Rmu_co8105290.1_g000001

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8105290.1
OG0000588
Physical Location & Seq
Reverse (-)
62 .. 478
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8105290.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
atgatgatgagcaattatggaggacaacgactactagtggtcgactgttgctattgccagacccaaatcccgctgccttctgtgagtctgatatctgtccgctgcggccgctgctatgccagtacccgcgtcgcctctccgggcttcccccgctccccctatagtgctgtaccctactatgtccttataaacccaccaccacaagcctgcttccccgacagatcaccaggacctccgccgaacgtgcacaggcagaagaaggctgtgatctgcggcatttcgtatagatactcgagccatgagctcaagggttccatcaatgacgccatacgcatgaggcatctcctcatcagcaagttcaagtttccagaagattccattgtcatgctcactggtatggatcgatcatgttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

9.36

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 129
AciI CCGC 8 cut(s) 71, 100, 105, 109, 127, 151, 236, 273
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 124, 171
AgsI TTSAA 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 249, 306
Alw44I GTGCAC 1 cut(s) 245
AlwI GGATC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 1 cut(s) 106
ApaLI GTGCAC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 73, 102, 111
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 249, 306
BbvI GCAGC 3 cut(s) 60, 89, 98
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 6 cut(s) 74, 103, 106, 109, 112, 274
BlsI GCNGC 6 cut(s) 75, 104, 107, 110, 113, 275
Bme1390I CCNGG 2 cut(s) 141, 228
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 141, 228
BmsI GCATC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 120, 397
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 403
BseNI ACTGG 2 cut(s) 120, 397
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 249
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 60, 89, 98
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 403
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 249, 306
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 249, 306
Bsp143I GATC 4 cut(s) 221, 267, 400, 404
BspACI CCGC 8 cut(s) 71, 100, 105, 109, 127, 151, 236, 273
BspANI GGCC 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 403
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 120, 397
BssMI GATC 4 cut(s) 221, 267, 400, 404
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 208
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 4 cut(s) 224, 270, 403, 407
BstMBI GATC 4 cut(s) 221, 267, 400, 404
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 139, 226
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 60, 89, 98
BstZI CGGCCG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 403
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 413
CciNI GCGGCCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 403
CseI GACGC 2 cut(s) 118, 332
Csp6I GTAC 2 cut(s) 123, 170
CviAII CATG 5 cut(s) 299, 334, 385, 408, 414
CviJI RGCY 6 cut(s) 108, 144, 206, 263, 297, 304
CviKI_1 RGCY 6 cut(s) 108, 144, 206, 263, 297, 304
CviQI GTAC 2 cut(s) 123, 170
DpnI GATC 4 cut(s) 223, 269, 402, 406
DpnII GATC 4 cut(s) 221, 267, 400, 404
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 306
Eco32I GATATC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 226
EcoRV GATATC 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 5 cut(s) 302, 337, 388, 411, 417
FatI CATG 5 cut(s) 298, 333, 384, 407, 413
FauI CCCGC 3 cut(s) 78, 134, 158
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 6 cut(s) 74, 103, 106, 109, 112, 274
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 6 cut(s) 74, 103, 106, 109, 112, 274
FspBI CTAG 1 cut(s) 35
GluI GCNGC 6 cut(s) 74, 103, 106, 109, 112, 274
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 140
HgaI GACGC 2 cut(s) 118, 332
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 5 cut(s) 302, 337, 388, 411, 417
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 85, 374
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 43, 247
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 368, 414
Hpy8I GTNNAC 2 cut(s) 43, 247
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 87, 253
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 5 cut(s) 302, 337, 388, 411, 417
Kzo9I GATC 4 cut(s) 221, 267, 400, 404
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 9 cut(s) 71, 133, 153, 213, 220, 235, 240, 378, 381
Lsp1109I GCAGC 3 cut(s) 60, 89, 98
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 243
MalI GATC 4 cut(s) 223, 269, 402, 406
MbiI CCGCTC 1 cut(s) 153
MboI GATC 4 cut(s) 221, 267, 400, 404
MboII GAAGA 2 cut(s) 268, 383
MhlI GDGCHC 2 cut(s) 249, 306
MluCI AATT 1 cut(s) 13
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 5 cut(s) 14, 145, 243, 330, 356
MslI CAYNNNNRTG 4 cut(s) 332, 383, 395, 412
MspA1I CMGCKG 3 cut(s) 73, 102, 111
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 141, 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
NciI CCSGG 1 cut(s) 141
NdeII GATC 4 cut(s) 221, 267, 400, 404
NlaIII CATG 5 cut(s) 302, 337, 388, 411, 417
NlaIV GGNNCC 1 cut(s) 313
NotI GCGGCCGC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 292
PagI TCATGA 1 cut(s) 413
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 6 cut(s) 75, 104, 107, 110, 113, 275
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 230
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 2 cut(s) 124, 171
RsaNI GTAC 2 cut(s) 123, 170
RseI CAYNNNNRTG 4 cut(s) 332, 383, 395, 412
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 6 cut(s) 74, 103, 106, 109, 112, 274
Sau3AI GATC 4 cut(s) 221, 267, 400, 404
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 141, 228
SduI GDGCHC 2 cut(s) 249, 306
SetI ASST 3 cut(s) 235, 246, 306
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 4 cut(s) 332, 383, 395, 412
SmlI CTYRAG 2 cut(s) 292, 305
SmoI CTYRAG 2 cut(s) 292, 305
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 1 cut(s) 13
SsiI CCGC 8 cut(s) 71, 100, 105, 109, 127, 151, 236, 273
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 139, 226
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 42, 293, 403
TasI AATT 1 cut(s) 13
TauI GCSGC 3 cut(s) 108, 111, 276
TfiI GAWTC 1 cut(s) 374
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 73, 102, 111
TspDTI ATGAA 1 cut(s) 402
TspRI CASTG 1 cut(s) 397
VneI GTGCAC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.