: 831 bp
ATGTTAATGCTGGTAGACTGCTCCAACTGCCTCACACCTCTCCAGCTGCCAGCTGGCGCTCAGGTAATCCGCTGCGGCTTATGCAACGCCGTCACGCGCATCGCCGGAACCTCCTCCTCCCGATCTCAACTTCCTCCTCATCCGCAATCCCCCCACGCGCCGCCGTCGCCGTACAGGCACGCGCCGCGGGGGGCGCCGCCGTCGGCCCACGGACGGAAGAGGGCGGTGCTATGCGCCGTGTCGTACAAGGGAACGCGACACGAGCTCAAGGGCTGCATTAACGACGCCAAGTGTATGAAGTATTTGCTGGTCAACAAGTTCAAGTTTCCGGAGTCTTCCATTGTCATGCTCACAGAAGAAGAAGCTGATCCTTTTCGATGGCCAACCAAACAAAACATGAGAATGGCGCTGTTTTGGCTTGTGCAAGGTTGTCAAGCAGGGGATTCTTTGGTGTTTCATTATTCGGGGCATGGATCACAGCAGCGGAACTACACTGGAGACGAGGTGGATGGATATGATGAGACACTGTGCCCCACGGATTATGAGACTCAGGGGATGATCGTGGATGATGAGATCAATGCAACAATTGTTAGACCTCTTCCTGCTGGAGTTAAACTTCATGCTATTGTAGATGCTTGCCATAGTGGTACTGTGCTAGATTTGCCATTTCTCTGTAGAATGGACAGAAATGGGAGGTACATATGGGAGGACCATCGTCCTCGATCAGGTGTTTGGAAGGGAACAAGTGGTGGTGAGGCCATTTCCTTCAGTGGCTGTGACGATGATCAGACCTCTGCTGATACCTCAGTAAGTAGTGGACAAAAGCTTTGA

Protein Analysis

276

Amino Acids

30.27

Weight (kDa)

6.78

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LSD1 PF06943 7 - 31 4.3e-07 LSD1 zinc finger
Peptidase_C14 PF00656 73 - 271 8.8e-30 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 15
AccII CGCG 5 cut(s) 97, 158, 182, 187, 256
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 9 cut(s) 70, 75, 143, 161, 185, 187, 197, 224, 484
AclWI GGATC 2 cut(s) 362, 481
AcoI YGGCCR 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 751
AcyI GRCGYC 2 cut(s) 194, 285
AfaI GTAC 4 cut(s) 173, 245, 649, 698
AfiI CCNNNNNNNGG 2 cut(s) 213, 725
AgsI TTSAA 1 cut(s) 322
AluBI AGCT 5 cut(s) 46, 53, 265, 365, 826
AluI AGCT 5 cut(s) 46, 53, 265, 365, 826
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 492, 515, 539
AlwI GGATC 2 cut(s) 362, 481
AlwNI CAGNNNCTG 1 cut(s) 774
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 3 cut(s) 204, 380, 756
ApeKI GCWGC 4 cut(s) 46, 72, 273, 481
ArsI GACNNNNNNTTYG 1 cut(s) 810
AspLEI GCGC 7 cut(s) 59, 99, 160, 184, 196, 236, 409
AspS9I GGNCC 2 cut(s) 205, 709
AsuHPI GGTGA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 709
BaeGI GKGCMC 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BalI TGGCCA 1 cut(s) 382
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 33, 59, 260, 493
BccI CCATC 3 cut(s) 372, 503, 720
BceAI ACGGC 5 cut(s) 74, 148, 154, 184, 221
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 3 cut(s) 492, 515, 539
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 673
BfoI RGCGCY 3 cut(s) 60, 197, 410
BglI GCCNNNNNGGC 1 cut(s) 175
BisI GCNGC 8 cut(s) 47, 73, 76, 161, 185, 197, 274, 482
BlsI GCNGC 8 cut(s) 48, 74, 77, 162, 186, 198, 275, 483
Bme18I GGWCC 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 205, 709
BmiI GGNNCC 2 cut(s) 109, 195
BmsI GCATC 2 cut(s) 108, 622
BoxI GACNNNNGTC 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 3 cut(s) 26, 516, 627
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 2 cut(s) 194, 285
BsaJI CCNNGG 3 cut(s) 185, 208, 534
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 725
Bse1I ACTGG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 328
BseDI CCNNGG 3 cut(s) 185, 208, 534
BseGI GGATG 4 cut(s) 139, 514, 561, 571
BseLI CCNNNNNNNGG 2 cut(s) 213, 725
BseMII CTCAG 3 cut(s) 74, 563, 819
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 3 cut(s) 103, 106, 126
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 4 cut(s) 33, 59, 260, 493
Bsh1236I CGCG 5 cut(s) 97, 158, 182, 187, 256
BshFI GGCC 3 cut(s) 206, 382, 758
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 2 cut(s) 105, 329
BslI CCNNNNNNNGG 2 cut(s) 213, 725
BsmAI GTCTC 3 cut(s) 492, 515, 539
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 3 cut(s) 206, 382, 758
Bsp1286I GDGCHC 2 cut(s) 267, 533
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
BspACI CCGC 9 cut(s) 70, 75, 143, 161, 185, 187, 197, 224, 484
BspANI GGCC 3 cut(s) 206, 382, 758
BspCNI CTCAG 3 cut(s) 73, 562, 818
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 5 cut(s) 97, 158, 182, 187, 256
BspLI GGNNCC 2 cut(s) 109, 195
BspPI GGATC 2 cut(s) 362, 481
BspT107I GGYRCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 3 cut(s) 185, 208, 534
BssMI GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
BssNI GRCGYC 2 cut(s) 194, 285
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 528, 652
Bst6I CTCTTC 2 cut(s) 212, 603
BstACI GRCGYC 2 cut(s) 194, 285
BstC8I GCNNGC 4 cut(s) 51, 55, 180, 637
BstDEI CTNAG 3 cut(s) 60, 549, 805
BstDSI CCRYGG 3 cut(s) 185, 208, 534
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 4 cut(s) 139, 514, 561, 571
BstFNI CGCG 5 cut(s) 97, 158, 182, 187, 256
BstH2I RGCGCY 3 cut(s) 60, 197, 410
BstHHI GCGC 7 cut(s) 59, 99, 160, 184, 196, 236, 409
BstKTI GATC 7 cut(s) 125, 370, 476, 561, 576, 725, 787
BstMAI GTCTC 3 cut(s) 492, 515, 539
BstMBI GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
BstMWI GCNNNNNNNGC 9 cut(s) 27, 81, 166, 175, 184, 193, 262, 415, 661
BstPAI GACNNNNGTC 1 cut(s) 714
BstSFI CTRYAG 1 cut(s) 673
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 5 cut(s) 97, 158, 182, 187, 256
BstV1I GCAGC 4 cut(s) 33, 59, 260, 493
BstV2I GAAGAC 1 cut(s) 327
BsuRI GGCC 3 cut(s) 206, 382, 758
BtgI CCRYGG 3 cut(s) 185, 208, 534
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 139, 514, 561, 571
BtsIMutI CAGTG 3 cut(s) 492, 524, 775
Cac8I GCNNGC 4 cut(s) 51, 55, 180, 637
CaiI CAGNNNCTG 1 cut(s) 774
CfoI GCGC 7 cut(s) 59, 99, 160, 184, 196, 236, 409
Cfr13I GGNCC 2 cut(s) 205, 709
Cfr42I CCGCGG 1 cut(s) 188
CseI GACGC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 172, 244, 648, 697
CviAII CATG 4 cut(s) 346, 397, 470, 620
CviQI GTAC 4 cut(s) 172, 244, 648, 697
DdeI CTNAG 3 cut(s) 60, 549, 805
DinI GGCGCC 1 cut(s) 195
DpnI GATC 7 cut(s) 124, 369, 475, 560, 575, 724, 786
DpnII GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 212, 603
EarI CTCTTC 2 cut(s) 212, 603
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 709
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 751
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 4 cut(s) 349, 400, 473, 623
FatI CATG 4 cut(s) 345, 396, 469, 619
FauI CCCGC 1 cut(s) 180
FauNDI CATATG 1 cut(s) 701
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 8 cut(s) 47, 73, 76, 161, 185, 197, 274, 482
FokI GGATG 4 cut(s) 126, 521, 568, 578
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 8 cut(s) 47, 73, 76, 161, 185, 197, 274, 482
FspBI CTAG 1 cut(s) 656
GlaI GCGC 7 cut(s) 58, 98, 159, 183, 195, 235, 408
GluI GCNGC 8 cut(s) 47, 73, 76, 161, 185, 197, 274, 482
GsuI CTGGAG 3 cut(s) 26, 516, 627
HaeII RGCGCY 3 cut(s) 60, 197, 410
HaeIII GGCC 3 cut(s) 206, 382, 758
HapII CCGG 2 cut(s) 105, 329
HgaI GACGC 1 cut(s) 293
HhaI GCGC 7 cut(s) 59, 99, 160, 184, 196, 236, 409
Hin1I GRCGYC 2 cut(s) 194, 285
Hin1II CATG 4 cut(s) 349, 400, 473, 623
Hin6I GCGC 7 cut(s) 57, 97, 158, 182, 194, 234, 407
HinP1I GCGC 7 cut(s) 57, 97, 158, 182, 194, 234, 407
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 3 cut(s) 332, 443, 547
HpaII CCGG 2 cut(s) 105, 329
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 3 cut(s) 16, 313, 818
Hpy188I TCNGA 1 cut(s) 789
Hpy188III TCNNGA 2 cut(s) 120, 329
Hpy8I GTNNAC 3 cut(s) 16, 313, 818
Hpy99I CGWCG 3 cut(s) 169, 205, 287
HpyAV CCTTC 2 cut(s) 730, 775
HpyCH4III ACNGT 2 cut(s) 528, 652
HpyCH4V TGCA 4 cut(s) 84, 276, 424, 581
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 81, 166, 175, 184, 193, 262, 415, 661
HpyF3I CTNAG 3 cut(s) 60, 549, 805
Hsp92I GRCGYC 2 cut(s) 194, 285
Hsp92II CATG 4 cut(s) 349, 400, 473, 623
HspAI GCGC 7 cut(s) 57, 97, 158, 182, 194, 234, 407
KasI GGCGCC 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 784
KspI CCGCGG 1 cut(s) 188
Kzo9I GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 4 cut(s) 33, 59, 260, 493
LweI GCATC 2 cut(s) 108, 622
MaeI CTAG 1 cut(s) 656
MaeIII GTNAC 2 cut(s) 91, 776
MalI GATC 7 cut(s) 124, 369, 475, 560, 575, 724, 786
MboI GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
MboII GAAGA 5 cut(s) 229, 327, 368, 371, 590
MfeI CAATTG 1 cut(s) 585
MhlI GDGCHC 2 cut(s) 267, 533
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 1 cut(s) 585
MluNI TGGCCA 1 cut(s) 382
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 2 cut(s) 341, 541
MmeI TCCRAC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 382
MroI TCCGGA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 382
MseI TTAA 3 cut(s) 5, 279, 612
MslI CAYNNNNRTG 2 cut(s) 344, 401
Msp20I TGGCCA 1 cut(s) 382
MspA1I CMGCKG 5 cut(s) 46, 53, 72, 187, 484
MspI CCGG 2 cut(s) 105, 329
MunI CAATTG 1 cut(s) 585
MvnI CGCG 5 cut(s) 97, 158, 182, 187, 256
MwoI GCNNNNNNNGC 9 cut(s) 27, 81, 166, 175, 184, 193, 262, 415, 661
NarI GGCGCC 1 cut(s) 194
NdeI CATATG 1 cut(s) 701
NdeII GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
NlaIII CATG 4 cut(s) 349, 400, 473, 623
NlaIV GGNNCC 2 cut(s) 109, 195
NmuCI GTSAC 2 cut(s) 91, 776
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 8 cut(s) 48, 74, 77, 162, 186, 198, 275, 483
PleI GAGTC 2 cut(s) 340, 541
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 2 cut(s) 340, 541
PshAI GACNNNNGTC 1 cut(s) 714
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 109, 195
PspPI GGNCC 2 cut(s) 205, 709
PstNI CAGNNNCTG 1 cut(s) 774
PvuII CAGCTG 2 cut(s) 46, 53
RsaI GTAC 4 cut(s) 173, 245, 649, 698
RsaNI GTAC 4 cut(s) 172, 244, 648, 697
RseI CAYNNNNRTG 2 cut(s) 344, 401
SacI GAGCTC 1 cut(s) 267
SacII CCGCGG 1 cut(s) 188
SaqAI TTAA 3 cut(s) 5, 279, 612
SatI GCNGC 8 cut(s) 47, 73, 76, 161, 185, 197, 274, 482
Sau3AI GATC 7 cut(s) 122, 367, 473, 558, 573, 722, 784
Sau96I GGNCC 2 cut(s) 205, 709
SchI GAGTC 2 cut(s) 341, 541
SduI GDGCHC 2 cut(s) 267, 533
SfaNI GCATC 2 cut(s) 108, 622
SfcI CTRYAG 1 cut(s) 673
SfoI GGCGCC 1 cut(s) 195
Sfr303I CCGCGG 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 188
SinI GGWCC 1 cut(s) 709
SmiMI CAYNNNNRTG 2 cut(s) 344, 401
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 585
SsiI CCGC 9 cut(s) 70, 75, 143, 161, 185, 187, 197, 224, 484
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 1 cut(s) 656
SstI GAGCTC 1 cut(s) 267
TaaI ACNGT 2 cut(s) 528, 652
TaqI TCGA 2 cut(s) 376, 721
TasI AATT 1 cut(s) 585
TauI GCSGC 4 cut(s) 78, 163, 187, 199
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 3 cut(s) 5, 279, 612
Tru9I TTAA 3 cut(s) 5, 279, 612
TscAI CASTG 3 cut(s) 499, 531, 775
TseFI GTSAC 2 cut(s) 91, 776
TseI GCWGC 4 cut(s) 46, 72, 273, 481
Tsp45I GTSAC 2 cut(s) 91, 776
TspDTI ATGAA 3 cut(s) 311, 446, 608
TspGWI ACGGA 3 cut(s) 225, 229, 551
TspRI CASTG 3 cut(s) 499, 531, 775
VpaK11BI GGWCC 1 cut(s) 709
XagI CCTNNNNNAGG 1 cut(s) 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.