Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413861.1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1275

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 697 bp

atgatgatgagcaattatggaggccaacgacttctagtggtcgactgttgctattgccagacccaaatccagctgccttctgtgagtccgatatacatcgtcggcacatccgtccgctgcggccgctgctatgccagtacccgcgtcgcctctccgggcttcccccgctccccccatagtgccgtaccctactatgcccttataaacccaccaccacatgcctgcttcccccatacatcaccaggacctccgccgaacgtgcatgggcggaagaaggcggtgatctgcgggatatcgtatagaaactcgagggatgagctcaattgttgcatcaatgacgccaaatgcatgcggtatctcctcatcaccaagttcaagtttccagaagattccattctcatgctcactgaagaagaaactcacccacatatgattccatataaaaacaacattagaagggcattatgttggcttgtacaaggatgtcaatcgggggactcccttctgttttacttctccggtcatggttcacggcagaggaattatgatagtgatgaagttgatggatatgatgaaaccctttgcccccttgactttgaaacccagggtatgattgttgatgatgagataaatgcagcaattgttaggcccattccacatggggtcaagcttcatgcaattatagattcttgtcata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

232

Amino Acids

26.01

Weight (kDa)

6.77

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	429
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	3 cut(s)	139, 186, 477
AgsI	TTSAA	2 cut(s)	376, 599
AjnI	CCWGG	2 cut(s)	241, 603
AluBI	AGCT	3 cut(s)	73, 319, 670
AluI	AGCT	3 cut(s)	73, 319, 670
Alw21I	GWGCWC	1 cut(s)	321
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	3 cut(s)	22, 121, 647
ApeKI	GCWGC	4 cut(s)	73, 117, 126, 635
AspS9I	GGNCC	2 cut(s)	245, 648
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	4 cut(s)	231, 292, 358, 413
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	4 cut(s)	60, 104, 113, 647
BccI	CCATC	1 cut(s)	557
BceAI	ACGGC	2 cut(s)	167, 548
BciT130I	CCWGG	2 cut(s)	243, 605
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	6 cut(s)	74, 118, 121, 124, 127, 636
BlsI	GCNGC	6 cut(s)	75, 119, 122, 125, 128, 637
Bme1390I	CCNGG	3 cut(s)	156, 243, 605
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	245, 648
BmrFI	CCNGG	3 cut(s)	156, 243, 605
BmsI	GCATC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	156
BsaBI	GATNNNNATC	2 cut(s)	95, 487
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	603, 604
BsaWI	WCCGGW	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	135
Bse8I	GATNNNNATC	2 cut(s)	95, 487
BseBI	CCWGG	2 cut(s)	243, 605
BseDI	CCNNGG	2 cut(s)	603, 604
BseGI	GGATG	3 cut(s)	107, 319, 488
BseJI	GATNNNNATC	2 cut(s)	95, 487
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	4 cut(s)	60, 104, 113, 647
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	24, 123, 649
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	155, 519
BslFI	GGGAC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	24, 123, 649
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp1407I	TGTACA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	3 cut(s)	24, 123, 649
BspFNI	CGCG	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	603, 604
BssMI	GATC	1 cut(s)	282
BssNI	GRCGYC	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	243, 605
Bst4CI	ACNGT	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	223, 350
BstF5I	GGATG	3 cut(s)	107, 319, 488
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 126, 165, 259
BstNI	CCWGG	2 cut(s)	243, 605
BstNSI	RCATGY	2 cut(s)	221, 352
BstSCI	CCNGG	3 cut(s)	154, 241, 603
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	60, 104, 113, 647
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	24, 123, 649
BtsCI	GGATG	3 cut(s)	107, 319, 488
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	223, 350
CciNI	GCGGCCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	245, 648
CseI	GACGC	2 cut(s)	133, 347
Csp6I	GTAC	3 cut(s)	138, 185, 476
CviAII	CATG	7 cut(s)	218, 263, 349, 400, 524, 659, 674
CviJI	RGCY	8 cut(s)	24, 73, 123, 159, 319, 472, 649, 670
CviKI_1	RGCY	8 cut(s)	24, 73, 123, 159, 319, 472, 649, 670
CviQI	GTAC	3 cut(s)	138, 185, 476
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	121
EagI	CGGCCG	1 cut(s)	121
EciI	GGCGGA	2 cut(s)	240, 283
Ecl136II	GAGCTC	1 cut(s)	319
EclXI	CGGCCG	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	245
Eco52I	CGGCCG	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	241, 603
EcoRV	GATATC	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	7 cut(s)	221, 266, 352, 403, 527, 662, 677
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	7 cut(s)	217, 262, 348, 399, 523, 658, 673
FauI	CCCGC	3 cut(s)	149, 173, 281
FauNDI	CATATG	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	6 cut(s)	74, 118, 121, 124, 127, 636
FokI	GGATG	3 cut(s)	94, 326, 495
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	6 cut(s)	74, 118, 121, 124, 127, 636
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	6 cut(s)	74, 118, 121, 124, 127, 636
HaeIII	GGCC	3 cut(s)	24, 123, 649
HapII	CCGG	2 cut(s)	155, 519
HgaI	GACGC	2 cut(s)	133, 347
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	7 cut(s)	221, 266, 352, 403, 527, 662, 677
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	5 cut(s)	85, 389, 433, 497, 686
HpaII	CCGG	2 cut(s)	155, 519
HphI	GGTGA	4 cut(s)	231, 292, 358, 413
Hpy166II	GTNNAC	2 cut(s)	43, 530
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	43, 530
Hpy99I	CGWCG	2 cut(s)	104, 149
HpyAV	CCTTC	4 cut(s)	87, 268, 450, 512
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	262, 330, 348, 635, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 126, 165, 259
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	7 cut(s)	221, 266, 352, 403, 527, 662, 677
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	4 cut(s)	60, 104, 113, 647
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	284
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	282
MboII	GAAGA	4 cut(s)	283, 398, 422, 425
MfeI	CAATTG	2 cut(s)	322, 639
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	5 cut(s)	13, 322, 541, 639, 678
MlyI	GAGTC	2 cut(s)	94, 491
MnlI	CCTC	6 cut(s)	14, 160, 258, 303, 371, 531
Mph1103I	ATGCAT	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	3 cut(s)	73, 117, 126
MspI	CCGG	2 cut(s)	155, 519
MspR9I	CCNGG	3 cut(s)	156, 243, 605
MunI	CAATTG	2 cut(s)	322, 639
MvaI	CCWGG	2 cut(s)	243, 605
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	4 cut(s)	123, 126, 165, 259
NciI	CCSGG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	7 cut(s)	221, 266, 352, 403, 527, 662, 677
NotI	GCGGCCGC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	2 cut(s)	221, 352
PaeI	GCATGC	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	389, 433, 686
PkrI	GCNGC	6 cut(s)	75, 119, 122, 125, 128, 637
PleI	GAGTC	2 cut(s)	93, 491
PpsI	GAGTC	2 cut(s)	93, 491
PpuMI	RGGWCCY	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	241, 603
PspGI	CCWGG	2 cut(s)	241, 603
PspPI	GGNCC	2 cut(s)	245, 648
PspPPI	RGGWCCY	1 cut(s)	245
PspXI	VCTCGAGB	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	3 cut(s)	139, 186, 477
RsaNI	GTAC	3 cut(s)	138, 185, 476
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	6 cut(s)	74, 118, 121, 124, 127, 636
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	245, 648
SchI	GAGTC	2 cut(s)	94, 491
ScrFI	CCNGG	3 cut(s)	156, 243, 605
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	5 cut(s)	75, 250, 261, 321, 672
SfaNI	GCATC	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	5 cut(s)	13, 322, 541, 639, 678
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	154, 241, 603
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	42, 308
TasI	AATT	5 cut(s)	13, 322, 541, 639, 678
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	2 cut(s)	123, 126
TfiI	GAWTC	3 cut(s)	389, 433, 686
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	4 cut(s)	73, 117, 126, 635
TspDTI	ATGAA	3 cut(s)	570, 588, 662
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	2 cut(s)	221, 352
XhoI	CTCGAG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.