Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

17496314 .. 17497691

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCGTTGCTGGTAGACTGCTCCGGCTGCAAGACGCCGCTGCAGCTGCCGCCCGGCGCTAGGACGATCCGCTGCCCCCTGTGCCAGGCATTCACCCGCATCGCCGACTCCCGCGCTTTTCCACCTCCGCCCTACTCTTCCTCCTCCTCCTCATCTAACCACAACCCTCCTCCGCCCTCCACTTCTCCCTACAACGACTCGCCGCCGGTGCCTCCTCCGTCGGTGCACGGGCGGAAGCGAGCTGTGATATGTGCCGTGTCGTACAAGCGGTCCCGTCACGAGCTCAAGGGATGCATTAACGACGCCAAGTGTATGAAGTACTTGCTGGTCAACAAGTTCAGCTTTCCAGAATCCTCCATTCTCATGCTCACCGAAGAAGAAGCTGATCCTTATAGGCACCCAACCAAGCAAAATATGAGAATGGCGCTGTTTTGGCTTGTGCAAGGTTGTCAAGCAGGGGATTCTTTGGTGTTTCATTATTCTGGTCATGGATCACAACAGAGGAACTACACCGGGGATGAGGTGGATGGATTTGATGAAACGCTATGTCCTTCGGATTTTGAGACTCAGGGGATGATTATCGATGATGAGATCAATGCAACAATTGTCAAACCTCTTCCCACCGGGGCTAGGCTTCATGCAATTGTGGATGCTTGCCACAGTGGTACTGTGCTAGATTTACCATTTCTCTGTAGGATGGACAGCATTGAACGGGAAGTACGTATGGGAGGATCATCGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14 zf-LSD1

Protein Analysis

248

Amino Acids

27.17

Weight (kDa)

6.44

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	7 - 30	2.4e-09	LSD1 zinc finger
Peptidase_C14	PF00656	79 - 233	4.4e-26	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 396
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	114
AclWI	GGATC	4 cut(s)	61, 380, 499, 739
AcyI	GRCGYC	2 cut(s)	35, 303
AfaI	GTAC	4 cut(s)	263, 320, 667, 720
AfiI	CCNNNNNNNGG	3 cut(s)	60, 85, 630
AgsI	TTSAA	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	5 cut(s)	46, 242, 283, 342, 383
AluI	AGCT	5 cut(s)	46, 242, 283, 342, 383
Alw21I	GWGCWC	2 cut(s)	228, 285
Alw26I	GTCTC	1 cut(s)	557
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	4 cut(s)	61, 380, 499, 739
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	5 cut(s)	27, 40, 43, 46, 72
AspLEI	GCGC	3 cut(s)	59, 116, 427
AspS9I	GGNCC	1 cut(s)	270
AsuC2I	CCSGG	3 cut(s)	54, 514, 625
AsuHPI	GGTGA	2 cut(s)	85, 361
AvaII	GGWCC	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	208, 396
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	278
Bbv12I	GWGCWC	2 cut(s)	228, 285
BbvI	GCAGC	5 cut(s)	14, 27, 33, 55, 59
BccI	CCATC	2 cut(s)	521, 691
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	3 cut(s)	54, 514, 625
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	4 cut(s)	60, 630, 674, 742
BfmI	CTRYAG	2 cut(s)	41, 691
BfoI	RGCGCY	2 cut(s)	60, 428
BisI	GCNGC	8 cut(s)	28, 38, 41, 44, 47, 50, 73, 203
BlsI	GCNGC	8 cut(s)	29, 39, 42, 45, 48, 51, 74, 204
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	4 cut(s)	54, 86, 514, 625
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	3 cut(s)	210, 272, 398
BmrFI	CCNGG	4 cut(s)	54, 86, 514, 625
BmsI	GCATC	3 cut(s)	108, 281, 640
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	3 cut(s)	54, 514, 625
Bsa29I	ATCGAT	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	578
BsaHI	GRCGYC	2 cut(s)	35, 303
BsaJI	CCNNGG	2 cut(s)	513, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 85, 630
Bse118I	RCCGGY	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	513, 624
BseGI	GGATG	6 cut(s)	296, 523, 532, 579, 655, 702
BseJI	GATNNNNATC	1 cut(s)	578
BseLI	CCNNNNNNNGG	3 cut(s)	60, 85, 630
BseMII	CTCAG	1 cut(s)	581
BseRI	GAGGAG	5 cut(s)	133, 136, 139, 159, 204
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	5 cut(s)	14, 27, 33, 55, 59
Bsh1236I	CGCG	1 cut(s)	114
BshNI	GGYRCC	2 cut(s)	208, 396
BshVI	ATCGAT	1 cut(s)	582
BsiHKAI	GWGCWC	2 cut(s)	228, 285
BsiSI	CCGG	5 cut(s)	24, 54, 206, 513, 624
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	60, 85, 630
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	228, 285
Bsp143I	GATC	5 cut(s)	66, 385, 491, 591, 731
BspCNI	CTCAG	1 cut(s)	580
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	210, 272, 398
BspMAI	CTGCAG	1 cut(s)	45
BspPI	GGATC	4 cut(s)	61, 380, 499, 739
BspT107I	GGYRCC	2 cut(s)	208, 396
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	513, 624
BssMI	GATC	5 cut(s)	66, 385, 491, 591, 731
BssNI	GRCGYC	2 cut(s)	35, 303
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	662, 670
Bst6I	CTCTTC	2 cut(s)	142, 621
BstACI	GRCGYC	2 cut(s)	35, 303
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	240, 655
BstDEI	CTNAG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	6 cut(s)	296, 523, 532, 579, 655, 702
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	2 cut(s)	60, 428
BstHHI	GCGC	3 cut(s)	59, 116, 427
BstKTI	GATC	5 cut(s)	69, 388, 494, 594, 734
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	5 cut(s)	66, 385, 491, 591, 731
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 43, 46, 49, 81, 208, 433
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	4 cut(s)	52, 84, 512, 623
BstSFI	CTRYAG	2 cut(s)	41, 691
BstSLI	GKGCMC	1 cut(s)	228
BstSNI	TACGTA	1 cut(s)	722
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	14, 27, 33, 55, 59
Bsu15I	ATCGAT	1 cut(s)	582
BsuTUI	ATCGAT	1 cut(s)	582
BtgZI	GCGATG	2 cut(s)	85, 720
BtsCI	GGATG	6 cut(s)	296, 523, 532, 579, 655, 702
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	240, 655
CfoI	GCGC	3 cut(s)	59, 116, 427
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	2 cut(s)	43, 311
Csp6I	GTAC	4 cut(s)	262, 319, 666, 719
CviAII	CATG	3 cut(s)	364, 488, 638
CviJI	RGCY	9 cut(s)	27, 46, 242, 283, 342, 383, 436, 629, 634
CviKI_1	RGCY	9 cut(s)	27, 46, 242, 283, 342, 383, 436, 629, 634
CviQI	GTAC	4 cut(s)	262, 319, 666, 719
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	5 cut(s)	68, 387, 493, 593, 733
DpnII	GATC	5 cut(s)	66, 385, 491, 591, 731
Eam1104I	CTCTTC	2 cut(s)	142, 621
EarI	CTCTTC	2 cut(s)	142, 621
EciI	GGCGGA	3 cut(s)	117, 162, 247
Ecl136II	GAGCTC	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	3 cut(s)	367, 491, 641
FaiI	YATR	9 cut(s)	250, 314, 365, 393, 416, 489, 547, 639, 725
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	3 cut(s)	363, 487, 637
FauI	CCCGC	2 cut(s)	104, 119
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	8 cut(s)	28, 38, 41, 44, 47, 50, 73, 203
FokI	GGATG	6 cut(s)	303, 530, 539, 586, 662, 709
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	8 cut(s)	28, 38, 41, 44, 47, 50, 73, 203
FspBI	CTAG	4 cut(s)	60, 630, 674, 742
GlaI	GCGC	3 cut(s)	58, 115, 426
GluI	GCNGC	8 cut(s)	28, 38, 41, 44, 47, 50, 73, 203
HaeII	RGCGCY	2 cut(s)	60, 428
HapII	CCGG	5 cut(s)	24, 54, 206, 513, 624
HgaI	GACGC	2 cut(s)	43, 311
HhaI	GCGC	3 cut(s)	59, 116, 427
Hin1I	GRCGYC	2 cut(s)	35, 303
Hin1II	CATG	3 cut(s)	367, 491, 641
Hin6I	GCGC	3 cut(s)	57, 114, 425
HinP1I	GCGC	3 cut(s)	57, 114, 425
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	5 cut(s)	107, 197, 350, 461, 565
HpaII	CCGG	5 cut(s)	24, 54, 206, 513, 624
HphI	GGTGA	2 cut(s)	85, 361
Hpy166II	GTNNAC	3 cut(s)	16, 226, 331
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	2 cut(s)	278, 347
Hpy8I	GTNNAC	3 cut(s)	16, 226, 331
Hpy99I	CGWCG	2 cut(s)	223, 305
HpyAV	CCTTC	1 cut(s)	561
HpyCH4III	ACNGT	2 cut(s)	662, 670
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	7 cut(s)	30, 43, 226, 294, 442, 599, 641
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 43, 46, 49, 81, 208, 433
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	2 cut(s)	35, 303
Hsp92II	CATG	3 cut(s)	367, 491, 641
HspAI	GCGC	3 cut(s)	57, 114, 425
Kzo9I	GATC	5 cut(s)	66, 385, 491, 591, 731
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	5 cut(s)	14, 27, 33, 55, 59
LweI	GCATC	3 cut(s)	108, 281, 640
MaeI	CTAG	4 cut(s)	60, 630, 674, 742
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	68, 387, 493, 593, 733
MboI	GATC	5 cut(s)	66, 385, 491, 591, 731
MboII	GAAGA	4 cut(s)	129, 386, 389, 608
MfeI	CAATTG	2 cut(s)	603, 642
MhlI	GDGCHC	2 cut(s)	228, 285
MluCI	AATT	2 cut(s)	603, 642
MlyI	GAGTC	3 cut(s)	101, 191, 559
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	3 cut(s)	40, 46, 72
MspI	CCGG	5 cut(s)	24, 54, 206, 513, 624
MspR9I	CCNGG	4 cut(s)	54, 86, 514, 625
MunI	CAATTG	2 cut(s)	603, 642
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	7 cut(s)	27, 43, 46, 49, 81, 208, 433
NciI	CCSGG	3 cut(s)	54, 514, 625
NdeII	GATC	5 cut(s)	66, 385, 491, 591, 731
NlaIII	CATG	3 cut(s)	367, 491, 641
NlaIV	GGNNCC	3 cut(s)	210, 272, 398
NmuCI	GTSAC	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	350, 461
PkrI	GCNGC	8 cut(s)	29, 39, 42, 45, 48, 51, 74, 204
PleI	GAGTC	3 cut(s)	101, 191, 559
PpsI	GAGTC	3 cut(s)	101, 191, 559
Ppu21I	YACGTR	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	210, 272, 398
PspPI	GGNCC	1 cut(s)	270
PsrI	GAACNNNNNNTAC	2 cut(s)	702, 734
PstI	CTGCAG	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	4 cut(s)	263, 320, 667, 720
RsaNI	GTAC	4 cut(s)	262, 319, 666, 719
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	8 cut(s)	28, 38, 41, 44, 47, 50, 73, 203
Sau3AI	GATC	5 cut(s)	66, 385, 491, 591, 731
Sau96I	GGNCC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	3 cut(s)	101, 191, 559
ScrFI	CCNGG	4 cut(s)	54, 86, 514, 625
SduI	GDGCHC	2 cut(s)	228, 285
SfaNI	GCATC	3 cut(s)	108, 281, 640
SfcI	CTRYAG	2 cut(s)	41, 691
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	722
Sse9I	AATT	2 cut(s)	603, 642
SspMI	CTAG	4 cut(s)	60, 630, 674, 742
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	4 cut(s)	52, 84, 512, 623
TaaI	ACNGT	2 cut(s)	662, 670
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	1 cut(s)	582
TasI	AATT	2 cut(s)	603, 642
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	3 cut(s)	40, 52, 205
TfiI	GAWTC	2 cut(s)	350, 461
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	5 cut(s)	27, 40, 43, 46, 72
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	329, 464, 552, 626
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	667
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	4 cut(s)	60, 630, 674, 742
ZrmI	AGTACT	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.