Rmu_co8518347.1_g000001

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8518347.1
OG0000588
Physical Location & Seq
Reverse (-)
2013 .. 4861
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8518347.1_g000001.1.cds

Sequence Viewer

Length: 1116 bp
atggtgatgagcaataacggtggccaacgacaacaaatggggtactgttgcaattgccagacccagatcccgctgccttcggaggtcaactctccgggctccacccgctcctcccgtagtgctgtagtctacaatgtctttttaggttgcatttgcactactgtttctgataatcaagttattggaaccgctggggaccataatggaagtttttatgttggcaacactcttcttccctcgccctacaaccacgcgccgccggaacgtcagccgaaagtgcacaggccgaagaaggcggtgatctgcggaatatcgtataaaaagtcgccgcatgagctcaagggttgcatcaatgatgccaaatgcatgcgggatctcctcatcaacaagttcaagtttccagaagattccattctcatgctcactgaagaagaaactgacccatgtaagattccctataaaaacaacattgaaagggaattacgttggcttgtacaaggatgtcaacatggtgactcccttctgttttacttctctggtcatgtttcaaggctgaggaagctgtatcctcatgatgaagaagatagatatcatgaaaccctctgtccccttgagttcgaaacccagggtatgattgttgatgattggataaatgcaacaattgttaggccaattccagatggggtcaagcttcatgcaattatagattgttctcatagtggcaccatactggatttgccatggctttgcagaatggacgggggtggaaactatacatgggacaaggcatcaggcatatggaaaggaacaagtggtggagaagttatatgtatcagtggctgtgttgaccatcaaacctctacggaaacacaatcaatcacatcaacaggtaccatgacttcctgcttcatccaagcaatcgagagtggacaggcagccacatatgggagcttactcgatcttatgcgtaataacattcgaagtagggatgctgttacatatcttgccggcatgcttcaaacaggcggaagtgttggtggtggtaggctaagacaggatcctcaattaagtgcatgcaagcagttccatgtgtaccagaaaccttttgccctgtaa

Protein Analysis

371

Amino Acids

41.08

Weight (kDa)

6.63

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 890
AccB1I GGYRCC 2 cut(s) 722, 890
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 254
AciI CCGC 9 cut(s) 71, 106, 189, 257, 296, 306, 329, 370, 1026
AclWI GGATC 4 cut(s) 61, 381, 1052, 1065
AcoI YGGCCR 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 4 cut(s) 44, 495, 892, 1094
AfiI CCNNNNNNNGG 1 cut(s) 945
AgsI TTSAA 4 cut(s) 394, 473, 549, 1019
AjnI CCWGG 1 cut(s) 624
AluBI AGCT 4 cut(s) 337, 562, 691, 951
AluI AGCT 4 cut(s) 337, 562, 691, 951
Alw21I GWGCWC 2 cut(s) 282, 339
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 4 cut(s) 61, 381, 1052, 1065
AlwNI CAGNNNCTG 1 cut(s) 840
AoxI GGCC 3 cut(s) 22, 284, 668
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 73, 935
Asp718I GGTACC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 3 cut(s) 16, 310, 524
AsuII TTCGAA 2 cut(s) 618, 979
AvaII GGWCC 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 282
BalI TGGCCA 1 cut(s) 24
BamHI GGATCC 1 cut(s) 1057
BanI GGYRCC 2 cut(s) 722, 890
BanII GRGCYC 2 cut(s) 101, 339
BarI GAAGNNNNNNTAC 2 cut(s) 883, 915
Bbv12I GWGCWC 2 cut(s) 282, 339
BbvCI CCTCAGC 1 cut(s) 554
BbvI GCAGC 2 cut(s) 60, 947
BccI CCATC 2 cut(s) 674, 858
BciT130I CCWGG 1 cut(s) 626
BciVI GTATCC 1 cut(s) 576
BcnI CCSGG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 4 cut(s) 74, 257, 329, 936
BlsI GCNGC 4 cut(s) 75, 258, 330, 937
Bme1390I CCNGG 2 cut(s) 96, 626
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 6 cut(s) 100, 187, 197, 724, 892, 1059
BmrFI CCNGG 2 cut(s) 96, 626
BmsI GCATC 4 cut(s) 346, 357, 797, 979
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bpu10I CCTNAGC 1 cut(s) 554
Bpu14I TTCGAA 2 cut(s) 618, 979
BpuEI CTTGAG 2 cut(s) 323, 632
BpuMI CCSGG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 624, 625, 740
Bsc4I CCNNNNNNNGG 1 cut(s) 945
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 1 cut(s) 626
BseDI CCNNGG 3 cut(s) 624, 625, 740
BseGI GGATG 3 cut(s) 506, 909, 994
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 945
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 2 cut(s) 100, 368
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 60, 947
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 3 cut(s) 24, 286, 670
BshNI GGYRCC 2 cut(s) 722, 890
BsiHKAI GWGCWC 2 cut(s) 282, 339
BsiSI CCGG 3 cut(s) 95, 260, 1008
BslFI GGGAC 3 cut(s) 209, 591, 794
BslI CCNNNNNNNGG 1 cut(s) 945
BsmFI GGGAC 3 cut(s) 209, 591, 794
BsnI GGCC 3 cut(s) 24, 286, 670
Bsp119I TTCGAA 2 cut(s) 618, 979
Bsp1286I GDGCHC 3 cut(s) 101, 282, 339
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 5 cut(s) 66, 300, 373, 958, 1057
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 9 cut(s) 71, 106, 189, 257, 296, 306, 329, 370, 1026
BspANI GGCC 3 cut(s) 24, 286, 670
BspCNI CTCAG 1 cut(s) 546
BspFNI CGCG 1 cut(s) 254
BspHI TCATGA 2 cut(s) 571, 592
BspLI GGNNCC 6 cut(s) 100, 187, 197, 724, 892, 1059
BspPI GGATC 4 cut(s) 61, 381, 1052, 1065
BspT104I TTCGAA 2 cut(s) 618, 979
BspT107I GGYRCC 2 cut(s) 722, 890
BsrBI CCGCTC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 1007
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 1 cut(s) 735
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 3 cut(s) 624, 625, 740
BssMI GATC 5 cut(s) 66, 300, 373, 958, 1057
BssT1I CCWWGG 1 cut(s) 740
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 3 cut(s) 20, 47, 163
Bst6I CTCTTC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 493
BstBI TTCGAA 2 cut(s) 618, 979
BstC8I GCNNGC 5 cut(s) 368, 1009, 1013, 1075, 1079
BstDEI CTNAG 2 cut(s) 554, 1049
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 3 cut(s) 506, 909, 994
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 5 cut(s) 69, 303, 376, 961, 1060
BstMBI GATC 5 cut(s) 66, 300, 373, 958, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 105, 277, 334, 559
BstNI CCWGG 1 cut(s) 626
BstNSI RCATGY 3 cut(s) 370, 1015, 1077
BstSCI CCNGG 2 cut(s) 94, 624
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 60, 947
BstX2I RGATCY 3 cut(s) 66, 373, 1057
BstYI RGATCY 3 cut(s) 66, 373, 1057
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 3 cut(s) 24, 286, 670
BtgI CCRYGG 1 cut(s) 740
BtsCI GGATG 3 cut(s) 506, 909, 994
BtsIMutI CAGTG 2 cut(s) 423, 841
Cac8I GCNNGC 5 cut(s) 368, 1009, 1013, 1075, 1079
CaiI CAGNNNCTG 1 cut(s) 840
CciI TCATGA 2 cut(s) 571, 592
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 4 cut(s) 43, 494, 891, 1093
CspCI CAANNNNNGTGG 1 cut(s) 36
CviQI GTAC 4 cut(s) 43, 494, 891, 1093
DdeI CTNAG 2 cut(s) 554, 1049
DpnI GATC 5 cut(s) 68, 302, 375, 960, 1059
DpnII GATC 5 cut(s) 66, 300, 373, 958, 1057
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 1 cut(s) 1041
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 740
Eco24I GRGCYC 2 cut(s) 101, 339
Eco32I GATATC 1 cut(s) 590
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 624
EcoRV GATATC 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 740
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 101, 339
ErhI CCWWGG 1 cut(s) 740
FaqI GGGAC 3 cut(s) 209, 591, 794
FauI CCCGC 3 cut(s) 78, 113, 363
FauNDI CATATG 2 cut(s) 797, 943
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 74, 257, 329, 936
FokI GGATG 3 cut(s) 513, 896, 1001
FriOI GRGCYC 2 cut(s) 101, 339
Fsp4HI GCNGC 4 cut(s) 74, 257, 329, 936
GlaI GCGC 1 cut(s) 255
GluI GCNGC 4 cut(s) 74, 257, 329, 936
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 24, 286, 670
HapII CCGG 3 cut(s) 95, 260, 1008
HhaI GCGC 1 cut(s) 256
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 3 cut(s) 88, 506, 847
HindII GTYRAC 3 cut(s) 88, 506, 847
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 3 cut(s) 407, 451, 515
HpaII CCGG 3 cut(s) 95, 260, 1008
HphI GGTGA 3 cut(s) 16, 310, 524
Hpy166II GTNNAC 7 cut(s) 88, 130, 280, 506, 847, 929, 1093
Hpy188I TCNGA 2 cut(s) 82, 169
Hpy188III TCNNGA 5 cut(s) 401, 572, 593, 677, 922
Hpy8I GTNNAC 7 cut(s) 88, 130, 280, 506, 847, 929, 1093
HpyAV CCTTC 3 cut(s) 87, 286, 530
HpyCH4III ACNGT 3 cut(s) 20, 47, 163
HpyCH4IV ACGT 2 cut(s) 265, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 277, 334, 559
HpyF3I CTNAG 2 cut(s) 554, 1049
HpySE526I ACGT 2 cut(s) 265, 484
HspAI GCGC 1 cut(s) 254
KpnI GGTACC 1 cut(s) 894
KroI GCCGGC 1 cut(s) 1007
KroNI GCCGGC 1 cut(s) 1009
Kzo9I GATC 5 cut(s) 66, 300, 373, 958, 1057
LmnI GCTCC 3 cut(s) 104, 113, 948
Lsp1109I GCAGC 2 cut(s) 60, 947
LweI GCATC 4 cut(s) 346, 357, 797, 979
MaeII ACGT 2 cut(s) 265, 484
MaeIII GTNAC 2 cut(s) 512, 994
MalI GATC 5 cut(s) 68, 302, 375, 960, 1059
MbiI CCGCTC 1 cut(s) 108
MboI GATC 5 cut(s) 66, 300, 373, 958, 1057
MboII GAAGA 8 cut(s) 221, 224, 301, 416, 440, 443, 590, 593
MfeI CAATTG 2 cut(s) 52, 660
MflI RGATCY 3 cut(s) 66, 373, 1057
MhlI GDGCHC 3 cut(s) 101, 282, 339
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 6 cut(s) 52, 479, 660, 672, 699, 1064
MluNI TGGCCA 1 cut(s) 24
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 9 cut(s) 76, 121, 247, 389, 549, 579, 611, 868, 1071
Mox20I TGGCCA 1 cut(s) 24
Mph1103I ATGCAT 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 1007
MscI TGGCCA 1 cut(s) 24
MseI TTAA 1 cut(s) 1067
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 24
MspA1I CMGCKG 2 cut(s) 73, 191
MspI CCGG 3 cut(s) 95, 260, 1008
MspR9I CCNGG 2 cut(s) 96, 626
MunI CAATTG 2 cut(s) 52, 660
MvaI CCWGG 1 cut(s) 626
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 105, 277, 334, 559
NaeI GCCGGC 1 cut(s) 1009
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 740
NdeI CATATG 2 cut(s) 797, 943
NdeII GATC 5 cut(s) 66, 300, 373, 958, 1057
NgoMIV GCCGGC 1 cut(s) 1007
NlaIV GGNNCC 6 cut(s) 100, 187, 197, 724, 892, 1059
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 3 cut(s) 370, 1015, 1077
NspV TTCGAA 2 cut(s) 618, 979
PaeI GCATGC 3 cut(s) 370, 1015, 1077
PagI TCATGA 2 cut(s) 571, 592
PasI CCCWGGG 1 cut(s) 625
PdiI GCCGGC 1 cut(s) 1009
PfeI GAWTC 2 cut(s) 407, 451
PkrI GCNGC 4 cut(s) 75, 258, 330, 937
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 624
PspN4I GGNNCC 6 cut(s) 100, 187, 197, 724, 892, 1059
PspPI GGNCC 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 840
PsuI RGATCY 3 cut(s) 66, 373, 1057
RsaI GTAC 4 cut(s) 44, 495, 892, 1094
RsaNI GTAC 4 cut(s) 43, 494, 891, 1093
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 4 cut(s) 74, 257, 329, 936
Sau3AI GATC 5 cut(s) 66, 300, 373, 958, 1057
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 96, 626
SduI GDGCHC 3 cut(s) 101, 282, 339
SfaNI GCATC 4 cut(s) 346, 357, 797, 979
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 2 cut(s) 618, 979
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 338, 611
SmoI CTYRAG 2 cut(s) 338, 611
SphI GCATGC 3 cut(s) 370, 1015, 1077
Sse9I AATT 6 cut(s) 52, 479, 660, 672, 699, 1064
SsiI CCGC 9 cut(s) 71, 106, 189, 257, 296, 306, 329, 370, 1026
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 94, 624
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 3 cut(s) 20, 47, 163
TaiI ACGT 2 cut(s) 268, 487
TaqI TCGA 4 cut(s) 618, 921, 957, 979
TasI AATT 6 cut(s) 52, 479, 660, 672, 699, 1064
TatI WGTACW 1 cut(s) 493
TauI GCSGC 2 cut(s) 259, 331
TfiI GAWTC 2 cut(s) 407, 451
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 2 cut(s) 430, 841
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 2 cut(s) 73, 935
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 591, 609, 683, 898
TspGWI ACGGA 1 cut(s) 878
TspRI CASTG 2 cut(s) 430, 841
VneI GTGCAC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 196
XceI RCATGY 3 cut(s) 370, 1015, 1077
XmiI GTMKAC 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.