pycom07g07790

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000588
Physical Location & Seq
Reverse (-)
7099908 .. 7102213
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07790.2

Sequence Viewer

Length: 891 bp
ATGTATAATATGCTGGTGAATTGCTGCCACTGCCGCACCCCTCTCCAGCTGCCCCCCGGCGCCGATTCCATCCGCTGCGCAATCTGCCAGGGTGTCACTATAATTGCGGACTCACGTGGCCTCCGTCAGCCTCCAGCCTCCCACGCGCCTCCACCTCCAGCTCCTTACTCTCACGCCCCGTCACCTCCCTCCCCCTACTGTCACGCGCCTCCAGGCCCTCCCCCCAACGCGCACGGGCGGAAGAAGGCTGTGATCTGCGGGATCTCGTATAAGTACTCGAGACATGAGCTCAAGGGTTGCATCAATGATGCCAAGTGCATGCGGTATCTCCTCATCAACAAGTTCCAGTTTCCAGACGATTGCATTGTCATGCTCACCGAAGAAGAAACTCACCCTTCCAAGATTCCGAACAAATACAACATTAGAATGGCATTACATTGGCTTGTACAAGGCTGTCAACCAGGAGACTCCCTCCTGTTTCATTACTCTGGTCATGGTTCACAGCAGAGGAATTATAATGGTGATGAAATTGATGGTTTTGATGAAACGCTTTGTCCCCTTGACTTCGAAACTCAGGGTATGATTGTTGATGATGAGATAAATGCAGCAATTGTAAGGCCCCTTCCACCCGGGGTTAAGCTTCATGCAATAATTGATGCTTGTCATAGTGGCACCGTACTAGATTTGCCCTTCCTTTGCAGAATGGACAGGGGCGGACGATATGTATGGGAGGATCATCGCCCTTCATCAGGCATGTGGAAAGGATCAGGCGGTGGAGAAGTCATTTCCTTCAGTGGTTGTGATGATGATCAGACGTCTGCTGATACATCAGCTCTATCGAACGATCACATCAACAGGTGCTATGACTTTCTGCTTCATCCAAGCAATTGA

Protein Analysis

297

Amino Acids

32.64

Weight (kDa)

6.07

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AatII GACGTC 1 cut(s) 818
Acc16I TGCGCA 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 59, 671
AccII CGCG 3 cut(s) 146, 206, 230
AciI CCGC 8 cut(s) 34, 73, 107, 238, 258, 322, 714, 771
AclWI GGATC 3 cut(s) 269, 741, 772
AcuI CTGAAG 1 cut(s) 775
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 60, 815
AfaI GTAC 3 cut(s) 275, 447, 678
AfiI CCNNNNNNNGG 1 cut(s) 749
AjnI CCWGG 3 cut(s) 87, 211, 460
AluBI AGCT 5 cut(s) 49, 161, 289, 640, 833
AluI AGCT 5 cut(s) 49, 161, 289, 640, 833
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 274, 459
AlwI GGATC 3 cut(s) 269, 741, 772
Ama87I CYCGRG 2 cut(s) 277, 629
AoxI GGCC 3 cut(s) 118, 214, 617
ApeKI GCWGC 4 cut(s) 24, 49, 75, 605
AspLEI GCGC 5 cut(s) 62, 80, 148, 208, 232
AspS9I GGNCC 2 cut(s) 215, 618
AsuC2I CCSGG 3 cut(s) 57, 630, 631
AsuHPI GGTGA 5 cut(s) 28, 174, 367, 383, 533
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 2 cut(s) 277, 629
BanI GGYRCC 2 cut(s) 59, 671
BanII GRGCYC 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbrPI CACGTG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 11, 36, 62, 617
BccI CCATC 2 cut(s) 77, 527
BciT130I CCWGG 3 cut(s) 89, 213, 462
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 3 cut(s) 57, 630, 631
BcoDI GTCTC 2 cut(s) 274, 459
BfaI CTAG 1 cut(s) 680
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 5 cut(s) 25, 34, 50, 76, 606
BlsI GCNGC 5 cut(s) 26, 35, 51, 77, 607
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 6 cut(s) 57, 89, 213, 462, 630, 631
BmeT110I CYCGRG 2 cut(s) 277, 629
BmgT120I GGNCC 2 cut(s) 215, 618
BmiI GGNNCC 3 cut(s) 61, 620, 673
BmrFI CCNGG 6 cut(s) 57, 89, 213, 462, 630, 631
BmsI GCATC 3 cut(s) 298, 309, 646
BplI GAGNNNNNCTC 2 cut(s) 456, 488
BpmI CTGGAG 4 cut(s) 29, 117, 141, 195
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 57, 630, 631
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 807
BsaHI GRCGYC 2 cut(s) 60, 815
BsaJI CCNNGG 4 cut(s) 55, 88, 629, 630
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 3 cut(s) 89, 213, 462
BseDI CCNNGG 4 cut(s) 55, 88, 629, 630
BseGI GGATG 2 cut(s) 69, 877
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 4 cut(s) 11, 36, 62, 617
Bsh1236I CGCG 3 cut(s) 146, 206, 230
BshFI GGCC 3 cut(s) 120, 216, 619
BshNI GGYRCC 2 cut(s) 59, 671
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 2 cut(s) 277, 629
BsiSI CCGG 2 cut(s) 57, 630
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 2 cut(s) 274, 459
BsmFI GGGAC 1 cut(s) 540
BsnI GGCC 3 cut(s) 120, 216, 619
BsoBI CYCGRG 2 cut(s) 277, 629
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 6 cut(s) 252, 261, 733, 764, 808, 844
BspACI CCGC 8 cut(s) 34, 73, 107, 238, 258, 322, 714, 771
BspANI GGCC 3 cut(s) 120, 216, 619
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 3 cut(s) 146, 206, 230
BspLI GGNNCC 3 cut(s) 61, 620, 673
BspPI GGATC 3 cut(s) 269, 741, 772
BspT104I TTCGAA 1 cut(s) 567
BspT107I GGYRCC 2 cut(s) 59, 671
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 55, 88, 629, 630
BssMI GATC 6 cut(s) 252, 261, 733, 764, 808, 844
BssNI GRCGYC 2 cut(s) 60, 815
Bst2UI CCWGG 3 cut(s) 89, 213, 462
Bst4CI ACNGT 2 cut(s) 200, 676
BstACI GRCGYC 2 cut(s) 60, 815
BstAUI TGTACA 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 573
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 69, 877
BstFNI CGCG 3 cut(s) 146, 206, 230
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 5 cut(s) 62, 80, 148, 208, 232
BstKTI GATC 6 cut(s) 255, 264, 736, 767, 811, 847
BstMAI GTCTC 2 cut(s) 274, 459
BstMBI GATC 6 cut(s) 252, 261, 733, 764, 808, 844
BstMWI GCNNNNNNNGC 4 cut(s) 30, 33, 84, 143
BstNI CCWGG 3 cut(s) 89, 213, 462
BstNSI RCATGY 2 cut(s) 322, 757
BstSCI CCNGG 6 cut(s) 55, 87, 211, 460, 628, 629
BstUI CGCG 3 cut(s) 146, 206, 230
BstV1I GCAGC 4 cut(s) 11, 36, 62, 617
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuRI GGCC 3 cut(s) 120, 216, 619
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 2 cut(s) 69, 877
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 799
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 5 cut(s) 62, 80, 148, 208, 232
Cfr13I GGNCC 2 cut(s) 215, 618
Cfr9I CCCGGG 1 cut(s) 629
Csp6I GTAC 3 cut(s) 274, 446, 677
CviAII CATG 6 cut(s) 284, 319, 370, 494, 644, 754
CviQI GTAC 3 cut(s) 274, 446, 677
DdeI CTNAG 1 cut(s) 573
DinI GGCGCC 1 cut(s) 61
DpnI GATC 6 cut(s) 254, 263, 735, 766, 810, 846
DpnII GATC 6 cut(s) 252, 261, 733, 764, 808, 844
EciI GGCGGA 2 cut(s) 253, 729
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 775
Eco72I CACGTG 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 277, 629
EcoICRI GAGCTC 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoO109I RGGNCCY 2 cut(s) 215, 618
EcoRII CCWGG 3 cut(s) 87, 211, 460
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
FaeI CATG 6 cut(s) 287, 322, 373, 497, 647, 757
FaqI GGGAC 1 cut(s) 540
FatI CATG 6 cut(s) 283, 318, 369, 493, 643, 753
FauI CCCGC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 25, 34, 50, 76, 606
FokI GGATG 2 cut(s) 56, 864
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 5 cut(s) 25, 34, 50, 76, 606
FspBI CTAG 1 cut(s) 680
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 5 cut(s) 61, 79, 147, 207, 231
GluI GCNGC 5 cut(s) 25, 34, 50, 76, 606
GsuI CTGGAG 4 cut(s) 29, 117, 141, 195
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 3 cut(s) 120, 216, 619
HapII CCGG 2 cut(s) 57, 630
HhaI GCGC 5 cut(s) 62, 80, 148, 208, 232
Hin1I GRCGYC 2 cut(s) 60, 815
Hin1II CATG 6 cut(s) 287, 322, 373, 497, 647, 757
Hin6I GCGC 5 cut(s) 60, 78, 146, 206, 230
HinP1I GCGC 5 cut(s) 60, 78, 146, 206, 230
HincII GTYRAC 1 cut(s) 458
HindII GTYRAC 1 cut(s) 458
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 4 cut(s) 65, 110, 403, 467
HpaII CCGG 2 cut(s) 57, 630
HphI GGTGA 5 cut(s) 28, 174, 367, 383, 533
Hpy166II GTNNAC 2 cut(s) 458, 500
Hpy188I TCNGA 2 cut(s) 408, 813
Hpy188III TCNNGA 2 cut(s) 279, 353
Hpy8I GTNNAC 2 cut(s) 458, 500
HpyAV CCTTC 6 cut(s) 238, 405, 632, 700, 753, 799
HpyCH4III ACNGT 2 cut(s) 200, 676
HpyCH4IV ACGT 2 cut(s) 115, 815
HpyCH4V TGCA 6 cut(s) 300, 318, 363, 605, 647, 699
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 33, 84, 143
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 2 cut(s) 115, 815
Hsp92I GRCGYC 2 cut(s) 60, 815
Hsp92II CATG 6 cut(s) 287, 322, 373, 497, 647, 757
HspAI GCGC 5 cut(s) 60, 78, 146, 206, 230
KasI GGCGCC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 6 cut(s) 252, 261, 733, 764, 808, 844
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 4 cut(s) 11, 36, 62, 617
LweI GCATC 3 cut(s) 298, 309, 646
MaeI CTAG 1 cut(s) 680
MaeII ACGT 2 cut(s) 115, 815
MaeIII GTNAC 3 cut(s) 94, 180, 200
MalI GATC 6 cut(s) 254, 263, 735, 766, 810, 846
MboI GATC 6 cut(s) 252, 261, 733, 764, 808, 844
MboII GAAGA 3 cut(s) 253, 392, 395
MfeI CAATTG 2 cut(s) 609, 886
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 7 cut(s) 19, 102, 511, 528, 609, 651, 886
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 2 cut(s) 104, 461
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 2 cut(s) 368, 425
MspA1I CMGCKG 2 cut(s) 49, 75
MspI CCGG 2 cut(s) 57, 630
MspR9I CCNGG 6 cut(s) 57, 89, 213, 462, 630, 631
MunI CAATTG 2 cut(s) 609, 886
MvaI CCWGG 3 cut(s) 89, 213, 462
MvnI CGCG 3 cut(s) 146, 206, 230
MwoI GCNNNNNNNGC 4 cut(s) 30, 33, 84, 143
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 3 cut(s) 57, 630, 631
NdeII GATC 6 cut(s) 252, 261, 733, 764, 808, 844
NlaIII CATG 6 cut(s) 287, 322, 373, 497, 647, 757
NlaIV GGNNCC 3 cut(s) 61, 620, 673
NmuCI GTSAC 3 cut(s) 94, 180, 200
NsbI TGCGCA 1 cut(s) 79
NspI RCATGY 2 cut(s) 322, 757
NspV TTCGAA 1 cut(s) 567
PaeI GCATGC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 2 cut(s) 65, 403
PkrI GCNGC 5 cut(s) 26, 35, 51, 77, 607
PleI GAGTC 2 cut(s) 104, 461
PluTI GGCGCC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 2 cut(s) 104, 461
Ppu21I YACGTR 1 cut(s) 116
PsiI TTATAA 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 87, 211, 460
PspCI CACGTG 1 cut(s) 116
PspGI CCWGG 3 cut(s) 87, 211, 460
PspN4I GGNNCC 3 cut(s) 61, 620, 673
PspPI GGNCC 2 cut(s) 215, 618
PsuI RGATCY 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 3 cut(s) 275, 447, 678
RsaNI GTAC 3 cut(s) 274, 446, 677
RseI CAYNNNNRTG 2 cut(s) 368, 425
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 5 cut(s) 25, 34, 50, 76, 606
Sau3AI GATC 6 cut(s) 252, 261, 733, 764, 808, 844
Sau96I GGNCC 2 cut(s) 215, 618
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 2 cut(s) 104, 461
ScrFI CCNGG 6 cut(s) 57, 89, 213, 462, 630, 631
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 3 cut(s) 298, 309, 646
SfoI GGCGCC 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 567
SlaI CTCGAG 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 631
SmiMI CAYNNNNRTG 2 cut(s) 368, 425
SmlI CTYRAG 2 cut(s) 277, 290
SmoI CTYRAG 2 cut(s) 277, 290
SphI GCATGC 1 cut(s) 322
Sse9I AATT 7 cut(s) 19, 102, 511, 528, 609, 651, 886
SsiI CCGC 8 cut(s) 34, 73, 107, 238, 258, 322, 714, 771
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 680
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 6 cut(s) 55, 87, 211, 460, 628, 629
TaaI ACNGT 2 cut(s) 200, 676
TaiI ACGT 2 cut(s) 118, 818
TaqI TCGA 3 cut(s) 278, 567, 839
TasI AATT 7 cut(s) 19, 102, 511, 528, 609, 651, 886
TatI WGTACW 2 cut(s) 273, 445
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 65, 403
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 2 cut(s) 35, 799
TseFI GTSAC 3 cut(s) 94, 180, 200
TseI GCWGC 4 cut(s) 24, 49, 75, 605
Tsp45I GTSAC 3 cut(s) 94, 180, 200
TspDTI ATGAA 6 cut(s) 470, 540, 558, 632, 735, 866
TspGWI ACGGA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 629
TspRI CASTG 2 cut(s) 35, 799
XagI CCTNNNNNAGG 1 cut(s) 747
XceI RCATGY 2 cut(s) 322, 757
XhoI CTCGAG 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 629
XspI CTAG 1 cut(s) 680
ZraI GACGTC 1 cut(s) 816
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.