Rorug01G0174900

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
23812866 .. 23813844
979 bp
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UTR
Exon/CDS
Intron
Rorug01G0174900.1

Sequence Viewer

Length: 429 bp
ATGAATCAAGTTTGGCTAGGCCAAGGCTGCAAGGGCTTGACAACAATAAATAGAAGCAGTAAAAATGTTTATGGTGTTGATCCGCCGGGCAAAGCTTGTGTTAGCAGTGATTTTGGTGCAGCTCAGCTCCATTTGCATTTATTTTGGAGAGGAATTCAAGACCTCCGATCGATGACTTGGTCCATTACTGCAAAGATAATGTTGCTGAGCCTTTTCAATCCTGTGCTTGACCAGAACCTCTACTACATGGGAATGAAGAATTCGAGTGCAACGTTCACTTCTGCAATGTTGAATATGCTGCCTGCTTTTGCATTTTGTCTAGCCTGGATTTTTAGGTTTGAGAAGGTTAGCCTTAAGAAACTGCACAGCATAGCAAAGGTGATGGGGACGTTCATCACAGTCAGGGAGCAAGTCTTGACTCTAGTTTAA

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

9.76

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 28 - 127 8.6e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclI AACGTT 1 cut(s) 272
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 153, 259
AflII CTTAAG 1 cut(s) 353
AgsI TTSAA 3 cut(s) 158, 217, 292
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 3 cut(s) 95, 122, 127
AluI AGCT 3 cut(s) 95, 122, 127
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 27, 119, 298
ApoI RAATTY 2 cut(s) 153, 259
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 14, 131, 285
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 3 cut(s) 17, 320, 422
BfrI CTTAAG 1 cut(s) 353
BisI GCNGC 3 cut(s) 28, 120, 299
BlpI GCTNAGC 2 cut(s) 123, 206
BlsI GCNGC 3 cut(s) 29, 121, 300
Bme1390I CCNGG 2 cut(s) 87, 325
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 87, 325
Bpu1102I GCTNAGC 2 cut(s) 123, 206
BpuMI CCSGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 325
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 137, 197
BseXI GCAGC 3 cut(s) 14, 131, 285
BsgI GTGCAG 2 cut(s) 138, 347
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 79, 167
Bsp1720I GCTNAGC 2 cut(s) 123, 206
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 136, 198
BspDI ATCGAT 1 cut(s) 170
BspPI GGATC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 79, 167
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 400
BstAFI CTTAAG 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 123, 206
BstKTI GATC 2 cut(s) 82, 170
BstMBI GATC 2 cut(s) 79, 167
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 3 cut(s) 27, 33, 133
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 85, 323
BstV1I GCAGC 3 cut(s) 14, 131, 285
Bsu15I ATCGAT 1 cut(s) 170
BsuRI GGCC 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 180
ClaI ATCGAT 1 cut(s) 170
CviAII CATG 1 cut(s) 247
DdeI CTNAG 2 cut(s) 123, 206
DpnI GATC 2 cut(s) 81, 169
DpnII GATC 2 cut(s) 79, 167
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 180
EcoRI GAATTC 2 cut(s) 153, 259
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 250
FaiI YATR 4 cut(s) 72, 248, 296, 371
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 28, 120, 299
Fsp4HI GCNGC 3 cut(s) 28, 120, 299
FspBI CTAG 3 cut(s) 17, 320, 422
GluI GCNGC 3 cut(s) 28, 120, 299
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 2 cut(s) 4, 418
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 158, 415
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 272, 389
HpyCH4V TGCA 8 cut(s) 30, 119, 136, 191, 269, 284, 311, 364
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 33, 133
HpyF3I CTNAG 2 cut(s) 123, 206
HpySE526I ACGT 2 cut(s) 272, 389
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 2 cut(s) 79, 167
LmnI GCTCC 2 cut(s) 132, 406
LpnPI CCDG 7 cut(s) 99, 234, 245, 310, 315, 337, 388
Lsp1109I GCAGC 3 cut(s) 14, 131, 285
MaeI CTAG 3 cut(s) 17, 320, 422
MaeII ACGT 2 cut(s) 272, 389
MalI GATC 2 cut(s) 81, 169
MboI GATC 2 cut(s) 79, 167
MboII GAAGA 1 cut(s) 268
MluCI AATT 2 cut(s) 153, 259
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 3 cut(s) 143, 173, 248
MseI TTAA 2 cut(s) 354, 427
MslI CAYNNNNRTG 1 cut(s) 251
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 87, 325
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 3 cut(s) 27, 33, 133
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 79, 167
NlaIII CATG 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 29, 121, 300
Ple19I CGATCG 1 cut(s) 170
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspPI GGNCC 1 cut(s) 180
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PsyI GACNNNGTC 1 cut(s) 178
PvuI CGATCG 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 2 cut(s) 354, 427
SatI GCNGC 3 cut(s) 28, 120, 299
Sau3AI GATC 2 cut(s) 79, 167
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 87, 325
SinI GGWCC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 2 cut(s) 153, 259
SsiI CCGC 1 cut(s) 83
SspMI CTAG 3 cut(s) 17, 320, 422
StyD4I CCNGG 2 cut(s) 85, 323
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 275, 392
TaqI TCGA 2 cut(s) 170, 263
TasI AATT 2 cut(s) 153, 259
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 354, 427
Tru9I TTAA 2 cut(s) 354, 427
TscAI CASTG 1 cut(s) 112
TseI GCWGC 3 cut(s) 27, 119, 298
TspDTI ATGAA 3 cut(s) 17, 269, 382
TspRI CASTG 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 180
XapI RAATTY 2 cut(s) 153, 259
XspI CTAG 3 cut(s) 17, 320, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.