Rroxscaffold_4G00309590

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000588
Physical Location & Seq
Forward (+)
31371377 .. 31371793
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309590.1

Sequence Viewer

Length: 417 bp
ATGATGATGAGCAATTATGGACGCCAACCACAACTAGTGGTCGACTGTTGCTATTGCCAGACCCAAATCCCGCTGCCTTCTGTGATTCCGATATCCGTCCGCTGCGGCCGCTGCTATGCCAGTACCCGCGTAGCCTCTCCGGGCTTCCCCCGCTCCCCCTATAGTGCTGTACCCTACTATGTCCGTATAAACCCACCACCACAAGCCTGCTTCCCCCACAGATCACCAGGACCTCCGCCGAACGAGCACAGGCGGAAGAAGGCGGTGATCTGCGGGATATCGTATCGCTACACGAGGGCTGAGCTCAACGGTTGCATCAATGACGCCAAACGCATGCGGAGTCTCCTCATCAGGAAGTTCAATTTTCCAGAAGATTCCATTGTCATGCTCACTGGTATGGATCGATCATGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

138

Amino Acids

15.6

Weight (kDa)

9.64

Isoelectric Point (pI)

61.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 129
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 106
AcyI GRCGYC 2 cut(s) 22, 324
AfaI GTAC 2 cut(s) 124, 171
AgsI TTSAA 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 249, 306
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 408
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 73, 102, 111
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 216, 277
AvaII GGWCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 249, 306
BbvI GCAGC 3 cut(s) 60, 89, 98
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 5 cut(s) 74, 103, 106, 109, 112
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 5 cut(s) 75, 104, 107, 110, 113
Bme1390I CCNGG 2 cut(s) 141, 228
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 141, 228
BmsI GCATC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 403
BsaHI GRCGYC 2 cut(s) 22, 324
Bse1I ACTGG 2 cut(s) 120, 397
BseBI CCWGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 403
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 120, 397
BseRI GAGGAG 1 cut(s) 335
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 60, 89, 98
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 403
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 249, 306
BsiSI CCGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 249, 306
Bsp143I GATC 4 cut(s) 221, 267, 400, 404
Bsp1720I GCTNAGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 403
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 413
BspPI GGATC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 153
BsrI ACTGG 2 cut(s) 120, 397
BssMI GATC 4 cut(s) 221, 267, 400, 404
BssNI GRCGYC 2 cut(s) 22, 324
BssSI CACGAG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 47, 311
BstACI GRCGYC 2 cut(s) 22, 324
BstC8I GCNNGC 2 cut(s) 208, 335
BstDEI CTNAG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 4 cut(s) 224, 270, 403, 407
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 4 cut(s) 221, 267, 400, 404
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 139, 226
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 60, 89, 98
BstZI CGGCCG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 403
BsuRI GGCC 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 208, 335
CciI TCATGA 1 cut(s) 413
CciNI GCGGCCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 403
CseI GACGC 2 cut(s) 30, 332
Csp6I GTAC 2 cut(s) 123, 170
CviAII CATG 4 cut(s) 334, 385, 408, 414
CviJI RGCY 6 cut(s) 108, 134, 144, 206, 299, 304
CviKI_1 RGCY 6 cut(s) 108, 134, 144, 206, 299, 304
CviQI GTAC 2 cut(s) 123, 170
DdeI CTNAG 1 cut(s) 300
DpnI GATC 4 cut(s) 223, 269, 402, 406
DpnII GATC 4 cut(s) 221, 267, 400, 404
EaeI YGGCCR 1 cut(s) 106
EagI CGGCCG 1 cut(s) 106
EciI GGCGGA 2 cut(s) 225, 268
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 306
Eco32I GATATC 2 cut(s) 93, 279
Eco47I GGWCC 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 226
EcoRV GATATC 2 cut(s) 93, 279
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 4 cut(s) 337, 388, 411, 417
FatI CATG 4 cut(s) 333, 384, 407, 413
FauI CCCGC 4 cut(s) 78, 134, 158, 266
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 74, 103, 106, 109, 112
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 74, 103, 106, 109, 112
FspBI CTAG 1 cut(s) 35
GluI GCNGC 5 cut(s) 74, 103, 106, 109, 112
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 140
HgaI GACGC 2 cut(s) 30, 332
Hin1I GRCGYC 2 cut(s) 22, 324
Hin1II CATG 4 cut(s) 337, 388, 411, 417
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 85, 340, 374
HpaII CCGG 1 cut(s) 140
HphI GGTGA 2 cut(s) 216, 277
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 352, 368, 414
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 87, 253
HpyCH4III ACNGT 2 cut(s) 47, 311
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 22, 324
Hsp92II CATG 4 cut(s) 337, 388, 411, 417
Kzo9I GATC 4 cut(s) 221, 267, 400, 404
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 60, 89, 98
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 35
MalI GATC 4 cut(s) 223, 269, 402, 406
MbiI CCGCTC 1 cut(s) 153
MboI GATC 4 cut(s) 221, 267, 400, 404
MboII GAAGA 2 cut(s) 268, 383
MhlI GDGCHC 2 cut(s) 249, 306
MluCI AATT 2 cut(s) 13, 361
MlyI GAGTC 1 cut(s) 349
MnlI CCTC 4 cut(s) 145, 243, 288, 356
MslI CAYNNNNRTG 3 cut(s) 383, 395, 412
MspA1I CMGCKG 3 cut(s) 73, 102, 111
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 141, 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 108, 111, 150, 244
NciI CCSGG 1 cut(s) 141
NdeII GATC 4 cut(s) 221, 267, 400, 404
NlaIII CATG 4 cut(s) 337, 388, 411, 417
NotI GCGGCCGC 1 cut(s) 106
NspI RCATGY 1 cut(s) 337
PaeI GCATGC 1 cut(s) 337
PagI TCATGA 1 cut(s) 413
PfeI GAWTC 2 cut(s) 85, 374
PkrI GCNGC 5 cut(s) 75, 104, 107, 110, 113
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
RsaI GTAC 2 cut(s) 124, 171
RsaNI GTAC 2 cut(s) 123, 170
RseI CAYNNNNRTG 3 cut(s) 383, 395, 412
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 5 cut(s) 74, 103, 106, 109, 112
Sau3AI GATC 4 cut(s) 221, 267, 400, 404
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 141, 228
SduI GDGCHC 2 cut(s) 249, 306
SetI ASST 2 cut(s) 235, 306
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 383, 395, 412
SpeI ACTAGT 1 cut(s) 34
SphI GCATGC 1 cut(s) 337
Sse9I AATT 2 cut(s) 13, 361
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 139, 226
TaaI ACNGT 2 cut(s) 47, 311
TaqI TCGA 2 cut(s) 42, 403
TasI AATT 2 cut(s) 13, 361
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 2 cut(s) 85, 374
TscAI CASTG 1 cut(s) 397
TseI GCWGC 3 cut(s) 73, 102, 111
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 2 cut(s) 85, 173
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.